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Searched refs:err_fread_noeof (Results 1 – 9 of 9) sorted by relevance

/dports/biology/bwa/bwa-0.7.17/
H A Dbwt.c415 if ((x = err_fread_noeof(a + offset, 1, x, fp)) == 0) break; in fread_fix()
428 err_fread_noeof(&primary, sizeof(bwtint_t), 1, fp); in bwt_restore_sa()
430 err_fread_noeof(skipped, sizeof(bwtint_t), 4, fp); // skip in bwt_restore_sa()
431 err_fread_noeof(&bwt->sa_intv, sizeof(bwtint_t), 1, fp); in bwt_restore_sa()
432 err_fread_noeof(&primary, sizeof(bwtint_t), 1, fp); in bwt_restore_sa()
454 err_fread_noeof(&bwt->primary, sizeof(bwtint_t), 1, fp); in bwt_restore_bwt()
455 err_fread_noeof(bwt->L2+1, sizeof(bwtint_t), 4, fp); in bwt_restore_bwt()
H A Dbwape.c286 err_fread_noeof(&n_aln, 4, 1, fp_sa[j]); in bwa_cal_pac_pos_pe()
290 err_fread_noeof(d->aln[j].a, sizeof(bwt_aln1_t), n_aln, fp_sa[j]); in bwa_cal_pac_pos_pe()
506 err_fread_noeof(pacseq, 1, bns->l_pac/4+1, bns->fp_pac); in bwa_paired_sw()
652 err_fread_noeof(magic[0], 1, 4, fp_sa[0]); in bwa_sai2sam_pe_core()
653 err_fread_noeof(magic[1], 1, 4, fp_sa[1]); in bwa_sai2sam_pe_core()
658 err_fread_noeof(&opt, sizeof(gap_opt_t), 1, fp_sa[0]); in bwa_sai2sam_pe_core()
661 err_fread_noeof(&opt, sizeof(gap_opt_t), 1, fp_sa[1]); // overwritten! in bwa_sai2sam_pe_core()
669 err_fread_noeof(pac, 1, bns->l_pac/4+1, bns->fp_pac); in bwa_sai2sam_pe_core()
H A Dbwase.c296 err_fread_noeof(pacseq, 1, bns->l_pac/4+1, bns->fp_pac); in bwa_refine_gapped()
528 err_fread_noeof(magic, 1, 4, fp_sa); in bwa_sai2sam_se_core()
533 err_fread_noeof(&opt, sizeof(gap_opt_t), 1, fp_sa); in bwa_sai2sam_se_core()
546 err_fread_noeof(&n_aln, 4, 1, fp_sa); in bwa_sai2sam_se_core()
551 err_fread_noeof(aln, sizeof(bwt_aln1_t), n_aln, fp_sa); in bwa_sai2sam_se_core()
H A Dbwtindex.c60 err_fread_noeof(&c, 1, 1, fp); in bwa_seq_len()
81 err_fread_noeof(buf2, 1, pac_size, fp); in bwt_pac2bwt()
H A Dutils.h70 size_t err_fread_noeof(void *ptr, size_t size, size_t nmemb, FILE *stream);
H A Dutils.c132 size_t err_fread_noeof(void *ptr, size_t size, size_t nmemb, FILE *stream) in err_fread_noeof() function
H A Dbwa.c282 …err_fread_noeof(idx->pac, 1, idx->bns->l_pac/4+1, idx->bns->fp_pac); // concatenated 2-bit encoded… in bwa_idx_load_from_disk()
H A Dbwtsw2_aux.c739 err_fread_noeof(pac, 1, bns->l_pac/4+1, bns->fp_pac); in bsw2_aln()
/dports/biology/freebayes/freebayes-1.3.5/contrib/SeqLib/bwa/
H A Dutils.h70 size_t err_fread_noeof(void *ptr, size_t size, size_t nmemb, FILE *stream);