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/dports/biology/hmmer/hmmer-3.3/easel/
H A D.gitignore22 miniapps/esl-afetch
23 miniapps/esl-alimanip
24 miniapps/esl-alimap
25 miniapps/esl-alimask
27 miniapps/esl-alipid
28 miniapps/esl-alirev
29 miniapps/esl-alistat
34 miniapps/esl-mask
40 miniapps/esl-sfetch
42 miniapps/esl-ssdraw
[all …]
H A Desl_stack.tex8 \ccode{esl\_stack\_PCreate()} creates a stack for pointer
24 \hyperlink{func:esl_stack_Reuse()}{\ccode{esl\_stack\_Reuse()}} & Reuse a stack.\\
25 \hyperlink{func:esl_stack_Destroy()}{\ccode{esl\_stack\_Destroy()}} & Free a stack.\\
56 purpose. \ccode{esl\_stack\_ICreate()} creates a stack for integers,
57 \ccode{esl\_stack\_CCreate()} creates a stack for characters, and
58 \ccode{esl\_stack\_PCreate()} creates a stack for pointers. They
60 by a call to \ccode{esl\_stack\_Destroy()}. All three types can also
62 \ccode{esl\_stack\_Reuse()}. A \ccode{Reuse()}'d stack retains its
73 \ccode{esl\_stack\_ObjectCount()} returns the number of objects stored
76 A special function, \ccode{esl\_stack\_Convert2String()}, operates
[all …]
H A Desl_scorematrix.tex15 \hyperlink{func:esl_scorematrix_Create()}{\ccode{esl\_scorematrix\_Create()}} & Create an \ccode{ES…
16 \hyperlink{func:esl_scorematrix_SetWAG()}{\ccode{esl\_scorematrix\_SetWAG()}} & Parameterize matrix…
18 \hyperlink{func:esl_scorematrix_Compare()}{\ccode{esl\_scorematrix\_Compare()}} & Compare two matri…
19 \hyperlink{func:esl_scorematrix_Max()}{\ccode{esl\_scorematrix\_Max()}} & Returns maximum value in …
20 \hyperlink{func:esl_scorematrix_Min()}{\ccode{esl\_scorematrix\_Min()}} & Returns minimum value in …
21 %\hyperlink{func:esl_scorematrix_RelativeEntropy()}{\ccode{esl\_scorematrix\_RelativeEntropy()}} & …
22 \hyperlink{func:esl_scorematrix_IsSymmetric()}{\ccode{esl\_scorematrix\_IsSymmetric()}} & Returns \…
23 \hyperlink{func:esl_scorematrix_Destroy()}{\ccode{esl\_scorematrix\_Destroy()}} & Frees a matrix.\\
25 \hyperlink{func:esl_scorematrix_Read()}{\ccode{esl\_scorematrix\_Read()}} & Read a standard matrix …
26 \hyperlink{func:esl_scorematrix_Write()}{\ccode{esl\_scorematrix\_Write()}} & Write a BLAST-compati…
[all …]
/dports/biology/infernal/infernal-1.1.3/easel/
H A D.gitignore22 miniapps/esl-afetch
23 miniapps/esl-alimanip
24 miniapps/esl-alimap
25 miniapps/esl-alimask
27 miniapps/esl-alipid
28 miniapps/esl-alirev
29 miniapps/esl-alistat
34 miniapps/esl-mask
40 miniapps/esl-sfetch
42 miniapps/esl-ssdraw
[all …]
H A Desl_stack.tex8 \ccode{esl\_stack\_PCreate()} creates a stack for pointer
24 \hyperlink{func:esl_stack_Reuse()}{\ccode{esl\_stack\_Reuse()}} & Reuse a stack.\\
25 \hyperlink{func:esl_stack_Destroy()}{\ccode{esl\_stack\_Destroy()}} & Free a stack.\\
56 purpose. \ccode{esl\_stack\_ICreate()} creates a stack for integers,
57 \ccode{esl\_stack\_CCreate()} creates a stack for characters, and
58 \ccode{esl\_stack\_PCreate()} creates a stack for pointers. They
60 by a call to \ccode{esl\_stack\_Destroy()}. All three types can also
62 \ccode{esl\_stack\_Reuse()}. A \ccode{Reuse()}'d stack retains its
73 \ccode{esl\_stack\_ObjectCount()} returns the number of objects stored
76 A special function, \ccode{esl\_stack\_Convert2String()}, operates
[all …]
H A Desl_scorematrix.tex15 \hyperlink{func:esl_scorematrix_Create()}{\ccode{esl\_scorematrix\_Create()}} & Create an \ccode{ES…
16 \hyperlink{func:esl_scorematrix_SetWAG()}{\ccode{esl\_scorematrix\_SetWAG()}} & Parameterize matrix…
18 \hyperlink{func:esl_scorematrix_Compare()}{\ccode{esl\_scorematrix\_Compare()}} & Compare two matri…
19 \hyperlink{func:esl_scorematrix_Max()}{\ccode{esl\_scorematrix\_Max()}} & Returns maximum value in …
20 \hyperlink{func:esl_scorematrix_Min()}{\ccode{esl\_scorematrix\_Min()}} & Returns minimum value in …
21 %\hyperlink{func:esl_scorematrix_RelativeEntropy()}{\ccode{esl\_scorematrix\_RelativeEntropy()}} & …
22 \hyperlink{func:esl_scorematrix_IsSymmetric()}{\ccode{esl\_scorematrix\_IsSymmetric()}} & Returns \…
23 \hyperlink{func:esl_scorematrix_Destroy()}{\ccode{esl\_scorematrix\_Destroy()}} & Frees a matrix.\\
25 \hyperlink{func:esl_scorematrix_Read()}{\ccode{esl\_scorematrix\_Read()}} & Read a standard matrix …
26 \hyperlink{func:esl_scorematrix_Write()}{\ccode{esl\_scorematrix\_Write()}} & Write a BLAST-compati…
[all …]
/dports/biology/infernal/infernal-1.1.3/easel/miniapps/
H A DMakefile.in48 esl-alimap\
49 esl-alimask\
51 esl-alipid\
52 esl-alirev\
53 esl-alistat\
58 esl-mask\
61 esl-selectn\
63 esl-seqstat\
64 esl-sfetch\
66 esl-ssdraw\
[all …]
/dports/biology/hmmer/hmmer-3.3/easel/miniapps/
H A DMakefile.in48 esl-alimap\
49 esl-alimask\
51 esl-alipid\
52 esl-alirev\
53 esl-alistat\
58 esl-mask\
61 esl-selectn\
63 esl-seqstat\
64 esl-sfetch\
66 esl-ssdraw\
[all …]
/dports/net/freeswitch/freeswitch-1.10.3.-release/src/mod/applications/mod_esl/
H A DMakefile.in151 am__objects_1 = ../../../../libs/esl/src/mod_esl_la-esl.lo \
619 ESL_SRCS = ../../../../libs/esl/src/esl.c \
707 ../../../../libs/esl/src/mod_esl_la-esl.lo: \
780 ../../../../libs/esl/src/mod_esl_la-esl.lo: ../../../../libs/esl/src/esl.c
782 …_V_at)$(am__mv) ../../../../libs/esl/src/$(DEPDIR)/mod_esl_la-esl.Tpo ../../../../libs/esl/src/$(D…
787 ../../../../libs/esl/src/mod_esl_la-esl_json.lo: ../../../../libs/esl/src/esl_json.c
794 ../../../../libs/esl/src/mod_esl_la-esl_event.lo: ../../../../libs/esl/src/esl_event.c
808 ../../../../libs/esl/src/mod_esl_la-esl_config.lo: ../../../../libs/esl/src/esl_config.c
815 ../../../../libs/esl/src/mod_esl_la-esl_buffer.lo: ../../../../libs/esl/src/esl_buffer.c
846 ../../../../libs/esl/src/mod_esl_la-esl_oop.lo: ../../../../libs/esl/src/esl_oop.cpp
[all …]
H A DMakefile.am4 ESL_DIR = $(switch_srcdir)/libs/esl
6 ESL_SRCS =../../../../libs/esl/src/esl.c ../../../../libs/esl/src/esl_json.c
7 ESL_SRCS +=../../../../libs/esl/src/esl_event.c ../../../../libs/esl/src/esl_threadmutex.c
8 ESL_SRCS +=../../../../libs/esl/src/esl_config.c ../../../../libs/esl/src/esl_oop.cpp
9 ESL_SRCS +=../../../../libs/esl/src/esl_buffer.c
/dports/net/freeswitch/freeswitch-1.10.3.-release/src/mod/applications/mod_hash/
H A DMakefile.in152 ../../../../libs/esl/src/mod_hash_la-esl.lo \
601 …esl/src/esl.c ../../../../libs/esl/src/esl_json.c ../../../../libs/esl/src/esl_event.c ../../../..…
680 ../../../../libs/esl/src/mod_hash_la-esl.lo: \
749 ../../../../libs/esl/src/mod_hash_la-esl.lo: ../../../../libs/esl/src/esl.c
750 …esl/src/mod_hash_la-esl.lo -MD -MP -MF ../../../../libs/esl/src/$(DEPDIR)/mod_hash_la-esl.Tpo -c -…
751 …V_at)$(am__mv) ../../../../libs/esl/src/$(DEPDIR)/mod_hash_la-esl.Tpo ../../../../libs/esl/src/$(D…
756 ../../../../libs/esl/src/mod_hash_la-esl_json.lo: ../../../../libs/esl/src/esl_json.c
763 ../../../../libs/esl/src/mod_hash_la-esl_event.lo: ../../../../libs/esl/src/esl_event.c
777 ../../../../libs/esl/src/mod_hash_la-esl_config.lo: ../../../../libs/esl/src/esl_config.c
784 ../../../../libs/esl/src/mod_hash_la-esl_buffer.lo: ../../../../libs/esl/src/esl_buffer.c
[all …]
H A DMakefile.am4 ESL_DIR=$(switch_srcdir)/libs/esl
7 …esl/src/esl.c ../../../../libs/esl/src/esl_json.c ../../../../libs/esl/src/esl_event.c ../../../..…
/dports/biology/infernal/infernal-1.1.3/easel/testsuite/
H A Dtestsuite.sqc94 1 exercise esl-translate !miniapps/esl-translate.itest.pl! @@ !! %TESTPFX%
96 1 exercise esl-afetch !miniapps/esl-afetch.itest.pl! @miniapps/esl-afetch@ %TESTPFX%
97 1 exercise esl-alimanip !miniapps/esl-alimanip.itest.pl! @miniapps/esl-alimanip@ %TESTPFX%
98 1 exercise esl-alimap !miniapps/esl-alimap.itest.pl! @miniapps/esl-alimap@ %TESTPFX%
99 1 exercise esl-alimask !miniapps/esl-alimask.itest.pl! @miniapps/esl-alimask@ %TESTPFX%
100 1 exercise esl-alimerge !miniapps/esl-alimerge.itest.pl! @miniapps/esl-alimerge@ %TESTPFX%
101 1 exercise esl-alistat !miniapps/esl-alistat.itest.pl! @miniapps/esl-alistat@ %TESTPFX%
102 1 exercise esl-compalign !miniapps/esl-compalign.itest.pl! @miniapps/esl-compalign@ %TESTPFX%
103 1 exercise esl-construct !miniapps/esl-construct.itest.pl! @miniapps/esl-construct@ %TESTPFX%
104 1 exercise esl-mask !miniapps/esl-mask.itest.pl! @miniapps/esl-mask@ %TESTPFX%
[all …]
/dports/biology/hmmer/hmmer-3.3/easel/testsuite/
H A Dtestsuite.sqc94 1 exercise esl-translate !miniapps/esl-translate.itest.pl! @@ !! %TESTPFX%
96 1 exercise esl-afetch !miniapps/esl-afetch.itest.pl! @miniapps/esl-afetch@ %TESTPFX%
97 1 exercise esl-alimanip !miniapps/esl-alimanip.itest.pl! @miniapps/esl-alimanip@ %TESTPFX%
98 1 exercise esl-alimap !miniapps/esl-alimap.itest.pl! @miniapps/esl-alimap@ %TESTPFX%
99 1 exercise esl-alimask !miniapps/esl-alimask.itest.pl! @miniapps/esl-alimask@ %TESTPFX%
100 1 exercise esl-alimerge !miniapps/esl-alimerge.itest.pl! @miniapps/esl-alimerge@ %TESTPFX%
101 1 exercise esl-alistat !miniapps/esl-alistat.itest.pl! @miniapps/esl-alistat@ %TESTPFX%
102 1 exercise esl-compalign !miniapps/esl-compalign.itest.pl! @miniapps/esl-compalign@ %TESTPFX%
103 1 exercise esl-construct !miniapps/esl-construct.itest.pl! @miniapps/esl-construct@ %TESTPFX%
104 1 exercise esl-mask !miniapps/esl-mask.itest.pl! @miniapps/esl-mask@ %TESTPFX%
[all …]
/dports/biology/hmmer/hmmer-3.3/documentation/userguide/
H A DMakefile.in68 esl-afetch.man \
69 esl-alimanip.man \
70 esl-alimap.man \
71 esl-alimask.man \
72 esl-alimerge.man \
73 esl-alipid.man \
74 esl-alirev.man \
75 esl-alistat.man \
76 esl-compalign.man \
77 esl-compstruct.man \
[all …]
/dports/biology/infernal/infernal-1.1.3/hmmer/documentation/userguide/
H A DMakefile.in68 esl-afetch.man \
69 esl-alimanip.man \
70 esl-alimap.man \
71 esl-alimask.man \
72 esl-alimerge.man \
73 esl-alipid.man \
74 esl-alirev.man \
75 esl-alistat.man \
76 esl-compalign.man \
77 esl-compstruct.man \
[all …]
/dports/sysutils/u-boot-nanopi-neo2/u-boot-2021.07/lib/efi_loader/
H A Defi_signature.c610 if (esl->signature_list_size in efi_sigstore_parse_siglist()
611 <= (sizeof(*esl) + esl->signature_header_size)) { in efi_sigstore_parse_siglist()
626 left = esl->signature_list_size in efi_sigstore_parse_siglist()
627 - (sizeof(*esl) + esl->signature_header_size); in efi_sigstore_parse_siglist()
629 ((u8 *)esl + sizeof(*esl) + esl->signature_header_size); in efi_sigstore_parse_siglist()
633 if (left < esl->signature_size) { in efi_sigstore_parse_siglist()
663 left -= esl->signature_size; in efi_sigstore_parse_siglist()
690 struct efi_signature_list *esl; in efi_build_signature_store() local
693 esl = sig_list; in efi_build_signature_store()
696 if (size < sizeof(*esl)) { in efi_build_signature_store()
[all …]
/dports/sysutils/u-boot-olimex-a20-som-evb/u-boot-2021.07/lib/efi_loader/
H A Defi_signature.c610 if (esl->signature_list_size in efi_sigstore_parse_siglist()
611 <= (sizeof(*esl) + esl->signature_header_size)) { in efi_sigstore_parse_siglist()
626 left = esl->signature_list_size in efi_sigstore_parse_siglist()
627 - (sizeof(*esl) + esl->signature_header_size); in efi_sigstore_parse_siglist()
629 ((u8 *)esl + sizeof(*esl) + esl->signature_header_size); in efi_sigstore_parse_siglist()
633 if (left < esl->signature_size) { in efi_sigstore_parse_siglist()
663 left -= esl->signature_size; in efi_sigstore_parse_siglist()
690 struct efi_signature_list *esl; in efi_build_signature_store() local
693 esl = sig_list; in efi_build_signature_store()
696 if (size < sizeof(*esl)) { in efi_build_signature_store()
[all …]
/dports/sysutils/u-boot-olinuxino-lime2/u-boot-2021.07/lib/efi_loader/
H A Defi_signature.c610 if (esl->signature_list_size in efi_sigstore_parse_siglist()
611 <= (sizeof(*esl) + esl->signature_header_size)) { in efi_sigstore_parse_siglist()
626 left = esl->signature_list_size in efi_sigstore_parse_siglist()
627 - (sizeof(*esl) + esl->signature_header_size); in efi_sigstore_parse_siglist()
629 ((u8 *)esl + sizeof(*esl) + esl->signature_header_size); in efi_sigstore_parse_siglist()
633 if (left < esl->signature_size) { in efi_sigstore_parse_siglist()
663 left -= esl->signature_size; in efi_sigstore_parse_siglist()
690 struct efi_signature_list *esl; in efi_build_signature_store() local
693 esl = sig_list; in efi_build_signature_store()
696 if (size < sizeof(*esl)) { in efi_build_signature_store()
[all …]
/dports/sysutils/u-boot-olinuxino-lime/u-boot-2021.07/lib/efi_loader/
H A Defi_signature.c610 if (esl->signature_list_size in efi_sigstore_parse_siglist()
611 <= (sizeof(*esl) + esl->signature_header_size)) { in efi_sigstore_parse_siglist()
626 left = esl->signature_list_size in efi_sigstore_parse_siglist()
627 - (sizeof(*esl) + esl->signature_header_size); in efi_sigstore_parse_siglist()
629 ((u8 *)esl + sizeof(*esl) + esl->signature_header_size); in efi_sigstore_parse_siglist()
633 if (left < esl->signature_size) { in efi_sigstore_parse_siglist()
663 left -= esl->signature_size; in efi_sigstore_parse_siglist()
690 struct efi_signature_list *esl; in efi_build_signature_store() local
693 esl = sig_list; in efi_build_signature_store()
696 if (size < sizeof(*esl)) { in efi_build_signature_store()
[all …]
/dports/sysutils/u-boot-beaglebone/u-boot-2021.07/lib/efi_loader/
H A Defi_signature.c610 if (esl->signature_list_size in efi_sigstore_parse_siglist()
611 <= (sizeof(*esl) + esl->signature_header_size)) { in efi_sigstore_parse_siglist()
626 left = esl->signature_list_size in efi_sigstore_parse_siglist()
627 - (sizeof(*esl) + esl->signature_header_size); in efi_sigstore_parse_siglist()
629 ((u8 *)esl + sizeof(*esl) + esl->signature_header_size); in efi_sigstore_parse_siglist()
633 if (left < esl->signature_size) { in efi_sigstore_parse_siglist()
663 left -= esl->signature_size; in efi_sigstore_parse_siglist()
690 struct efi_signature_list *esl; in efi_build_signature_store() local
693 esl = sig_list; in efi_build_signature_store()
696 if (size < sizeof(*esl)) { in efi_build_signature_store()
[all …]
/dports/sysutils/u-boot-cubieboard2/u-boot-2021.07/lib/efi_loader/
H A Defi_signature.c610 if (esl->signature_list_size in efi_sigstore_parse_siglist()
611 <= (sizeof(*esl) + esl->signature_header_size)) { in efi_sigstore_parse_siglist()
626 left = esl->signature_list_size in efi_sigstore_parse_siglist()
627 - (sizeof(*esl) + esl->signature_header_size); in efi_sigstore_parse_siglist()
629 ((u8 *)esl + sizeof(*esl) + esl->signature_header_size); in efi_sigstore_parse_siglist()
633 if (left < esl->signature_size) { in efi_sigstore_parse_siglist()
663 left -= esl->signature_size; in efi_sigstore_parse_siglist()
690 struct efi_signature_list *esl; in efi_build_signature_store() local
693 esl = sig_list; in efi_build_signature_store()
696 if (size < sizeof(*esl)) { in efi_build_signature_store()
[all …]
/dports/sysutils/u-boot-sinovoip-bpi-m3/u-boot-2021.07/lib/efi_loader/
H A Defi_signature.c610 if (esl->signature_list_size in efi_sigstore_parse_siglist()
611 <= (sizeof(*esl) + esl->signature_header_size)) { in efi_sigstore_parse_siglist()
626 left = esl->signature_list_size in efi_sigstore_parse_siglist()
627 - (sizeof(*esl) + esl->signature_header_size); in efi_sigstore_parse_siglist()
629 ((u8 *)esl + sizeof(*esl) + esl->signature_header_size); in efi_sigstore_parse_siglist()
633 if (left < esl->signature_size) { in efi_sigstore_parse_siglist()
663 left -= esl->signature_size; in efi_sigstore_parse_siglist()
690 struct efi_signature_list *esl; in efi_build_signature_store() local
693 esl = sig_list; in efi_build_signature_store()
696 if (size < sizeof(*esl)) { in efi_build_signature_store()
[all …]
/dports/sysutils/u-boot-a13-olinuxino/u-boot-2021.07/lib/efi_loader/
H A Defi_signature.c610 if (esl->signature_list_size in efi_sigstore_parse_siglist()
611 <= (sizeof(*esl) + esl->signature_header_size)) { in efi_sigstore_parse_siglist()
626 left = esl->signature_list_size in efi_sigstore_parse_siglist()
627 - (sizeof(*esl) + esl->signature_header_size); in efi_sigstore_parse_siglist()
629 ((u8 *)esl + sizeof(*esl) + esl->signature_header_size); in efi_sigstore_parse_siglist()
633 if (left < esl->signature_size) { in efi_sigstore_parse_siglist()
663 left -= esl->signature_size; in efi_sigstore_parse_siglist()
690 struct efi_signature_list *esl; in efi_build_signature_store() local
693 esl = sig_list; in efi_build_signature_store()
696 if (size < sizeof(*esl)) { in efi_build_signature_store()
[all …]
/dports/sysutils/u-boot-rpi/u-boot-2021.07/lib/efi_loader/
H A Defi_signature.c610 if (esl->signature_list_size in efi_sigstore_parse_siglist()
611 <= (sizeof(*esl) + esl->signature_header_size)) { in efi_sigstore_parse_siglist()
626 left = esl->signature_list_size in efi_sigstore_parse_siglist()
627 - (sizeof(*esl) + esl->signature_header_size); in efi_sigstore_parse_siglist()
629 ((u8 *)esl + sizeof(*esl) + esl->signature_header_size); in efi_sigstore_parse_siglist()
633 if (left < esl->signature_size) { in efi_sigstore_parse_siglist()
663 left -= esl->signature_size; in efi_sigstore_parse_siglist()
690 struct efi_signature_list *esl; in efi_build_signature_store() local
693 esl = sig_list; in efi_build_signature_store()
696 if (size < sizeof(*esl)) { in efi_build_signature_store()
[all …]

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