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Searched refs:fa_case (Results 1 – 4 of 4) sorted by relevance

/dports/biology/bio-mocha/bcftools-1.14/
H A Dconsensus.c91 int fa_case; // output upper case or lower case: TO_UPPER|TO_LOWER member
344 args->fa_case = -1; in init_region()
842 args->fa_case = toupper(args->fa_buf.s[idx])==args->fa_buf.s[idx] ? TO_UPPER : TO_LOWER; in apply_variant()
843 if ( args->fa_case==TO_UPPER ) in apply_variant()
976 if ( args->fa_case==-1 ) args->fa_case = toupper(str.s[0])==str.s[0] ? 1 : 0; in consensus()
/dports/biology/bcftools/bcftools-1.14/
H A Dconsensus.c91 int fa_case; // output upper case or lower case: TO_UPPER|TO_LOWER member
344 args->fa_case = -1; in init_region()
842 args->fa_case = toupper(args->fa_buf.s[idx])==args->fa_buf.s[idx] ? TO_UPPER : TO_LOWER; in apply_variant()
843 if ( args->fa_case==TO_UPPER ) in apply_variant()
976 if ( args->fa_case==-1 ) args->fa_case = toupper(str.s[0])==str.s[0] ? 1 : 0; in consensus()
/dports/biology/py-pysam/pysam-0.18.0/bcftools/
H A Dconsensus.c91 int fa_case; // output upper case or lower case: TO_UPPER|TO_LOWER member
344 args->fa_case = -1; in init_region()
842 args->fa_case = toupper(args->fa_buf.s[idx])==args->fa_buf.s[idx] ? TO_UPPER : TO_LOWER; in apply_variant()
843 if ( args->fa_case==TO_UPPER ) in apply_variant()
976 if ( args->fa_case==-1 ) args->fa_case = toupper(str.s[0])==str.s[0] ? 1 : 0; in consensus()
H A Dconsensus.c.pysam.c93 int fa_case; // output upper case or lower case: TO_UPPER|TO_LOWER member
346 args->fa_case = -1; in init_region()
844 args->fa_case = toupper(args->fa_buf.s[idx])==args->fa_buf.s[idx] ? TO_UPPER : TO_LOWER; in apply_variant()
845 if ( args->fa_case==TO_UPPER ) in apply_variant()
978 if ( args->fa_case==-1 ) args->fa_case = toupper(str.s[0])==str.s[0] ? 1 : 0; in consensus()