| /dports/biology/ncbi-toolkit/ncbi/desktop/ |
| H A D | ingengraph.c | 425 Uint1 featdeftype; member
486 Uint4 rowNum, featdeftype; in Ing_DrawOverviewPage() local
501 if (context->featdeftype == FEATDEF_misc_feature && in Ing_DrawOverviewPage()
541 if (context->featdeftype == featdeftype){ in Ing_DrawOverviewPage()
614 if (sfc->featdeftype == FEATDEF_misc_feature && in Ing_CollectFeatures1()
627 IngfeatDefTrack2[sfc->featdeftype]=TRUE; in Ing_CollectFeatures1()
634 context->featdeftype = sfc->featdeftype; in Ing_CollectFeatures1()
657 IngfeatDefTrack[sfc->featdeftype] = 2; in Ing_CollectFeatures2()
662 context->featdeftype = sfc->featdeftype; in Ing_CollectFeatures2()
686 else if (sfc->featdeftype < 7){ in Ing_CollectFeatures2()
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| H A D | asn2graphic.c | 1188 Uint4 featdeftype; in ParseFilterItem() local
1299 if (featdeftype == FEATDEF_BAD) { in ParseFilterItem()
1338 featdeftype = FEATDEF_ANY; in ParseFilterItem()
2812 rFeats [i].featdeftype = fContext.featdeftype; in GetAndCountFeatures()
2896 Uint1 featdeftype, in EnsureFeatureHasSegment() argument
2917 if (FPSP->drawSegs [featdeftype] == NULL || FPSP->labelSegs [featdeftype] == NULL) return FALSE; in EnsureFeatureHasSegment()
3588 newRFIP->featdeftype = oldRFIP->featdeftype; in AddFeatureToRow()
4336 featdeftype = RFIP->featdeftype; in ProcessRows()
4624 RFIP->featdeftype = 0; in Asn2gphSegmentExploreProc()
6131 Int1 featdeftype; in FilterAndLayout() local
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| H A D | asn2graphicp.h | 234 Uint1 featdeftype; member
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| H A D | ingenwin.c | 1308 sfp->idx.subtype = featdeftype; in Ing_CreateNewFeature()
5050 pfp->type == sfc->featdeftype){ in Ing_CheckGenFeats()
5618 pfp->type = sfc->featdeftype; in Ing_DoPropagate()
5659 IngfeatDefTrack[sfc->featdeftype] = 2; in Ing_DoPropagate()
5834 Uint1 featdeftype= 0; in Ing_AnnotateAlignmentAccept() local
5864 featdeftype = FEATDEF_mRNA; in Ing_AnnotateAlignmentAccept()
5868 featdeftype = FEATDEF_CDS; in Ing_AnnotateAlignmentAccept()
5872 featdeftype = FEATDEF_GENE; in Ing_AnnotateAlignmentAccept()
6019 mRNATrack[sfc->featdeftype] = TRUE; in Ing_SetToPropagateArray()
6246 static Boolean Ing_FeatureFilter(Uint2 featdeftype) in Ing_FeatureFilter() argument
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| H A D | udvgraph.c | 915 if(context.featdeftype== FEATDEF_HET){ in UDV_click_item()
2855 if(context->featdeftype== FEATDEF_HET){ in UDV_Draw_features()
2892 clr=pClr[context->featdeftype]; in UDV_Draw_features()
3069 switch(context->featdeftype){ in UDV_Draw_features()
3223 SetColor(pClr[context->featdeftype]); in UDV_Draw_features()
3329 if(context->featdeftype== FEATDEF_HET){ in UDV_Draw_features_MAP()
3391 if (context->featdeftype==FEATDEF_CDS) in UDV_Draw_features_MAP()
3477 SetColor(pClr[context.featdeftype]); in UDV_Draw_features_label()
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| H A D | dotvibrant.c | 3393 dfp_new->type=context->featdeftype; in DOT_AddFeaturesToViewer()
3402 if (!fdindex[context->featdeftype].present) in DOT_AddFeaturesToViewer()
3404 fdindex[context->featdeftype].present=TRUE; in DOT_AddFeaturesToViewer()
3405 fdindex[context->featdeftype].show=TRUE; in DOT_AddFeaturesToViewer()
3406 fdindex[context->featdeftype].label=dfp_new->label; in DOT_AddFeaturesToViewer()
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| H A D | gbfview.c | 1157 if (fbp->featdeftype == FEATDEF_CDS) { in PopulateFF()
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| H A D | ingenext.c | 3037 if (context->featdeftype==FEATDEF_CDS){ in Ing_MismatchProc()
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| /dports/biology/ncbi-toolkit/ncbi/api/ |
| H A D | asn2gnb4.c | 3015 Uint1 featdeftype, in FormatFeatureBlockQuals() argument
6211 Uint1 featdeftype, in AddJsInterval() argument
6234 featdeftype = FEATDEF_source; in AddJsInterval()
6489 Uint1 featdeftype; in FormatFeatureBlockEx() local
6620 featdeftype = fcontext->featdeftype; in FormatFeatureBlockEx()
6622 if (featdeftype < FEATDEF_GENE || featdeftype >= FEATDEF_MAX) { in FormatFeatureBlockEx()
6623 featdeftype = FEATDEF_BAD; in FormatFeatureBlockEx()
6625 if (featdeftype == 0) { in FormatFeatureBlockEx()
6776 if (featdeftype >= FEATDEF_preprotein && featdeftype <= FEATDEF_propeptide_aa) { in FormatFeatureBlockEx()
7099 } else if (featdeftype != FEATDEF_operon && featdeftype != FEATDEF_gap) { in FormatFeatureBlockEx()
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| H A D | asn2gnb3.c | 6368 featdeftype = fbp->featdeftype; in SetIfpFeatCount()
6375 … if (featdeftype == FEATDEF_REGION || featdeftype == FEATDEF_BOND || featdeftype == FEATDEF_SITE) { in SetIfpFeatCount()
6382 if (featdeftype >= FEATDEF_preprotein && featdeftype <= FEATDEF_transit_peptide_aa) { in SetIfpFeatCount()
6389 featdeftype = FEATDEF_CDS; in SetIfpFeatCount()
6548 fbp->featdeftype = pcontext.featdeftype; in GetFeatsOnCdsProduct()
7354 if (fcontext->featdeftype >= FEATDEF_GENE && fcontext->featdeftype < FEATDEF_MAX) { in GetFeatsOnBioseq()
7438 fbp->featdeftype = fcontext->featdeftype; in GetFeatsOnBioseq()
7525 fbp->featdeftype = cdscontext.featdeftype; in GetFeatsOnBioseq()
7847 fbp->featdeftype = fcontext.featdeftype; in AddFeatureBlock()
7935 fbp->featdeftype = fcontext.featdeftype; in AddFeatureBlock()
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| H A D | asn2gnbp.h | 170 Uint1 featdeftype; member
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| H A D | explore.h | 130 Uint1 featdeftype; member
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| H A D | valid.c | 18261 context.featdeftype = feat->subtype; in MarkMrnasFromCDSXrefs()
19393 Uint2 featdeftype = 0; in ValidateBioseqContextIndexed() local
19780 if (fcontext.left == left && fcontext.right == right && fcontext.featdeftype == featdeftype) { in ValidateBioseqContextIndexed()
19812 if (featdeftype == FEATDEF_PUB || in ValidateBioseqContextIndexed()
19813 …featdeftype == FEATDEF_REGION || featdeftype == FEATDEF_misc_feature || featdeftype == FEATDEF_STS… in ValidateBioseqContextIndexed()
19880 if (featdeftype == FEATDEF_SITE || featdeftype == FEATDEF_BOND) { in ValidateBioseqContextIndexed()
19906 …if ((featdeftype == FEATDEF_CDS || featdeftype == FEATDEF_mRNA) && HaveUniqueFeatIDXrefs (xref, sf… in ValidateBioseqContextIndexed()
19956 …if ((featdeftype == FEATDEF_CDS || featdeftype == FEATDEF_mRNA) && HaveUniqueFeatIDXrefs (xref, sf… in ValidateBioseqContextIndexed()
19973 …fcontext.featdeftype == FEATDEF_sig_peptide_aa || fcontext.featdeftype == FEATDEF_transit_peptide_… in ValidateBioseqContextIndexed()
19974 …if (featdeftype == FEATDEF_mat_peptide_aa || featdeftype == FEATDEF_sig_peptide_aa || featdeftype … in ValidateBioseqContextIndexed()
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| H A D | asn2gnb6.c | 6397 Uint1 featdeftype; in FormatSlashBlock() local
6549 for (featdeftype = 0; featdeftype < FEATDEF_MAX; featdeftype++) { in FormatSlashBlock()
6550 iasp->feat_key [featdeftype] = MemFree (iasp->feat_key [featdeftype]); in FormatSlashBlock()
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| H A D | udvseq.c | 812 if(context->featdeftype== FEATDEF_HET){ in UDV_ParaGFTableFeatures()
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| H A D | seqmgr.c | 4810 context->featdeftype = item->subtype; in SeqMgrGetDesiredFeature()
8378 context->featdeftype = best->subtype; in SetContextForFeature()
8735 context->featdeftype = best->subtype; in SeqMgrBestOverlapSetContext()
9235 context->featdeftype = feat->subtype; in SeqMgrGetFeatureByLabelEx()
9361 context->featdeftype = feat->subtype; in SeqMgrGetFeatureByFeatID()
9562 context->featdeftype = item->subtype; in SeqMgrGetFeatureInIndex()
9783 context->featdeftype = item->subtype; in SeqMgrGetNextFeatureEx()
10278 context.featdeftype = item->subtype; in SeqMgrExploreFeaturesInt()
10444 context.featdeftype = item->subtype; in SeqMgrVisitFeatures()
12198 context->featdeftype = feat->subtype; in FindNthFeatureUseMultipleArrays()
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| H A D | asn2gnbi.h | 1144 Uint1 featdeftype,
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| H A D | pgppop.c | 667 if(context->featdeftype==FEATDEF_CDS){ in DDV_DispFeaturesForPGP()
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| H A D | sqnutil3.c | 2754 if (context.featdeftype == FEATDEF_REGION && FeatIsCDD (sfp, &currscore)) { in BestCDDperBioseq()
2759 while (sfp != NULL && context.featdeftype == FEATDEF_REGION && in BestCDDperBioseq()
16378 Uint1 featdeftype; member
16417 sfp = SeqMgrGetNextFeature (bsp, NULL, 0, fcp->featdeftype, &fcontext); in RNACountFeaturesBioseqCallback()
16420 sfp = SeqMgrGetNextFeature (bsp, sfp, SEQFEAT_RNA, fcp->featdeftype, &fcontext); in RNACountFeaturesBioseqCallback()
16431 if (fcp->featdeftype == FEATDEF_tRNA) { in RNACountFeaturesBioseqCallback()
16437 if (fcp->featdeftype == FEATDEF_tRNA) { in RNACountFeaturesBioseqCallback()
16503 …CountFeaturesAndFindDups (ValNodePtr PNTR discrepancy_list, ValNodePtr sep_list, Uint1 featdeftype) in RNACountFeaturesAndFindDups() argument
16511 fcd.featdeftype = featdeftype; in RNACountFeaturesAndFindDups()
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| H A D | asn2gnb1.c | 2472 fbp->featdeftype = FEATDEF_gap; in AddRemainingGaps()
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| H A D | edutil.c | 5201 context->featdeftype = item->subtype; in SeqEdGetNextFeature()
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| H A D | gather.c | 1286 context->featdeftype = item->subtype; in SeqMgrGetNextFeatureByID()
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| /dports/biology/ncbi-toolkit/ncbi/demo/ |
| H A D | idcleanscan.c | 466 if (fcontext.featdeftype == FEATDEF_mat_peptide_aa || in DoProteins()
467 fcontext.featdeftype == FEATDEF_sig_peptide_aa || in DoProteins()
468 fcontext.featdeftype == FEATDEF_transit_peptide_aa) { in DoProteins()
472 fcontext.featdeftype != FEATDEF_sig_peptide_aa) { in DoProteins()
505 if (fcontext.featdeftype == FEATDEF_sig_peptide_aa) { in DoProteins()
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| /dports/biology/ncbi-toolkit/ncbi/sequin/ |
| H A D | sequin3.c | 15236 Uint1 featdeftype; member
15498 || sfp->idx.subtype != cgp->featdeftype) in CorrectOneCDSGene()
15598 cgp->featdeftype = FEATDEF_CDS; in CorrectGenesForCDSs()
15601 cgp->featdeftype = FEATDEF_mRNA; in CorrectGenesForCDSs()
15604 cgp->featdeftype = FEATDEF_ncRNA; in CorrectGenesForCDSs()
15627 if(sfp != NULL && sfp->idx.subtype == cgp->featdeftype) in CorrectGenesForCDSs()
15635 if (cgp->featdeftype == FEATDEF_CDS) { in CorrectGenesForCDSs()
15665 if (cgp->featdeftype == FEATDEF_CDS) { in CorrectGenesForCDSs()
16127 if (fcontext.featdeftype == FEATDEF_GENE) in ExtendGenesOnSequence()
16190 if (fcontext.featdeftype == FEATDEF_GENE) in ExtendGenesOnSequence()
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| H A D | sequin9.c | 4687 context.featdeftype == lastcontext.featdeftype) { in ResolveDuplicateFeats()
12100 context1->featdeftype == context2->featdeftype) in AreFeaturesDuplicates()
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