/dports/devel/capnproto/capnproto-0.9.0/c++/src/kj/ |
H A D | string.h | 302 inline char* fillLimited(char* ptr, char* limit) { return ptr; } in fillLimited() function 337 char* fillLimited(char* __restrict__ target, char* limit, const First& first, Rest&&... rest) { in fillLimited() function 344 return fillLimited(target, limit, kj::fwd<Rest>(rest)...); in fillLimited() 354 char* fillLimited(char* __restrict__ target, char* limit, Delimited<T>&& first,Rest&&... rest); 358 char* fillLimited(char* __restrict__ target, char* limit, Delimited<T>& first,Rest&&... rest); 514 char* end = _::fillLimited(buffer.begin(), buffer.end() - 1, in strPreallocated() 702 target = fillLimited(target, limit, delimiter); in flattenTo() 704 target = fillLimited(target, limit, kj::toCharSequence(elem)); in flattenTo() 730 return fillLimited(target, limit, kj::fwd<Rest>(rest)...); in fillLimited() 738 char* fillLimited(char* __restrict__ target, char* limit, Delimited<T>& first, Rest&&... rest) { in fillLimited() function [all …]
|
H A D | string-tree.h | 128 char* fillLimited(char* __restrict__ target, char* limit, const StringTree& first, Rest&&... rest) { in fillLimited() function 132 return fillLimited(target + first.size(), limit, kj::fwd<Rest>(rest)...); in fillLimited()
|
H A D | exception.c++ | 423 ptr = _::fillLimited(ptr, limit, kj::StringPtr(info.dli_fname), "@0x"_kj, hex(offset)); in stringifyStackTraceAddresses() 425 ptr = _::fillLimited(ptr, limit, toCharSequence(addr)); in stringifyStackTraceAddresses() 428 ptr = _::fillLimited(ptr, limit, " "_kj); in stringifyStackTraceAddresses()
|
/dports/devel/capnproto080/capnproto-0.8.0/c++/src/kj/ |
H A D | string.h | 265 inline char* fillLimited(char* ptr, char* limit) { return ptr; } in fillLimited() function 270 char* fillLimited(char* __restrict__ target, char* limit, const StringTree& first, Rest&&... rest); 300 char* fillLimited(char* __restrict__ target, char* limit, const First& first, Rest&&... rest) { in fillLimited() function 307 return fillLimited(target, limit, kj::fwd<Rest>(rest)...); in fillLimited() 317 char* fillLimited(char* __restrict__ target, char* limit, Delimited<T> first,Rest&&... rest); 463 char* end = _::fillLimited(buffer.begin(), buffer.end() - 1, in strPreallocated() 655 target = fillLimited(target, limit, delimiter); in flattenTo() 657 target = fillLimited(target, limit, kj::toCharSequence(elem)); in flattenTo() 681 char* fillLimited(char* __restrict__ target, char* limit, Delimited<T> first, Rest&&... rest) { in fillLimited() function 683 return fillLimited(target, limit, kj::fwd<Rest>(rest)...); in fillLimited()
|
H A D | string-tree.h | 128 char* fillLimited(char* __restrict__ target, char* limit, const StringTree& first, Rest&&... rest) { in fillLimited() function 132 return fillLimited(target + first.size(), limit, kj::fwd<Rest>(rest)...); in fillLimited()
|
H A D | exception.c++ | 396 ptr = _::fillLimited(ptr, limit, kj::StringPtr(info.dli_fname), "@0x"_kj, hex(offset)); in stringifyStackTraceAddresses() 398 ptr = _::fillLimited(ptr, limit, toCharSequence(addr)); in stringifyStackTraceAddresses() 401 ptr = _::fillLimited(ptr, limit, " "_kj); in stringifyStackTraceAddresses()
|
/dports/biology/bbmap/bbmap/current/aligner/ |
H A D | Aligner.java | 7 int[] fillLimited(byte[] read, byte[] ref, int refStartLoc, int refEndLoc, int minScore); in fillLimited() method
|
H A D | SingleStateAlignerPacBioAdapter.java | 69 …public final int[] fillLimited(byte[] read, byte[] ref, int refStartLoc, int refEndLoc, int minSco… in fillLimited() method in SingleStateAlignerPacBioAdapter 310 int[] max=fillLimited(read, ref, a, b, minScore);
|
H A D | SingleStateAlignerFlat.java | 94 …public final int[] fillLimited(byte[] read, byte[] ref, int refStartLoc, int refEndLoc, int minSco… in fillLimited() method in SingleStateAlignerFlat 424 int[] max=fillLimited(read, ref, a, b, minScore);
|
H A D | SingleStateAlignerFlat2_1D.java | 68 …public final int[] fillLimited(byte[] read, byte[] ref, int refStartLoc, int refEndLoc, int minSco… in fillLimited() method in SingleStateAlignerFlat2_1D 409 int[] max=fillLimited(read, ref, a, b, minScore); in fillAndScoreLimited()
|
H A D | SingleStateAlignerFlat2.java | 79 …public final int[] fillLimited(byte[] read, byte[] ref, int refStartLoc, int refEndLoc, int minSco… in fillLimited() method in SingleStateAlignerFlat2 426 int[] max=fillLimited(read, ref, a, b, minScore); in fillAndScoreLimited()
|
H A D | SingleStateAlignerFlat3.java | 79 …public final int[] fillLimited(byte[] read, byte[] ref, int refStartLoc, int refEndLoc, int minSco… in fillLimited() method in SingleStateAlignerFlat3 424 int[] max=fillLimited(read, ref, a, b, minScore); in fillAndScoreLimited()
|
H A D | SingleStateAlignerFlat2Amino.java | 78 …public final int[] fillLimited(byte[] read, byte[] ref, int refStartLoc, int refEndLoc, int minSco… in fillLimited() method in SingleStateAlignerFlat2Amino 494 int[] max=fillLimited(read, ref, a, b, minScore); in fillAndScoreLimited()
|
H A D | SingleStateAlignerFlatFloat.java | 79 …public final int[] fillLimited(byte[] read, byte[] ref, int refStartLoc, int refEndLoc, int minSco… in fillLimited() method in SingleStateAlignerFlatFloat 467 int[] max=fillLimited(read, ref, a, b, minScore); in fillAndScoreLimited()
|
H A D | MultiStateAligner9PacBioAdapter_WithBarriers.java | 38 int[] max=msa.fillLimited(read, ref, 0, ref.length-1, 0, null); in main() 114 …public final int[] fillLimited(byte[] read, byte[] ref, int refStartLoc, int refEndLoc, int minSco… in fillLimited() method in MultiStateAligner9PacBioAdapter_WithBarriers 1342 int[] max=fillLimited(read, ref, a, b, minScore, gaps); 1346 int[] max=fillLimited(read, ref, a, b, minScore, gaps);
|
H A D | MultiStateAligner9PacBioAdapter.java | 82 …public final int[] fillLimited(byte[] read, byte[] ref, int refStartLoc, int refEndLoc, int minSco… in fillLimited() method in MultiStateAligner9PacBioAdapter 957 int[] max=fillLimited(read, ref, a, b, minScore);
|
H A D | MultiStateAligner9PacBioAdapter2.java | 141 …public final int[] fillLimited(byte[] read, byte[] ref, int refStartLoc, int refEndLoc, int minSco… in fillLimited() method in MultiStateAligner9PacBioAdapter2 1138 int[] max=fillLimited(read, ref, a, b, minScore);
|
H A D | MultiStateAligner9PacBioAdapter3.java | 78 …public final int[] fillLimited(byte[] read, byte[] ref, int refStartLoc, int refEndLoc, int minSco… in fillLimited() method in MultiStateAligner9PacBioAdapter3 963 int[] max=fillLimited(read, ref, a, b, minScore); in fillAndScoreLimited()
|
/dports/biology/bbmap/bbmap/current/var2/ |
H A D | Realigner.java | 86 max=msa.fillLimited(qbases, rbases, a, b, minScore, null); in realign()
|
/dports/biology/bbmap/bbmap/current/align2/ |
H A D | TranslateColorspaceRead.java | 132 int[] max=msa.fillLimited(r.bases, chacs.array, minLoc, maxLoc, scoreNoIndel, r.gaps); in realignByReversingRef() 188 int[] max=msa.fillLimited(r.bases, ref, 0, ref.length-1, scoreNoIndel, r.gaps); in realignByReversingRef() 370 …max=msa.fillLimited(bases, chacs.array, minLoc, maxLoc, Tools.max(scoreNoIndel, minValidScore), ss… in realign_new() 413 …max=msa.fillLimited(bases, chacs.array, minLoc, maxLoc, Tools.max(scoreNoIndel, minValidScore), ss… in realign_new() 450 …max=msa.fillLimited(bases, chacs.array, minLoc, maxLoc, Tools.max(scoreNoIndel, minValidScore), ss… in realign_new() 522 …int[] max=msa.fillLimited(bases, chacs.array, minLoc, maxLoc, Tools.max(scoreNoIndel, minValidScor… in realign_new() 562 …max=msa.fillLimited(bases, chacs.array, minLoc, maxLoc, Tools.max(scoreNoIndel, minValidScore), ss… in realign_new() 597 …max=msa.fillLimited(bases, chacs.array, minLoc, maxLoc, Tools.max(scoreNoIndel, minValidScore), ss… in realign_new()
|
H A D | MSA.java | 53 …public abstract int[] fillLimited(byte[] read, byte[] ref, int refStartLoc, int refEndLoc, int min… in fillLimited() method in MSA 105 int[] max=fillLimited(read, ref, a, b, minScore, gaps); in fillAndScoreLimited() 109 int[] max=fillLimited(read, ref, a, b, minScore, gaps); in fillAndScoreLimited()
|
H A D | MultiStateAligner11tsJNI.java | 31 int[] max=msa.fillLimited(read, ref, 0, ref.length-1, 0, null); in main() 75 …public final int[] fillLimited(byte[] read, byte[] ref, int refStartLoc, int refEndLoc, int minSco… in fillLimited() method in MultiStateAligner11tsJNI
|
H A D | MultiStateAligner9XFlat.java | 27 int[] max=msa.fillLimited(read, ref, 0, ref.length-1, 0, null); in main() 91 …public final int[] fillLimited(byte[] read, byte[] ref, int refStartLoc, int refEndLoc, int minSco… in fillLimited() method in MultiStateAligner9XFlat
|
H A D | MultiStateAligner9ts.java | 30 int[] max=msa.fillLimited(read, ref, 0, ref.length-1, 0, null); in main() 93 …public final int[] fillLimited(byte[] read, byte[] ref, int refStartLoc, int refEndLoc, int minSco… in fillLimited() method in MultiStateAligner9ts
|
/dports/biology/bbmap/bbmap/current/jgi/ |
H A D | FindPrimers_old.java | 195 max=msa.fillLimited(query.bases, r.bases, a, b, -9999, null); in process()
|