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Searched refs:fill_ulong_zero (Results 1 – 19 of 19) sorted by relevance

/dports/biology/plink/plink-ng-79b2df8c/1.9/
H A Dprettify.c100 static inline void fill_ulong_zero(uintptr_t* ularr, size_t size) { in fill_ulong_zero() function
165 fill_ulong_zero(col_widths, max_col_ct); in scan_column_widths()
192 fill_ulong_zero(&(col_widths[max_col_ct]), max_col_ct); in scan_column_widths()
H A Dplink_cnv.c217 fill_ulong_zero(chrom_code_end + 1, il_chrom_start_small); in cnv_intersect_load()
218 fill_ulong_zero(chrom_code_end + 1, il_chrom_start_large); in cnv_intersect_load()
257 fill_ulong_zero(chrom_code_end + 1, il_chrom_start_small); in cnv_intersect_load()
312 fill_ulong_zero(chrom_code_end + 1, il_chrom_start_large); in cnv_intersect_load()
H A Dplink_set.c884 fill_ulong_zero((bound_top_d128 - bound_bottom_d128) * (128 / BITCT), bitfield_ptr); in save_set_range()
1206 fill_ulong_zero(unfiltered_marker_ctl, marker_bitfield_tmp); in define_sets()
1274 fill_ulong_zero(unfiltered_marker_ctl, marker_bitfield_tmp); in define_sets()
1530 fill_ulong_zero(round_up_pow2(marker_ctp2l, 2), marker_bitfield_tmp); in define_sets()
1532 fill_ulong_zero(round_up_pow2(marker_ctp2l, 4), marker_bitfield_tmp); in define_sets()
1587 fill_ulong_zero(marker_ctp2l, marker_bitfield_tmp); in define_sets()
1904 fill_ulong_zero(range_start / BITCT, include_bitfield); in unpack_set()
1913 fill_ulong_zero(marker_ctl - uii / BITCT, &(include_bitfield[uii / BITCT])); in unpack_set()
1917 fill_ulong_zero(marker_ctl, include_bitfield); in unpack_set()
2002 fill_ulong_zero(marker_ctl, filtered_union); in extract_set_union()
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H A Dplink_ld.c6414 fill_ulong_zero(unfiltered_marker_ctl, targets); in show_tags()
7241 fill_ulong_zero(unfiltered_marker_ctl, in_haploblock); in haploview_blocks()
10551 fill_ulong_zero(window_maxl, zmiss); in indep_pairphase()
11441 fill_ulong_zero(sample_ctl2, prevsnp_ptr); in test_mishap()
11472 fill_ulong_zero(sample_ctl2, nextsnp_ptr); in test_mishap()
11999 fill_ulong_zero(idx1_block_size * marker_ctv, result_bitfield); in construct_ld_map()
12006 fill_ulong_zero(marker_ctv, load2_bitfield); in construct_ld_map()
12927 fill_ulong_zero(marker_ct, (uintptr_t*)clump_entries); in clump_reports()
13014 fill_ulong_zero(annot_ct_p2_ctl, col_bitfield); in clump_reports()
13253 fill_ulong_zero(marker_ctl, cur_bitfield); in clump_reports()
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H A Dplink_homozyg.c788 fill_ulong_zero(end_bidx - cur_bidx, &(roh_slot[cur_bidx])); in initialize_roh_slot()
1667 fill_ulong_zero(max_pool_sizel, roh_slot_occupied); in roh_pool()
1671 fill_ulong_zero((((uintptr_t)max_pool_size) * (max_pool_size - 1)) / 2, allelic_match_matrix); in roh_pool()
1704 fill_ulong_zero(BITCT_TO_WORDCT(pool_size), roh_slot_uncached); in roh_pool()
2589 fill_ulong_zero(sample_ctl * window_size, swbuf); in calc_homozyg()
2612 fill_ulong_zero(window_size * sample_ctl, swbuf); in calc_homozyg()
2634 fill_ulong_zero(sample_ctl, swbuf_cur); in calc_homozyg()
H A Dplink_family.c840 fill_ulong_zero(10, (uintptr_t*)errstrs); in mendel_error_scan()
3010 fill_ulong_zero(acc4_word_ct, acc4); in dfam_sibship_or_unrelated_perm_calc()
3011 fill_ulong_zero(acc8_word_ct, acc8); in dfam_sibship_or_unrelated_perm_calc()
3134 fill_ulong_zero(acc4_word_ct, acc4); in dfam_sibship_or_unrelated_perm_calc()
3135 fill_ulong_zero(acc8_word_ct, acc8); in dfam_sibship_or_unrelated_perm_calc()
3517 fill_ulong_zero(acc4_word_ct, acc4); in dfam_perm_thread()
3518 fill_ulong_zero(acc8_word_ct, acc8); in dfam_perm_thread()
3627 fill_ulong_zero(acc4_word_ct, acc4); in dfam_perm_thread()
3628 fill_ulong_zero(acc8_word_ct, acc8); in dfam_perm_thread()
5661 fill_ulong_zero(flip_ctl, dummy_flip); in qfam()
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H A Dplink_data.c1340 fill_ulong_zero(covar_raw_ctl, covars_active); in load_covars()
1363 fill_ulong_zero(covar_raw_ctl, covars_active); in load_covars()
1417 fill_ulong_zero(sample_ctl, covar_nm); in load_covars()
2970 fill_ulong_zero(sample_ctv2, flip_subset_vec2); in flip_subset_init()
3159 fill_ulong_zero(sample_ctv2, patchbuf); in zeropatch()
3845 fill_ulong_zero(unfiltered_sample_ctl, sex_nm); in load_fam()
3846 fill_ulong_zero(unfiltered_sample_ctl, sex_male); in load_fam()
4380 fill_ulong_zero(sample_ctl2, writebuf); in oxford_to_bed()
8563 fill_ulong_zero(2 * sample_ctv2, base_bitfields); in vcf_to_bed()
9679 fill_ulong_zero(2 * sample_ctv2, base_bitfields); in bcf_to_bed()
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H A Dplink_perm.c70 fill_ulong_zero(QUATERCT_TO_ALIGNED_WORDCT(tot_ct), perm_vec); in generate_cc_perm_vec()
111 fill_ulong_zero(BITCT_TO_WORDCT(tot_ct), perm_vec); in generate_cc_perm1()
H A Dplink_help.c267 fill_ulong_zero(param_ctl * 3, help_ctrl.all_match_arr); in disp_help()
H A Dplink_common.h1908 HEADER_INLINE void fill_ulong_zero(size_t size, uintptr_t* ularr) { in fill_ulong_zero() function
1917 fill_ulong_zero(size, (uintptr_t*)ullarr); in fill_ull_zero()
1929 fill_ulong_zero(size * 2, (uintptr_t*)ullarr); in fill_ull_zero()
H A Dplink_calc.c4746 fill_ulong_zero(sample_ct * (GENOME_MULTIPLEX / BITCT2), geno); in calc_genome()
4747 fill_ulong_zero(sample_ct * (GENOME_MULTIPLEX / BITCT2), masks); in calc_genome()
6531 fill_ulong_zero(sample_ct, mmasks); in calc_rel()
6535 fill_ulong_zero(sample_ct, masks); in calc_rel()
7864 fill_ulong_zero(sample_ct * (MULTIPLEX_2DIST / BITCT), geno); in calc_distance()
7865 fill_ulong_zero(sample_ct * (MULTIPLEX_2DIST / BITCT), masks); in calc_distance()
7867 fill_ulong_zero(sample_ct, geno); in calc_distance()
7868 fill_ulong_zero(sample_ct, masks); in calc_distance()
7953 fill_ulong_zero(sample_ct, mmasks); in calc_distance()
8412 fill_ulong_zero(BITCT_TO_WORDCT(initial_triangle_size), cluster_merge_prevented); in calc_cluster_neighbor()
H A Dplink_glm.c516 fill_ulong_zero(BITCT_TO_WORDCT(cur_batch_size), perm_fails); in glm_linear()
1717 fill_ulong_zero(BITCT_TO_WORDCT(cur_batch_size), perm_fails); in glm_logistic()
3776 fill_ulong_zero(param_raw_ctp2l, active_params); in glm_common_init()
3946 fill_ulong_zero(param_ctl_max, haploid_params); in glm_common_init()
3962 fill_ulong_zero(param_ctl_max, g_joint_test_params); in glm_common_init()
7241 fill_ulong_zero(param_raw_ctp2l, active_params); in glm_linear_nosnp()
7287 fill_ulong_zero(ulii, joint_test_params); in glm_linear_nosnp()
8104 fill_ulong_zero(param_raw_ctp2l, active_params); in glm_logistic_nosnp()
8151 fill_ulong_zero(ulii, joint_test_params); in glm_logistic_nosnp()
H A Dplink_misc.c183 fill_ulong_zero(unfiltered_sample_ctl, pheno_c); in makepheno_load()
273 fill_ulong_zero(unfiltered_sample_ctl, pheno_c); in load_pheno()
453 fill_ulong_zero(sample_uidx, pheno_c); in convert_tail_pheno()
5597 fill_ulong_zero(extract_ctl, duplicate_id_bitfield); in meta_analysis()
6021 fill_ulong_zero(file_ct64 * (8 / BYTECT), (uintptr_t*)cur_data_ptr); in meta_analysis()
6059 fill_ulong_zero(extract_ctl, duplicate_id_bitfield); in meta_analysis()
H A Dplink_filter.c1225 fill_ulong_zero(sorted_sample_ctl, loadbuf); in load_oblig_missing()
1682 fill_ulong_zero(unfiltered_sample_ctl, newly_excluded); in mind_filter()
2717 fill_ulong_zero(om_cluster_ctl, cur_omidxs); in write_missingness_reports()
H A Dplink_common.c3470 fill_ulong_zero(maj_end - maj_start - 1, &(bitarr[maj_start + 1])); in clear_bits()
3730 fill_ulong_zero(ct, *ulp_ptr); in bigstack_calloc_ul()
3784 fill_ulong_zero(ct, *ulp_ptr); in bigstack_end_calloc_ul()
4408 fill_ulong_zero(CHROM_MASK_WORDS, chrom_info_ptr->chrom_mask); in init_species()
4419 fill_ulong_zero(CHROM_MASK_WORDS, chrom_info_ptr->haploid_mask); in init_species()
8200 fill_ulong_zero(BITCT_TO_WORDCT(name_ct), (uintptr_t*)seen_idxs); in string_range_list_to_bitarr_alloc()
9372 fill_ulong_zero(BITCT_TO_WORDCT(sample_ct), missing_bitfield); in extract_collapsed_missing_bitfield()
10435 fill_ulong_zero(uljj, &(perm_buf[perm_idx + (ulii * perm_ct)])); in generate_perm1_interleaved()
H A Dplink_lasso.c1137 fill_ulong_zero(unfiltered_marker_ctl, polymorphic_markers); in lasso()
H A Dplink_dosage.c1578 fill_ulong_zero(sample_ctl, batch_samples); in plink1_dosage()
H A Dplink.c1958 fill_ulong_zero(unfiltered_sample_ctl, pheno_c); in plink()
1981 fill_ulong_zero(unfiltered_sample_ctl, pheno_nm); in plink()
4017 fill_ulong_zero(CHROM_MASK_INITIAL_WORDS, chrom_exclude); in main()
/dports/biology/plink/plink-ng-79b2df8c/2.0/
H A Dpgen_compress.cc153 fill_ulong_zero(BitCtToWordCt(sample_ct), sample_include); in main()