Searched refs:final_mismatched_bases (Results 1 – 3 of 3) sorted by relevance
382 short final_mismatched_bases; member
2068 …1->raw_result, rec1->cigar , rec1->linear_position, read_text_1, raw_r1 -> final_mismatched_bases);2073 …2->raw_result, rec2->cigar , rec2->linear_position, read_text_2, raw_r2 -> final_mismatched_bases);2724 int final_MISMATCH = final_realignments[realign_index].final_mismatched_bases;
3426 realign_res -> final_mismatched_bases = mismatch_bases; in finalise_explain_CIGAR()