| /dports/biology/mothur/mothur-1.46.1/source/calculators/ |
| H A D | metroig.cpp | 14 … n, string stub) : sigmaA(sigA), sigmaB(sigB), sigmaS(sigS), nIters(n), fitIters(fi), outFileStub(… in MetroIG()
219 …if (fitIters != 0) { bestSample = dutils.fitSigma(acceptanceRates, parameterResults, fitIters, &tP… in getValues()
|
| H A D | metrologstudent.cpp | 12 …, sigmaV(sigv), sigmaN(sign), sigmaS(sigS), nIters(n), outFileStub(st), fitIters(fi), DiversityCal… in MetroLogStudent()
229 …if (fitIters != 0) { bestSample = dutils.fitSigma(acceptanceRates, parameterResults, fitIters, &tP… in getValues()
|
| H A D | metrosichel.cpp | 12 …, sigmaB(sigb), sigmaG(sigg), sigmaS(sigS), nIters(n), outFileStub(st), fitIters(af), DiversityCal… in MetroSichel()
219 …if (fitIters != 0) { bestSample = dutils.fitSigma(acceptanceRates, parameterResults, fitIters, &tP… in getValues()
|
| H A D | metrolognormal.cpp | 14 …: sigmaX(sigx), sigmaY(sigy), sigmaS(sigS), nIters(n), outFileStub(st), fitIters(fi), DiversityCal… in MetroLogNormal()
243 …if (fitIters != 0) { bestSample = dutils.fitSigma(acceptanceRates, parameterResults, fitIters, &tP… in getValues()
|
| H A D | metroig.hpp | 30 int nIters, fitIters; member in MetroIG
|
| H A D | metrolognormal.hpp | 32 int nIters, fitIters; member in MetroLogNormal
|
| H A D | metrologstudent.hpp | 32 int nIters, fitIters; member in MetroLogStudent
|
| H A D | metrosichel.hpp | 33 int nIters, fitIters; member in MetroSichel
|
| H A D | diversityutils.cpp | 831 …ma(vector<double> acceptanceRates, vector<double> parameterResults, int fitIters, t_Params *ptPara… in fitSigma() argument
950 double increment = badFactor / (double)(fitIters); in fitSigma()
952 sigmaA -= (increment*(fitIters/(double)2.0)); in fitSigma()
953 … for (int i = 0; i < factors.size(); i++) { factors[i] = badFactors[i] / (double)(fitIters); } in fitSigma()
956 double increment = factors[i] / (double)(fitIters); in fitSigma()
957 sigmaA -= (increment*(fitIters/(double)2.0)); in fitSigma()
960 for (int i = 0; i < factors.size(); i++) { factors[i] /= (double)(fitIters); } in fitSigma()
970 while ((thisBestLow.acceptRatio > 0.05) && (numTries < fitIters)) { in fitSigma()
991 if (numTries == fitIters) { in fitSigma()
|
| /dports/biology/mothur/mothur-1.46.1/source/commands/ |
| H A D | diversityestimatorcommand.hpp | 42 int iters, burn, burnSample, fitIters; member in EstimatorSingleCommand
|
| H A D | diversityestimatorcommand.cpp | 283 util.mothurConvert(temp, fitIters); in EstimatorSingleCommand()
696 …if (calc == "ig") { diversityCalc = new MetroIG(fitIters, sigmaAlpha, sigmaBeta, sigmaS, ite… in runSamplingCalcs()
697 …else if (calc == "ln") { diversityCalc = new MetroLogNormal(fitIters, sigmaAlpha, sigmaBeta, sigm… in runSamplingCalcs()
698 …else if (calc == "ls") { diversityCalc = new MetroLogStudent(fitIters, sigmaAlpha, sigmaBeta, sig… in runSamplingCalcs()
699 …else if (calc == "si") { diversityCalc = new MetroSichel(fitIters, sigmaAlpha, sigmaBeta, sigmaN,… in runSamplingCalcs()
|