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Searched refs:from_upperleft (Results 1 – 2 of 2) sorted by relevance

/dports/biology/subread/subread-2.0.2-source/src/
H A Dgene-algorithms.c1944 short from_upperleft; in dynamic_align() local
1945 if (i>0 && j>0) from_upperleft = table[i-1][j-1] + is_matched_ij; in dynamic_align()
1946 else from_upperleft = is_matched_ij; in dynamic_align()
1947 if ((i ==0 || j ==0) && (i+j>0)) from_upperleft += DPALIGN_CREATEGAP_PENALTY; in dynamic_align()
1949 if (from_upperleft <=from_left || from_upperleft <= from_upper) in dynamic_align()
1952 table[i][j]=max(0,max(from_upper, max(from_left, from_upperleft))); in dynamic_align()
H A Dcore-indel.c4663 short from_upperleft; in core_dynamic_align() local
4665 if (i>0 && j>0) from_upperleft = table[i-1][j-1] + is_matched_ij; in core_dynamic_align()
4666 else if(i==0 && j==0) from_upperleft = is_matched_ij; in core_dynamic_align()
4667 else from_upperleft = -9999; in core_dynamic_align()
4669 if (from_upperleft == from_upper && from_upperleft > from_left) in core_dynamic_align()
4674 else if(from_upperleft == from_left && from_upperleft > from_upper) in core_dynamic_align()
4679 else if(from_upperleft > from_left && from_upperleft > from_upper) in core_dynamic_align()
4682 table[i][j] = from_upperleft; in core_dynamic_align()
4684 else if(from_upperleft == from_left && from_upperleft == from_upper) in core_dynamic_align()
4687 table[i][j] = from_upperleft; in core_dynamic_align()