Searched refs:fsi_begin (Results 1 – 2 of 2) sorted by relevance
| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/gnomon/ |
| H A D | gnomon_model.hpp | 631 …CAlignMap(TSignedSeqPos orig_a, TSignedSeqPos orig_b, TInDels::const_iterator fsi_begin, const TIn… in CAlignMap() argument
634 if(fsi_begin != fsi_end) { in CAlignMap()
635 if(fsi_begin->Loc() == orig_a && !fsi_begin->IsMismatch()) { in CAlignMap()
636 _ASSERT(!fsi_begin->IsInsertion()); // no reason to have insertion in CAlignMap()
643 InsertIndelRangesForInterval(orig_a, orig_b, 0, fsi_begin, fsi_end, atype, btype, "", ""); in CAlignMap()
725 …_a, TSignedSeqPos orig_b, TSignedSeqPos edit_a, TInDels::const_iterator fsi_begin, TInDels::const_…
|
| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/gnomon/ |
| H A D | gnomon_seq.cpp | 411 …ignedSeqPos orig_a, TSignedSeqPos orig_b, TSignedSeqPos edit_a, TInDels::const_iterator fsi_begin, in InsertIndelRangesForInterval() argument
414 TInDels::const_iterator fsi = fsi_begin; in InsertIndelRangesForInterval()
563 TInDels::const_iterator fsi_begin = indels.begin(); in CAlignMap() local
566 m_orig_ranges.reserve(exons.size()+(fsi_end-fsi_begin)); in CAlignMap()
567 m_edited_ranges.reserve(exons.size()+(fsi_end-fsi_begin)); in CAlignMap()
607 …estart = InsertIndelRangesForInterval(start, stop, estart, fsi_begin, fsi_end, type_a, type_b, gse… in CAlignMap()
|