Searched refs:fst_window_size (Results 1 – 4 of 4) sorted by relevance
45 fst_window_size = -1; in parameters()227 …else if (in_str == "--fst-window-size") { fst_window_size = atoi(get_arg(i+1).c_str()); i++; } … in read_parameters()408 …if (fst_window_size != defaults.fst_window_size) LOG.printLOG("\t--fst-window-size " + output_log:… in print_params()
69 int fst_window_size; variable
114 …if (params.fst_window_size <= 0 && params.weir_fst_populations.size() > 0) vf->output_weir_and_coc… in main()
3641 int fst_window_size = params.fst_window_size; in output_windowed_weir_and_cockerham_fst() local3645 if ((fst_window_step <= 0) || (fst_window_step > fst_window_size)) in output_windowed_weir_and_cockerham_fst()3646 fst_window_step = fst_window_size; in output_windowed_weir_and_cockerham_fst()3807 int first = (int) ceil((pos - fst_window_size)/double(fst_window_step)); in output_windowed_weir_and_cockerham_fst()3861 << (s*fst_window_step + fst_window_size) << "\t" in output_windowed_weir_and_cockerham_fst()