/dports/biology/star/STAR-2.7.9a/source/ |
H A D | Transcript_convertGenomeCigar.cpp | 6 cBit = std::upper_bound(cBit, coBl.end(), array<uint64,3> {gStart,0,0}, in convertGenomeCigar() 15 A.gStart=gStart-coBl[icB][0]+coBl[icB][2]; in convertGenomeCigar() 20 uint64 gEnd=gStart;//gEnd is end+1 in convertGenomeCigar() 116 A.gStart += nOp[BAM_CIGAR_M]+nOp[BAM_CIGAR_D]+nOp[BAM_CIGAR_N]; in convertGenomeCigar() 152 if (A.gStart >= genOut.genomeOut.nMinusStrandOffset) {//convert to +strand in convertGenomeCigar() 154 A.gStart = 2*genOut.genomeOut.nMinusStrandOffset - (A.gStart+A.gLength); in convertGenomeCigar() 158 A.Chr = genOut.chrBin[A.gStart >> genOut.pGe.gChrBinNbits]; in convertGenomeCigar()
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H A D | extendAlign.cpp | 6 bool extendAlign( char* R, char* G, uint rStart, uint gStart, int dR, int dG, uint L, uint Lprev, u… in extendAlign() argument 16 G=G+gStart; in extendAlign() 25 if ((gStart+iG)==(uint)(-1) || G[iG]==5) {//prohibit extension through chr boundary in extendAlign() 63 …if ((gStart+iG)==(uint)(-1) || G[iG]==5 || R[iS]==MARK_FRAG_SPACER_BASE) break; //no extension thr… in extendAlign()
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H A D | stitchWindowAligns.cpp | 44 … if ( extendAlign(R, mapGen.G, trA.rStart-1, trA.gStart-1, -1, -1, trA.rStart, tR2-trA.rStart+1, \ in stitchWindowAligns() 52 trA.exons[0][EX_G] = trA.gStart = trA.gStart - trAstep1.extendL; in stitchWindowAligns() 94 trA.gLength = tG2+1-trA.gStart; in stitchWindowAligns() 320 trAi.exons[0][EX_G]=trAi.gStart=WA[iA][WA_gStart]; in stitchWindowAligns()
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H A D | extendAlign.h | 5 bool extendAlign( char* R, char* G, uint rStart, uint gStart, int dR, int dG, uint L, uint Lprev, u…
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H A D | ReadAlign_stitchWindowSeeds.cpp | 119 trA.exons[0][EX_G] = trA.gStart = WA[iW][iS1][WA_gStart]; in stitchWindowSeeds() 155 trA.gStart = trA.exons[0][EX_G]; in stitchWindowSeeds() 194 trA.gLength = trA.exons[trA.nExons-1][EX_G]+1-trA.gStart; in stitchWindowSeeds()
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H A D | Transcript.cpp | 17 rStart=0; roStart=0; rLength=0; gStart=0; gLength=0; //read and genomic coordinates in reset()
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H A D | Transcript.h | 35 …uint rStart, roStart, rLength, gStart, gLength, cStart; //read, original read, and genomic start/l… variable
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/dports/java/openjdk11/jdk11u-jdk-11.0.13-8-1/test/jdk/sanity/client/lib/SwingSet3/src/com/sun/swingset3/demos/spinner/ |
H A D | Palette.java | 44 private final double gStart; field in Palette 48 double gStart, double bStart, int rSteps, int gSteps, int bSteps) { in Palette() argument 52 this.gStart = gStart; in Palette() 73 double cosG = Math.cos(i * 2 * Math.PI / gRange + gStart); in fillColorTable()
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/dports/java/openjdk13/jdk13u-jdk-13.0.10-1-1/test/jdk/sanity/client/lib/SwingSet3/src/com/sun/swingset3/demos/spinner/ |
H A D | Palette.java | 44 private final double gStart; field in Palette 48 double gStart, double bStart, int rSteps, int gSteps, int bSteps) { in Palette() argument 52 this.gStart = gStart; in Palette() 73 double cosG = Math.cos(i * 2 * Math.PI / gRange + gStart); in fillColorTable()
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/dports/java/openjdk12/openjdk-jdk12u-jdk-12.0.2-10-4/test/jdk/sanity/client/lib/SwingSet3/src/com/sun/swingset3/demos/spinner/ |
H A D | Palette.java | 44 private final double gStart; field in Palette 48 double gStart, double bStart, int rSteps, int gSteps, int bSteps) { in Palette() argument 52 this.gStart = gStart; in Palette() 73 double cosG = Math.cos(i * 2 * Math.PI / gRange + gStart); in fillColorTable()
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/dports/java/openjdk15/jdk15u-jdk-15.0.6-1-1/test/jdk/sanity/client/lib/SwingSet3/src/com/sun/swingset3/demos/spinner/ |
H A D | Palette.java | 44 private final double gStart; field in Palette 48 double gStart, double bStart, int rSteps, int gSteps, int bSteps) { in Palette() argument 52 this.gStart = gStart; in Palette() 73 double cosG = Math.cos(i * 2 * Math.PI / gRange + gStart); in fillColorTable()
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/dports/java/openjdk16/jdk16u-jdk-16.0.2-7-1/test/jdk/sanity/client/lib/SwingSet3/src/com/sun/swingset3/demos/spinner/ |
H A D | Palette.java | 44 private final double gStart; field in Palette 48 double gStart, double bStart, int rSteps, int gSteps, int bSteps) { in Palette() argument 52 this.gStart = gStart; in Palette() 73 double cosG = Math.cos(i * 2 * Math.PI / gRange + gStart); in fillColorTable()
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/dports/java/openjdk11-jre/jdk11u-jdk-11.0.13-8-1/test/jdk/sanity/client/lib/SwingSet3/src/com/sun/swingset3/demos/spinner/ |
H A D | Palette.java | 44 private final double gStart; field in Palette 48 double gStart, double bStart, int rSteps, int gSteps, int bSteps) { in Palette() argument 52 this.gStart = gStart; in Palette() 73 double cosG = Math.cos(i * 2 * Math.PI / gRange + gStart); in fillColorTable()
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/dports/java/openjdk14/jdk14u-jdk-14.0.2-12-1/test/jdk/sanity/client/lib/SwingSet3/src/com/sun/swingset3/demos/spinner/ |
H A D | Palette.java | 44 private final double gStart; field in Palette 48 double gStart, double bStart, int rSteps, int gSteps, int bSteps) { in Palette() argument 52 this.gStart = gStart; in Palette() 73 double cosG = Math.cos(i * 2 * Math.PI / gRange + gStart); in fillColorTable()
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/dports/java/openjdk17/jdk17u-jdk-17.0.1-12-1/test/jdk/sanity/client/lib/SwingSet3/src/com/sun/swingset3/demos/spinner/ |
H A D | Palette.java | 44 private final double gStart; field in Palette 48 double gStart, double bStart, int rSteps, int gSteps, int bSteps) { in Palette() argument 52 this.gStart = gStart; in Palette() 73 double cosG = Math.cos(i * 2 * Math.PI / gRange + gStart); in fillColorTable()
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/dports/math/qposases/qpOASES-3.2.1/testing/cpp/ |
H A D | test_gradientShift.cpp | 56 real_t gStart=-16.4; in main() local 72 g[0]=gStart; in main() 89 fprintf( stdFile, "#g[0] test interval: %f < g[0] < %f\n",gStart,g[0] ); in main()
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/dports/graphics/lightzone/LightZone-4.1.8-3-g36e87773/lightcrafts/extsrc/com/lightcrafts/mediax/jai/ |
H A D | ColorSpaceJAI.java | 946 int gStart = src.bandOffsets[1] ; in RGBToCIEXYZByte() local 953 gStart += srcLineStride, bStart += srcLineStride) { in RGBToCIEXYZByte() 954 for (int i = 0, rIndex = rStart, gIndex = gStart, bIndex = bStart ; in RGBToCIEXYZByte() 1024 int gStart = src.bandOffsets[1] ; in RGBToCIEXYZShort() local 1034 gStart += srcLineStride, bStart += srcLineStride) { in RGBToCIEXYZShort() 1100 int gStart = src.bandOffsets[1] ; in RGBToCIEXYZInt() local 1110 gStart += srcLineStride, bStart += srcLineStride) { in RGBToCIEXYZInt() 1170 int gStart = src.bandOffsets[1] ; in RGBToCIEXYZFloat() local 1180 gStart += srcLineStride, bStart += srcLineStride) { in RGBToCIEXYZFloat() 1239 int gStart = src.bandOffsets[1] ; in RGBToCIEXYZDouble() local [all …]
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H A D | IHSColorSpace.java | 486 int gStart = src.bandOffsets[1] ; in fromRGBByte() local 493 gStart += srcLineStride, bStart += srcLineStride) { in fromRGBByte() 494 for (int i = 0, rIndex = rStart, gIndex = gStart, bIndex = bStart ; in fromRGBByte() 611 int gStart = src.bandOffsets[1] ; in fromRGBShort() local 618 gStart += srcLineStride, bStart += srcLineStride) { in fromRGBShort() 736 int gStart = src.bandOffsets[1] ; in fromRGBInt() local 743 gStart += srcLineStride, bStart += srcLineStride) { in fromRGBInt() 855 int gStart = src.bandOffsets[1] ; in fromRGBFloat() local 862 gStart += srcLineStride, bStart += srcLineStride) { in fromRGBFloat() 974 int gStart = src.bandOffsets[1] ; in fromRGBDouble() local [all …]
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/dports/math/singular/Singular-Release-4-2-1/Singular/dyn_modules/gfanlib/ |
H A D | tropicalVariety.cc | 80 poly gStart = startingIdeal->m[0]; in tropicalVariety() local 81 std::set<gfan::ZCone> maxCones = tropicalVariety(gStart,startingRing,¤tStrategy); in tropicalVariety() 128 poly gStart = startingIdeal->m[0]; in tropicalVariety() local 129 std::set<gfan::ZCone> maxCones = tropicalVariety(gStart,startingRing,¤tStrategy); in tropicalVariety()
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/dports/devel/ga/ga-5.8/ga++/testing/ |
H A D | testmult.cc | 30 DoublePrecision gTime=0.0, gStart; variable 113 gStart = CLOCK_(); in test() 130 gTime += CLOCK_()-gStart; in test()
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/dports/devel/bullet/bullet3-3.21/src/Bullet3OpenCL/RigidBody/kernels/ |
H A D | batchingKernelsNew.cl | 91 …3Contact4Data* gConstraints, __global const u32* gN, __global const u32* gStart, int m_staticIdx ) 97 const int m_start = gStart[wgIdx]; 144 …3Contact4Data* gConstraints, __global const u32* gN, __global const u32* gStart, __global int* bat… 149 const int m_start = gStart[wgIdx];
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/dports/devel/py-bullet3/bullet3-3.21/src/Bullet3OpenCL/RigidBody/kernels/ |
H A D | batchingKernelsNew.cl | 91 …3Contact4Data* gConstraints, __global const u32* gN, __global const u32* gStart, int m_staticIdx ) 97 const int m_start = gStart[wgIdx]; 144 …3Contact4Data* gConstraints, __global const u32* gN, __global const u32* gStart, __global int* bat… 149 const int m_start = gStart[wgIdx];
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/dports/devel/godot/godot-3.2.3-stable/thirdparty/bullet/Bullet3OpenCL/RigidBody/kernels/ |
H A D | batchingKernelsNew.cl | 91 …3Contact4Data* gConstraints, __global const u32* gN, __global const u32* gStart, int m_staticIdx ) 97 const int m_start = gStart[wgIdx]; 144 …3Contact4Data* gConstraints, __global const u32* gN, __global const u32* gStart, __global int* bat… 149 const int m_start = gStart[wgIdx];
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/dports/devel/godot-tools/godot-3.2.3-stable/thirdparty/bullet/Bullet3OpenCL/RigidBody/kernels/ |
H A D | batchingKernelsNew.cl | 91 …3Contact4Data* gConstraints, __global const u32* gN, __global const u32* gStart, int m_staticIdx ) 97 const int m_start = gStart[wgIdx]; 144 …3Contact4Data* gConstraints, __global const u32* gN, __global const u32* gStart, __global int* bat… 149 const int m_start = gStart[wgIdx];
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/dports/devel/ga/ga-5.8/global/testing/ |
H A D | testmult.c | 27 DoublePrecision gTime=0.0, gStart; variable 113 gStart = MP_TIMER(); in test() 134 gTime += MP_TIMER()-gStart; in test()
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