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Searched refs:gStart (Results 1 – 25 of 62) sorted by relevance

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/dports/biology/star/STAR-2.7.9a/source/
H A DTranscript_convertGenomeCigar.cpp6 cBit = std::upper_bound(cBit, coBl.end(), array<uint64,3> {gStart,0,0}, in convertGenomeCigar()
15 A.gStart=gStart-coBl[icB][0]+coBl[icB][2]; in convertGenomeCigar()
20 uint64 gEnd=gStart;//gEnd is end+1 in convertGenomeCigar()
116 A.gStart += nOp[BAM_CIGAR_M]+nOp[BAM_CIGAR_D]+nOp[BAM_CIGAR_N]; in convertGenomeCigar()
152 if (A.gStart >= genOut.genomeOut.nMinusStrandOffset) {//convert to +strand in convertGenomeCigar()
154 A.gStart = 2*genOut.genomeOut.nMinusStrandOffset - (A.gStart+A.gLength); in convertGenomeCigar()
158 A.Chr = genOut.chrBin[A.gStart >> genOut.pGe.gChrBinNbits]; in convertGenomeCigar()
H A DextendAlign.cpp6 bool extendAlign( char* R, char* G, uint rStart, uint gStart, int dR, int dG, uint L, uint Lprev, u… in extendAlign() argument
16 G=G+gStart; in extendAlign()
25 if ((gStart+iG)==(uint)(-1) || G[iG]==5) {//prohibit extension through chr boundary in extendAlign()
63 …if ((gStart+iG)==(uint)(-1) || G[iG]==5 || R[iS]==MARK_FRAG_SPACER_BASE) break; //no extension thr… in extendAlign()
H A DstitchWindowAligns.cpp44 … if ( extendAlign(R, mapGen.G, trA.rStart-1, trA.gStart-1, -1, -1, trA.rStart, tR2-trA.rStart+1, \ in stitchWindowAligns()
52 trA.exons[0][EX_G] = trA.gStart = trA.gStart - trAstep1.extendL; in stitchWindowAligns()
94 trA.gLength = tG2+1-trA.gStart; in stitchWindowAligns()
320 trAi.exons[0][EX_G]=trAi.gStart=WA[iA][WA_gStart]; in stitchWindowAligns()
H A DextendAlign.h5 bool extendAlign( char* R, char* G, uint rStart, uint gStart, int dR, int dG, uint L, uint Lprev, u…
H A DReadAlign_stitchWindowSeeds.cpp119 trA.exons[0][EX_G] = trA.gStart = WA[iW][iS1][WA_gStart]; in stitchWindowSeeds()
155 trA.gStart = trA.exons[0][EX_G]; in stitchWindowSeeds()
194 trA.gLength = trA.exons[trA.nExons-1][EX_G]+1-trA.gStart; in stitchWindowSeeds()
H A DTranscript.cpp17 rStart=0; roStart=0; rLength=0; gStart=0; gLength=0; //read and genomic coordinates in reset()
H A DTranscript.h35 …uint rStart, roStart, rLength, gStart, gLength, cStart; //read, original read, and genomic start/l… variable
/dports/java/openjdk11/jdk11u-jdk-11.0.13-8-1/test/jdk/sanity/client/lib/SwingSet3/src/com/sun/swingset3/demos/spinner/
H A DPalette.java44 private final double gStart; field in Palette
48 double gStart, double bStart, int rSteps, int gSteps, int bSteps) { in Palette() argument
52 this.gStart = gStart; in Palette()
73 double cosG = Math.cos(i * 2 * Math.PI / gRange + gStart); in fillColorTable()
/dports/java/openjdk13/jdk13u-jdk-13.0.10-1-1/test/jdk/sanity/client/lib/SwingSet3/src/com/sun/swingset3/demos/spinner/
H A DPalette.java44 private final double gStart; field in Palette
48 double gStart, double bStart, int rSteps, int gSteps, int bSteps) { in Palette() argument
52 this.gStart = gStart; in Palette()
73 double cosG = Math.cos(i * 2 * Math.PI / gRange + gStart); in fillColorTable()
/dports/java/openjdk12/openjdk-jdk12u-jdk-12.0.2-10-4/test/jdk/sanity/client/lib/SwingSet3/src/com/sun/swingset3/demos/spinner/
H A DPalette.java44 private final double gStart; field in Palette
48 double gStart, double bStart, int rSteps, int gSteps, int bSteps) { in Palette() argument
52 this.gStart = gStart; in Palette()
73 double cosG = Math.cos(i * 2 * Math.PI / gRange + gStart); in fillColorTable()
/dports/java/openjdk15/jdk15u-jdk-15.0.6-1-1/test/jdk/sanity/client/lib/SwingSet3/src/com/sun/swingset3/demos/spinner/
H A DPalette.java44 private final double gStart; field in Palette
48 double gStart, double bStart, int rSteps, int gSteps, int bSteps) { in Palette() argument
52 this.gStart = gStart; in Palette()
73 double cosG = Math.cos(i * 2 * Math.PI / gRange + gStart); in fillColorTable()
/dports/java/openjdk16/jdk16u-jdk-16.0.2-7-1/test/jdk/sanity/client/lib/SwingSet3/src/com/sun/swingset3/demos/spinner/
H A DPalette.java44 private final double gStart; field in Palette
48 double gStart, double bStart, int rSteps, int gSteps, int bSteps) { in Palette() argument
52 this.gStart = gStart; in Palette()
73 double cosG = Math.cos(i * 2 * Math.PI / gRange + gStart); in fillColorTable()
/dports/java/openjdk11-jre/jdk11u-jdk-11.0.13-8-1/test/jdk/sanity/client/lib/SwingSet3/src/com/sun/swingset3/demos/spinner/
H A DPalette.java44 private final double gStart; field in Palette
48 double gStart, double bStart, int rSteps, int gSteps, int bSteps) { in Palette() argument
52 this.gStart = gStart; in Palette()
73 double cosG = Math.cos(i * 2 * Math.PI / gRange + gStart); in fillColorTable()
/dports/java/openjdk14/jdk14u-jdk-14.0.2-12-1/test/jdk/sanity/client/lib/SwingSet3/src/com/sun/swingset3/demos/spinner/
H A DPalette.java44 private final double gStart; field in Palette
48 double gStart, double bStart, int rSteps, int gSteps, int bSteps) { in Palette() argument
52 this.gStart = gStart; in Palette()
73 double cosG = Math.cos(i * 2 * Math.PI / gRange + gStart); in fillColorTable()
/dports/java/openjdk17/jdk17u-jdk-17.0.1-12-1/test/jdk/sanity/client/lib/SwingSet3/src/com/sun/swingset3/demos/spinner/
H A DPalette.java44 private final double gStart; field in Palette
48 double gStart, double bStart, int rSteps, int gSteps, int bSteps) { in Palette() argument
52 this.gStart = gStart; in Palette()
73 double cosG = Math.cos(i * 2 * Math.PI / gRange + gStart); in fillColorTable()
/dports/math/qposases/qpOASES-3.2.1/testing/cpp/
H A Dtest_gradientShift.cpp56 real_t gStart=-16.4; in main() local
72 g[0]=gStart; in main()
89 fprintf( stdFile, "#g[0] test interval: %f < g[0] < %f\n",gStart,g[0] ); in main()
/dports/graphics/lightzone/LightZone-4.1.8-3-g36e87773/lightcrafts/extsrc/com/lightcrafts/mediax/jai/
H A DColorSpaceJAI.java946 int gStart = src.bandOffsets[1] ; in RGBToCIEXYZByte() local
953 gStart += srcLineStride, bStart += srcLineStride) { in RGBToCIEXYZByte()
954 for (int i = 0, rIndex = rStart, gIndex = gStart, bIndex = bStart ; in RGBToCIEXYZByte()
1024 int gStart = src.bandOffsets[1] ; in RGBToCIEXYZShort() local
1034 gStart += srcLineStride, bStart += srcLineStride) { in RGBToCIEXYZShort()
1100 int gStart = src.bandOffsets[1] ; in RGBToCIEXYZInt() local
1110 gStart += srcLineStride, bStart += srcLineStride) { in RGBToCIEXYZInt()
1170 int gStart = src.bandOffsets[1] ; in RGBToCIEXYZFloat() local
1180 gStart += srcLineStride, bStart += srcLineStride) { in RGBToCIEXYZFloat()
1239 int gStart = src.bandOffsets[1] ; in RGBToCIEXYZDouble() local
[all …]
H A DIHSColorSpace.java486 int gStart = src.bandOffsets[1] ; in fromRGBByte() local
493 gStart += srcLineStride, bStart += srcLineStride) { in fromRGBByte()
494 for (int i = 0, rIndex = rStart, gIndex = gStart, bIndex = bStart ; in fromRGBByte()
611 int gStart = src.bandOffsets[1] ; in fromRGBShort() local
618 gStart += srcLineStride, bStart += srcLineStride) { in fromRGBShort()
736 int gStart = src.bandOffsets[1] ; in fromRGBInt() local
743 gStart += srcLineStride, bStart += srcLineStride) { in fromRGBInt()
855 int gStart = src.bandOffsets[1] ; in fromRGBFloat() local
862 gStart += srcLineStride, bStart += srcLineStride) { in fromRGBFloat()
974 int gStart = src.bandOffsets[1] ; in fromRGBDouble() local
[all …]
/dports/math/singular/Singular-Release-4-2-1/Singular/dyn_modules/gfanlib/
H A DtropicalVariety.cc80 poly gStart = startingIdeal->m[0]; in tropicalVariety() local
81 std::set<gfan::ZCone> maxCones = tropicalVariety(gStart,startingRing,&currentStrategy); in tropicalVariety()
128 poly gStart = startingIdeal->m[0]; in tropicalVariety() local
129 std::set<gfan::ZCone> maxCones = tropicalVariety(gStart,startingRing,&currentStrategy); in tropicalVariety()
/dports/devel/ga/ga-5.8/ga++/testing/
H A Dtestmult.cc30 DoublePrecision gTime=0.0, gStart; variable
113 gStart = CLOCK_(); in test()
130 gTime += CLOCK_()-gStart; in test()
/dports/devel/bullet/bullet3-3.21/src/Bullet3OpenCL/RigidBody/kernels/
H A DbatchingKernelsNew.cl91 …3Contact4Data* gConstraints, __global const u32* gN, __global const u32* gStart, int m_staticIdx )
97 const int m_start = gStart[wgIdx];
144 …3Contact4Data* gConstraints, __global const u32* gN, __global const u32* gStart, __global int* bat…
149 const int m_start = gStart[wgIdx];
/dports/devel/py-bullet3/bullet3-3.21/src/Bullet3OpenCL/RigidBody/kernels/
H A DbatchingKernelsNew.cl91 …3Contact4Data* gConstraints, __global const u32* gN, __global const u32* gStart, int m_staticIdx )
97 const int m_start = gStart[wgIdx];
144 …3Contact4Data* gConstraints, __global const u32* gN, __global const u32* gStart, __global int* bat…
149 const int m_start = gStart[wgIdx];
/dports/devel/godot/godot-3.2.3-stable/thirdparty/bullet/Bullet3OpenCL/RigidBody/kernels/
H A DbatchingKernelsNew.cl91 …3Contact4Data* gConstraints, __global const u32* gN, __global const u32* gStart, int m_staticIdx )
97 const int m_start = gStart[wgIdx];
144 …3Contact4Data* gConstraints, __global const u32* gN, __global const u32* gStart, __global int* bat…
149 const int m_start = gStart[wgIdx];
/dports/devel/godot-tools/godot-3.2.3-stable/thirdparty/bullet/Bullet3OpenCL/RigidBody/kernels/
H A DbatchingKernelsNew.cl91 …3Contact4Data* gConstraints, __global const u32* gN, __global const u32* gStart, int m_staticIdx )
97 const int m_start = gStart[wgIdx];
144 …3Contact4Data* gConstraints, __global const u32* gN, __global const u32* gStart, __global int* bat…
149 const int m_start = gStart[wgIdx];
/dports/devel/ga/ga-5.8/global/testing/
H A Dtestmult.c27 DoublePrecision gTime=0.0, gStart; variable
113 gStart = MP_TIMER(); in test()
134 gTime += MP_TIMER()-gStart; in test()

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