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Searched refs:g_bigstack_end (Results 1 – 25 of 35) sorted by relevance

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/dports/biology/plink/plink-ng-79b2df8c/2.0/
H A Dplink2_cmdline.h428 extern unsigned char* g_bigstack_end;
439 return g_bigstack_end - g_bigstack_base; in bigstack_left()
673 g_bigstack_end = S_CAST(unsigned char*, new_end); in BigstackEndReset()
686 assert(g_bigstack_base <= g_bigstack_end); in BigstackFinalizeW()
692 assert(g_bigstack_base <= g_bigstack_end); in BigstackFinalizeU32()
698 assert(g_bigstack_base <= g_bigstack_end); in BigstackFinalizeU64()
704 assert(g_bigstack_base <= g_bigstack_end); in BigstackFinalizeC()
710 assert(g_bigstack_base <= g_bigstack_end); in BigstackFinalizeCp()
734 g_bigstack_end -= size; in bigstack_end_alloc_raw()
735 return g_bigstack_end; in bigstack_end_alloc_raw()
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H A Dplink2_psam.cc57 unsigned char* bigstack_end_mark = g_bigstack_end; in LoadPsam()
89 g_bigstack_end -= kMaxIdSlen; in LoadPsam()
90 unsigned char* tmp_bigstack_end = g_bigstack_end; in LoadPsam()
686 g_bigstack_end = bigstack_end_mark; in LoadPsam()
711 bigstack_end_mark = g_bigstack_end; in LoadPsam()
1156 unsigned char* tmp_bigstack_end = g_bigstack_end; in LoadPhenos()
H A Dplink2_pvar.cc806 unsigned char* bigstack_end_mark = g_bigstack_end; in LoadPvar()
1199 g_bigstack_end = tmp_alloc_base; in LoadPvar()
1892 unsigned char* read_iter = g_bigstack_end; in LoadPvar()
1971 …uintptr_t* allele_idx_read_iter = R_CAST(uintptr_t*, &(g_bigstack_end[kLoadPvarBlockSize * sizeof(… in LoadPvar()
1985 …double* cms_read_iter = R_CAST(double*, &(g_bigstack_end[read_iter_stride_base * (cms_start_block … in LoadPvar()
2023 …ChrIdx* chr_idxs_read_iter = R_CAST(ChrIdx*, &(g_bigstack_end[read_iter_stride_base * (chr_idxs_st… in LoadPvar()
H A Dplink2_random.cc173 ctx.arena_top = g_bigstack_end; in RandomizeBigstack()
H A Dplink2_adjust.cc562 unsigned char* bigstack_end_mark = g_bigstack_end; in AdjustFile()
784 unsigned char* tmp_alloc_end = g_bigstack_end; in AdjustFile()
H A Dplink2_set.cc351 unsigned char* bigstack_end_mark = g_bigstack_end; in ExtractExcludeRange()
H A Dplink2_data.cc2321 unsigned char* bigstack_end_mark = g_bigstack_end;
3015 …dx_offsets_stop = R_CAST(uintptr_t*, RoundDownPow2(R_CAST(uintptr_t, g_bigstack_end), kCacheline)); in PlanMultiallelicJoin()
3146 …dx_offsets_stop = R_CAST(uintptr_t*, RoundDownPow2(R_CAST(uintptr_t, g_bigstack_end), kCacheline)); in PlanMultiallelicSplit()
3454 unsigned char* bigstack_end_mark = g_bigstack_end; in ParseInfoHeader()
3539 bigstack_end_mark = g_bigstack_end; in ParseInfoHeader()
3543 (g_bigstack_base > g_bigstack_end) || in ParseInfoHeader()
4073 unsigned char* bigstack_end_mark = g_bigstack_end; in MakeFilterHtable()
4092 unsigned char* tmp_alloc_end = g_bigstack_end; in MakeFilterHtable()
7168 assert(g_bigstack_base <= g_bigstack_end);
7543 assert(str_store_iter <= R_CAST(char*, g_bigstack_end)); in PvarInfoReloadInterval()
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H A Dplink2_matrix_calc.cc3931 unsigned char* bigstack_end_mark = g_bigstack_end; in CalcGrm()
5444 arena_top = g_bigstack_end; in CalcPca()
5463 if (arena_top == g_bigstack_end) { in CalcPca()
5713 unsigned char* bigstack_end_mark = g_bigstack_end; in ScoreReport()
5788 unsigned char* tmp_alloc_end = g_bigstack_end; in ScoreReport()
5854 (g_bigstack_base > g_bigstack_end) || in ScoreReport()
6032 unsigned char* bigstack_end_mark2 = g_bigstack_end; in ScoreReport()
7261 unsigned char* bigstack_end_mark = g_bigstack_end; in Vscore()
7366 unsigned char* tmp_alloc_end = g_bigstack_end; in Vscore()
7704 assert(g_bigstack_base <= g_bigstack_end); in Vscore()
H A Dplink2_fasta.cc525 unsigned char* tmp_alloc_end = g_bigstack_end;
H A Dplink2_cmdline.cc524 unsigned char* g_bigstack_end = nullptr; variable
597 …g_bigstack_end = &(bigstack_initial_base[RoundDownPow2(malloc_size_mib * 1048576 - 576 - S_CAST(ui… in InitBigstack()
599 uintptr_t* one_char_iter = R_CAST(uintptr_t*, g_bigstack_end); in InitBigstack()
614 g_one_char_strs = R_CAST(const char*, g_bigstack_end); in InitBigstack()
3023 …return PopulateIdHtableMt(g_bigstack_end, subset_mask, item_ids, item_ct, store_all_dups, id_htabl… in AllocAndPopulateIdHtableMt()
H A Dplink2_misc.cc263 char* alloc_end = R_CAST(char*, g_bigstack_end); in UpdateVarNames()
397 unsigned char* tmp_alloc_end = g_bigstack_end; in UpdateVarAlleles()
627 char* alloc_end = R_CAST(char*, g_bigstack_end); in RecoverVarIds()
1230 char* cat_name_write_max = R_CAST(char*, g_bigstack_end); in Plink1ClusterImport()
3044 unsigned char* bigstack_end_mark = g_bigstack_end; in InitHistogramFromFileOrCommalist()
6380 unsigned char* bigstack_end_mark = g_bigstack_end; in SampleCounts()
6578 …g_bigstack_end = R_CAST(unsigned char*, RoundDownPow2(R_CAST(uintptr_t, g_bigstack_end), kCachelin… in SampleCounts()
6664 … assert(S_CAST(uintptr_t, cur_alloc - g_bigstack_end) == thread_xalloc_vec_ct * kBytesPerVec); in SampleCounts()
8442 unsigned char* bigstack_end_mark = g_bigstack_end; in Sdiff()
8932 …reterr = CheckIdUniqueness(g_bigstack_base, g_bigstack_end, variant_include, variant_ids, variant_… in WriteSnplist()
H A Dplink2_filter.cc655 unsigned char* bigstack_end_mark = g_bigstack_end; in RmDup()
729 unsigned char* tmp_alloc_end = g_bigstack_end; in RmDup()
1564 unsigned char* bigstack_end_mark = g_bigstack_end; in RequirePheno()
4079 unsigned char* bigstack_end = g_bigstack_end;
H A Dplink2_import.cc2657 unsigned char* bigstack_end_mark = g_bigstack_end; in VcfToPgen()
6979 unsigned char* bigstack_end_mark = g_bigstack_end; in BcfToPgen()
7565 unsigned char* bigstack_end_mark2 = g_bigstack_end; in BcfToPgen()
11542 unsigned char* bigstack_end_mark = g_bigstack_end; in OxBgenToPgen()
14218 unsigned char* bigstack_end_mark = g_bigstack_end; in LoadMap()
14380 g_bigstack_end = g_bigstack_base; in LoadMap()
14408 unsigned char* read_iter = g_bigstack_end; // bugfix (30 May 2018) in LoadMap()
14410 bigstack_end_mark = g_bigstack_end; in LoadMap()
14466 unsigned char* bigstack_end_mark = g_bigstack_end; in Plink1DosageToPgen()
14719 unsigned char* bigstack_end_mark2 = g_bigstack_end; in Plink1DosageToPgen()
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H A Dplink2_ld.cc1211 uint32_t* subcontig_info_limit = &(R_CAST(uint32_t*, g_bigstack_end)[-3]); in LdPruneSubcontigSplitAll()
1572 unsigned char* bigstack_end_mark = g_bigstack_end; in LdPrune()
1636 …reterr = CheckIdUniqueness(g_bigstack_base, g_bigstack_end, variant_include, variant_ids, variant_… in LdPrune()
H A Dplink2_export.cc69 …reterr = PopulateIdHtableMt(g_bigstack_end, variant_include, variant_ids, variant_ct, 0, variant_i…
76 unsigned char* tmp_alloc_end = g_bigstack_end;
153 tmp_alloc_end = g_bigstack_end;
7546 unsigned char* tmp_alloc_end = g_bigstack_end;
9824 unsigned char* bigstack_end_mark = g_bigstack_end;
/dports/biology/plink/plink-ng-79b2df8c/1.9/
H A Dplink_set.c593 unsigned char* bigstack_end_mark = g_bigstack_end; in extract_exclude_range()
993 unsigned char* bigstack_end_mark = g_bigstack_end; in define_sets()
1187 bigstack_end_mark2 = g_bigstack_end; in define_sets()
2124 unsigned char* bigstack_end_mark = g_bigstack_end; in setdefs_compress()
2206 unsigned char* bigstack_end_mark = g_bigstack_end; in load_range_list_sortpos()
2404 unsigned char* bigstack_end_mark = g_bigstack_end; in annotate()
3243 unsigned char* bigstack_end_mark = g_bigstack_end; in gene_report()
3423 gene_match_list_end = (uint64_t*)g_bigstack_end; in gene_report()
H A Dbgen_to_gen.c553 …g_bigstack_end = &(bigstack_initial_base[(malloc_size_mb * 1048576 - (uintptr_t)(bigstack_initial_… in init_bigstack()
H A Dplink_cnv.c105 uint64_t* il_large = (uint64_t*)g_bigstack_end; // grows down in cnv_intersect_load()
927 unsigned char* bigstack_end_mark = g_bigstack_end; in plink_cnv()
H A Dplink_rserve.c105 if (((uintptr_t)g_bigstack_end) - ((uintptr_t)inbuf_start) < MAXLINELEN) { in rserve_call()
H A Dplink_common.h1097 extern unsigned char* g_bigstack_end;
1100 return (((uintptr_t)g_bigstack_end) - ((uintptr_t)g_bigstack_base)); in bigstack_left()
1159 g_bigstack_end = (unsigned char*)new_end; in bigstack_end_reset()
1173 g_bigstack_end = (unsigned char*)(((uintptr_t)unaligned_end) & (~(END_ALLOC_CHUNK_M1 * ONELU))); in bigstack_end_set()
H A Dplink_cluster.c64 unsigned char* bigstack_end_mark = g_bigstack_end; in load_clusters()
175 bigstack_end_mark2 = g_bigstack_end; in load_clusters()
1474 uintptr_t bigstack_pre_end_address = ((uintptr_t)g_bigstack_end) - MAXLINELEN; in cluster_enforce_match()
1857 if (((uintptr_t)g_bigstack_end) < (uintptr_t)(&(dptr[non_null_cov_ct]))) { in cluster_enforce_match()
H A Dplink_filter.c1165 unsigned char* bigstack_end_mark = g_bigstack_end; in load_oblig_missing()
1368 if (((unsigned char*)zc_entries_end) == g_bigstack_end) { in load_oblig_missing()
H A Dplink_data.c1202 unsigned char* bigstack_end_mark = g_bigstack_end; in load_covars()
1709 unsigned char* bigstack_end_mark = g_bigstack_end; in write_covars()
2118 unsigned char* bigstack_end_mark = g_bigstack_end; in zero_cluster_init()
5220 unsigned char* bigstack_end_mark = g_bigstack_end; in ped_to_bed_multichar_allele()
7039 unsigned char* bigstack_end_mark = g_bigstack_end; in transposed_to_bed()
9101 unsigned char* bigstack_end_mark = g_bigstack_end; in bcf_to_bed()
11464 unsigned char* bigstack_end_mark = g_bigstack_end; in recode_allele_load()
11968 unsigned char* bigstack_end_mark = g_bigstack_end; in recode()
15982 unsigned char* bigstack_end_mark = g_bigstack_end; in merge_datasets()
H A Dplink_family.c100 unsigned char* bigstack_end_mark = g_bigstack_end; in get_trios_and_families()
2550 unsigned char* bigstack_end_mark = g_bigstack_end; in get_sibship_info()
2613 bigstack_end_mark2 = g_bigstack_end; in get_sibship_info()
H A Dplink_misc.c3431 uint32_t* uidx_list_end = (uint32_t*)g_bigstack_end; in list_duplicate_vars()
4213 unsigned char* bigstack_end_mark = g_bigstack_end; in score_report()
5184 unsigned char* bigstack_end_mark = g_bigstack_end; in meta_analysis()

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