/dports/biology/plink/plink-ng-79b2df8c/1.9/ |
H A D | plink.c | 2226 sprintf(g_logbuf, "Error: Missing %s parameter.\n", flag_name); in enforce_param_ct_range() 3438 fputs(g_logbuf, stderr); in main() 3525 fputs(g_logbuf, stderr); in main() 3599 sprintf(g_logbuf, "Error: Unrecognized flag ('%s').\n", argv[uii]); in main() 3601 fputs(g_logbuf, stderr); in main() 3928 fputs(g_logbuf, stderr); in main() 8032 sprintf(g_logbuf, "Error: Conflicting --%s parameters.\n", argptr); in main() 10347 sprintf(g_logbuf, "Error: --%s requires permutation.\n", argptr); in main() 13319 sprintf(g_logbuf, "Random number seed: %u\n", ujj); in main() 13320 logstr(g_logbuf); in main() [all …]
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H A D | plink_cnv.c | 130 sprintf(g_logbuf, "Error: Line %" PRIuPTR " of %s is pathologically long.\n", line_idx, cift_str); in cnv_intersect_load() 165 …sprintf(g_logbuf, "Error: Invalid bp coordinate on line %" PRIuPTR " of %s.\n", line_idx, cift_str… in cnv_intersect_load() 169 …sprintf(g_logbuf, "Error: Invalid bp coordinate on line %" PRIuPTR " of %s.\n", line_idx, cift_str… in cnv_intersect_load() 222 sprintf(g_logbuf, "Error: Empty %s.\n", cift_str); in cnv_intersect_load() 524 sprintf(g_logbuf, "Error: Line %" PRIuPTR " of .cnv file is pathologically long.\n", line_idx); in cnv_make_map() 559 sprintf(g_logbuf, "Error: Invalid bp coordinate on line %" PRIuPTR " of .cnv file.\n", line_idx); in cnv_make_map() 605 sprintf(g_logbuf, "Error: Invalid probe count on line %" PRIuPTR " of .cnv file.\n", line_idx); in cnv_make_map() 804 …sprintf(g_logbuf, "Error: Invalid bp coordinate on line %" PRIuPTR " of .cnv.map file.\n", line_id… in validate_cnv_map() 852 sprintf(g_logbuf, "Error: Line %" PRIuPTR " of .cnv.map is pathologically long.\n", line_idx); in validate_cnv_map() 999 sprintf(g_logbuf, "Autogenerating missing %s ... ", mapname); in plink_cnv() [all …]
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H A D | plink_dosage.c | 179 … sprintf(g_logbuf, "Error: Line %" PRIuPTR " of --score file is pathologically long.\n", line_idx); in dosage_load_score_files() 255 … sprintf(g_logbuf, "Error: Line %" PRIuPTR " of --score file is pathologically long.\n", line_idx); in dosage_load_score_files() 367 …sprintf(g_logbuf, "Error: Line %" PRIuPTR " of --q-score-range data file is pathologically long.\n… in dosage_load_score_files() 471 …sprintf(g_logbuf, "Error: Line %" PRIuPTR " of --score file has fewer tokens than expected.\n", li… in dosage_load_score_files() 1214 …sprintf(g_logbuf, "Error: Invalid batch number on line %" PRIuPTR " of --dosage list file.\n", lin… in plink1_dosage() 1243 …sprintf(g_logbuf, "Error: Line %" PRIuPTR " of --dosage list file has more tokens than expected.\n… in plink1_dosage() 1256 …sprintf(g_logbuf, "Error: Line %" PRIuPTR " of --dosage list file is pathologically long.\n", line… in plink1_dosage() 1579 bufptr = memcpya(g_logbuf, "--dosage: Reading from ", 23); in plink1_dosage() 1627 sprintf(g_logbuf, "Error: '%s' appears multiple times.\n", bufptr); in plink1_dosage() 1670 … sprintf(g_logbuf, "Error: %s is empty.\n", &(fnames[(file_idx + file_idx_start) * max_fn_len])); in plink1_dosage() [all …]
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H A D | plink_misc.c | 4629 fputs(g_logbuf, stdout); in score_report() 4890 logstr(g_logbuf); in score_report() 4959 sprintf(g_logbuf, "Error: %s is empty.\n", fname); in meta_analysis_open_and_read_header() 5085 sprintf(g_logbuf, "Error: No variant ID field found in %s.\n", fname); in meta_analysis_open_and_read_header() 5088 sprintf(g_logbuf, "Error: No effect size field found in %s.\n", fname); in meta_analysis_open_and_read_header() 5091 sprintf(g_logbuf, "Error: No standard error field found in %s.\n", fname); in meta_analysis_open_and_read_header() 5094 sprintf(g_logbuf, "Error: No p-value field found in %s.\n", fname); in meta_analysis_open_and_read_header() 5101 sprintf(g_logbuf, "Error: No CHR field found in %s.\n", fname); in meta_analysis_open_and_read_header() 5104 sprintf(g_logbuf, "Error: No BP field found in %s.\n", fname); in meta_analysis_open_and_read_header() 5107 sprintf(g_logbuf, "Error: No A1 allele field found in %s.\n", fname); in meta_analysis_open_and_read_header() [all …]
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H A D | plink_data.c | 780 sprintf(g_logbuf, "Error: No variants in %s.\n", ftype_str); in load_bim() 11751 logstr(g_logbuf); in recode_beagle_new_chrom() 11789 logstr(g_logbuf); in open_and_write_fastphase_header() 13208 fputs(g_logbuf, stdout); in recode() 13519 fputs(g_logbuf, stdout); in recode() 13899 sprintf(g_logbuf, "--recode list to %s ... ", outname); in recode() 14083 fputs(g_logbuf, stdout); in recode() 14144 logstr(g_logbuf); in recode() 14316 logstr(g_logbuf); in recode() 14935 logstr(g_logbuf); in merge_bim_scan() [all …]
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H A D | plink_set.c | 304 …sprintf(g_logbuf, "Error: Line %" PRIuPTR " of %s file is pathologically long.\n", line_idx, file_… in load_range_list() 447 …sprintf(g_logbuf, "Error: Line %" PRIuPTR " of %s file is pathologically long.\n", line_idx, file_… in load_range_list() 472 …sprintf(g_logbuf, "Error: Invalid chromosome code on line %" PRIuPTR " of %s file.\n", line_idx, f… in load_range_list() 2365 …sprintf(g_logbuf, "Error: Line %" PRIuPTR " of %s is pathologically long.\n", line_idx, file_descr… in scrape_extra_chroms() 2525 sprintf(g_logbuf, "Error: %s is empty.\n", aip->snps_fname); in annotate() 2607 …sprintf(g_logbuf, "Error: Too many unique attributes in %s (max 2147483648).\n", aip->attrib_fname… in annotate() 2635 sprintf(g_logbuf, "Error: No attributes in %s.\n", aip->attrib_fname); in annotate() 2901 sprintf(g_logbuf, "Error: Duplicate column header '%s' in %s.\n", bufptr, aip->fname); in annotate() 2961 …sprintf(g_logbuf, "Error: Line %" PRIuPTR " of %s is pathologically long.\n", line_idx, aip->fname… in annotate() 3382 sprintf(g_logbuf, "Error: Too many genes in %s (max 2147483648).\n", glist); in gene_report() [all …]
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H A D | plink_cluster.c | 125 …sprintf(g_logbuf, "Error: Line %" PRIuPTR " of --keep-clusters file is pathologically long.\n", li… in load_clusters() 237 …sprintf(g_logbuf, "Error: Line %" PRIuPTR " of --remove-clusters file is pathologically long.\n", … in load_clusters() 316 sprintf(g_logbuf, "Error: Line %" PRIuPTR " of --within file is pathologically long.\n", line_idx); in load_clusters() 1392 …sprintf(g_logbuf, "Error: Invalid PPC test value on line %" PRIuPTR " of --read-genome file.\n", l… in read_genome() 1402 …sprintf(g_logbuf, "Error: Invalid IBS value on line %" PRIuPTR " of --read-genome file.\n", line_i… in read_genome() 1455 …sprintf(g_logbuf, "Error: Line %" PRIuPTR " of --read-genome file is pathologically long.\n", line… in read_genome() 1541 …sprintf(g_logbuf, "Error: Line %" PRIuPTR " of --match-type file is pathologically long.\n", line_… in cluster_enforce_match() 1606 sprintf(g_logbuf, "Error: Line %" PRIuPTR " of --match file is pathologically long.\n", line_idx); in cluster_enforce_match() 1774 sprintf(g_logbuf, "Error: Line %" PRIuPTR " of --qt file is pathologically long.\n", line_idx); in cluster_enforce_match() 1780 sprintf(g_logbuf, "Error: Line %" PRIuPTR " of --qt file has a non-numeric value.\n", line_idx); in cluster_enforce_match() [all …]
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H A D | plink_filter.c | 103 …sprintf(g_logbuf, "Error: Line %" PRIuPTR " of --%s file is pathologically long.\n", line_idx, kee… in keep_or_remove() 215 …sprintf(g_logbuf, "Error: --%ssnps variant '%s' not found.\n", do_exclude? "exclude-" : "", cur_va… in snps_flag() 375 …sprintf(g_logbuf, "Error: Excessively long ID in --%s file.\n", do_exclude? "exclude" : "extract"); in extract_exclude_flag_norange() 583 sprintf(g_logbuf, "Error: Line %" PRIuPTR" of --attrib file is pathologically long.\n", line_idx); in filter_attrib() 812 …sprintf(g_logbuf, "Error: Line %" PRIuPTR" of --attrib-indiv file is pathologically long.\n", line… in filter_attrib_sample() 822 …sprintf(g_logbuf, "Error: Line %" PRIuPTR " of --attrib-indiv file has fewer tokens than\nexpected… in filter_attrib_sample() 946 …sprintf(g_logbuf, "Error: Line %" PRIuPTR " of --qual-scores file is pathologically long.\n", line… in filter_qual_scores() 999 …sprintf(g_logbuf, "--qual-scores: %" PRIuPTR " variant%s remaining.\n", marker_ct, (marker_ct == 1… in filter_qual_scores() 1010 …sprintf(g_logbuf, "Error: Line %" PRIuPTR " of --qual-scores file has fewer tokens than expected.\… in filter_qual_scores() 1492 …sprintf(g_logbuf, "Error: Line %" PRIuPTR " of --filter file is pathologically long.\n", line_idx); in filter_samples_file() [all …]
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H A D | plink_common.h | 936 extern char g_logbuf[]; 986 #define LOGPRINTF(...) sprintf(g_logbuf, __VA_ARGS__); logprintb(); 988 #define LOGERRPRINTF(...) sprintf(g_logbuf, __VA_ARGS__); logerrprintb(); 996 #define LOGPREPRINTFWW(...) sprintf(g_logbuf, __VA_ARGS__); wordwrapb(0); 998 #define LOGPRINTFWW(...) sprintf(g_logbuf, __VA_ARGS__); wordwrapb(0); logprintb(); 1000 #define LOGERRPRINTFWW(...) sprintf(g_logbuf, __VA_ARGS__); wordwrapb(0); logerrprintb(); 1003 #define LOGPRINTFWW5(...) sprintf(g_logbuf, __VA_ARGS__); wordwrapb(5); logprintb(); 1006 #define UNSTABLE(val) sptr = strcpya(&(g_logbuf[9]), val); goto main_unstable_disabled
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H A D | plink_rserve.c | 114 sprintf(g_logbuf, "Error: Line %" PRIuPTR " of --R file is pathologically long.\n", line_idx); in rserve_call()
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/dports/biology/plink/plink-ng-79b2df8c/2.0/ |
H A D | plink2.cc | 1052 reterr = PgrValidate(&simple_pgr, genovec_buf, g_logbuf); in Plink2Core() 3042 snprintf(g_logbuf, kLogbufSize, "Error: Invalid --%s mode '%s'.\n", flagname_p, mode_str); in ParseFreqSelector() 3813 snprintf(g_logbuf, kLogbufSize, "Error: Invalid --aperm beta '%s'.\n", cur_modif); 3958 snprintf(g_logbuf, kLogbufSize, "Error: Invalid --bcf argument '%s'.\n", cur_modif); 5329 snprintf(g_logbuf, kLogbufSize, "Error: Invalid --glm argument '%s'.\n", cur_modif); 5415 snprintf(g_logbuf, kLogbufSize, "Error: Invalid --gen argument '%s'.\n", cur_modif); 6195 snprintf(g_logbuf, kLogbufSize, "Error: Invalid --ld argument '%s'.\n", cur_modif); 6275 char* write_iter = strcpya_k(g_logbuf, "Error: Invalid --make-bed argument '"); 6964 snprintf(g_logbuf, kLogbufSize, "Error: Invalid --mac argument '%s'.\n", cur_modif); 9783 snprintf(g_logbuf, kLogbufSize, "Random number seed: %u\n", seed); [all …]
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H A D | plink2_set.cc | 56 …snprintf(g_logbuf, kLogbufSize, "Error: Line %" PRIuPTR " of %s has fewer tokens than expected.\n"… in LoadIntervalBed() 70 …snprintf(g_logbuf, kLogbufSize, "Error: Invalid chromosome code on line %" PRIuPTR " of %s.\n", li… in LoadIntervalBed() 197 …snprintf(g_logbuf, kLogbufSize, "Error: Line %" PRIuPTR " of %s has fewer tokens than expected.\n"… in LoadIntervalBed() 207 …snprintf(g_logbuf, kLogbufSize, "Error: Invalid chromosome code on line %" PRIuPTR " of %s.\n", li… in LoadIntervalBed() 230 …snprintf(g_logbuf, kLogbufSize, "Error: Invalid range start position on line %" PRIuPTR " of %s.\n… in LoadIntervalBed() 237 …snprintf(g_logbuf, kLogbufSize, "Error: Invalid range end position on line %" PRIuPTR " of %s.\n",… in LoadIntervalBed() 241 …snprintf(g_logbuf, kLogbufSize, "Error: Range end position smaller than range start on line %" PRI… in LoadIntervalBed()
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H A D | plink2_fasta.cc | 32 char* write_iter = strcpya_k(g_logbuf, "Error: Contig '"); 39 char* write_iter = strcpya_k(g_logbuf, "Warning: Contig '"); 118 …char* write_iter = strcpya_k(g_logbuf, "Error: --ref-from-fa wants to change reference allele assi… 137 char* write_iter = strcpya_k(g_logbuf, "Error: Reference allele at "); 164 char* write_iter = strcpya_k(g_logbuf, "Error: Contig '"); in VNormalizeContig() 224 char* write_iter = strcpya_k(g_logbuf, "Error: Variant at "); in VNormalizeContig() 282 char* write_iter = strcpya_k(g_logbuf, "Error: Variant at "); in VNormalizeContig() 339 char* write_iter = strcpya_k(g_logbuf, "Error: Variant at "); in VNormalizeContig() 557 …snprintf(g_logbuf, kLogbufSize, "Error: Unexpected character at beginning of line %" PRIuPTR " of … 590 …snprintf(g_logbuf, kLogbufSize, "Error: Duplicate contig name '%s' in --fa file.\n", chr_name_star… [all …]
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H A D | plink2_psam.cc | 173 char* write_iter = strcpya_k(g_logbuf, "Error: Duplicate column header '"); in LoadPsam() 201 … snprintf(g_logbuf, kLogbufSize, "Error: --pheno-name range is inconsistent with %s.\n", psamname); in LoadPsam() 234 …snprintf(g_logbuf, kLogbufSize, "Error: No IID column on line %" PRIuPTR " of %s.\n", line_idx, ps… in LoadPsam() 238 … snprintf(g_logbuf, kLogbufSize, "Error: --pheno-name range is inconsistent with %s.\n", psamname); in LoadPsam() 456 …snprintf(g_logbuf, kLogbufSize, "Error: Invalid IID '0' on line %" PRIuPTR " of %s.\n", line_idx, … in LoadPsam() 909 …snprintf(g_logbuf, kLogbufSize, "Error: \"--%s iid-only\" file has a FID column.\n", (affection_01… in LoadPhenos() 915 …snprintf(g_logbuf, kLogbufSize, "Error: Second column header in %s must be 'IID'.\n", pheno_fname); in LoadPhenos() 996 char* write_iter = strcpya_k(g_logbuf, "Error: '"); in LoadPhenos() 1099 …snprintf(g_logbuf, kLogbufSize, "Error: Duplicate phenotype/covariate ID '%s'.\n", duplicate_pheno… in LoadPhenos() 1173 snprintf(g_logbuf, kLogbufSize, "Error: Duplicate sample ID in %s.\n", pheno_fname); in LoadPhenos() [all …]
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H A D | plink2_filter.cc | 53 snprintf(g_logbuf, kLogbufSize, "Error: --from variant '%s' not found.\n", varid_from); in FromToFlag() 59 …snprintf(g_logbuf, kLogbufSize, "Error: --from variant ID '%s' appears multiple times.\n", varid_f… in FromToFlag() 69 snprintf(g_logbuf, kLogbufSize, "Error: --to variant '%s' not found.\n", varid_to); in FromToFlag() 73 …snprintf(g_logbuf, kLogbufSize, "Error: --to variant ID '%s' appears multiple times.\n", varid_to); in FromToFlag() 2021 … snprintf(g_logbuf, kLogbufSize, "Error: '%s' is not a categorical phenotype.\n", cat_phenoname); in KeepRemoveCats() 2038 … snprintf(g_logbuf, kLogbufSize, "Error: '%s' is not a categorical covariate.\n", cat_phenoname); in KeepRemoveCats() 4100 …snprintf(g_logbuf, kLogbufSize, "Error: Fewer lines than expected in %s.\n", allele_flag_info->fna… 4215 char* write_iter = strcpya_k(g_logbuf, "Warning: "); 4228 logputs_silent(g_logbuf); 4241 char* write_iter = strcpya_k(g_logbuf, "Warning: "); [all …]
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H A D | plink2_adjust.cc | 586 snprintf(g_logbuf, kLogbufSize, "Error: %s is empty.\n", in_fname); in AdjustFile() 657 …snprintf(g_logbuf, kLogbufSize, "Error: TEST column present in %s, but no test= parameter was prov… in AdjustFile() 661 snprintf(g_logbuf, kLogbufSize, "Error: No chromosome column in %s.\n", in_fname); in AdjustFile() 665 snprintf(g_logbuf, kLogbufSize, "Error: No bp coordinate column in %s.\n", in_fname); in AdjustFile() 669 snprintf(g_logbuf, kLogbufSize, "Error: No REF column in %s.\n", in_fname); in AdjustFile() 673 snprintf(g_logbuf, kLogbufSize, "Error: No ALT column in %s.\n", in_fname); in AdjustFile() 677 … snprintf(g_logbuf, kLogbufSize, "Warning: No A1 column in %s. Omitting from output.\n", in_fname); in AdjustFile() 812 …snprintf(g_logbuf, kLogbufSize, "Error: Invalid bp coordinate on line %" PRIuPTR " of %s.\n", line… in AdjustFile() 903 …snprintf(g_logbuf, kLogbufSize, "Error: Line %" PRIuPTR " of %s has fewer tokens than expected.\n"… in AdjustFile()
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H A D | plink2_pvar.cc | 65 …snprintf(g_logbuf, kLogbufSize, "Error: Header line %" PRIuPTR " of %s has an invalid ##chrSet hap… in ReadChrsetHeaderLine() 83 …snprintf(g_logbuf, kLogbufSize, "Error: Header line %" PRIuPTR " of %s does not have expected ##ch… in ReadChrsetHeaderLine() 95 …snprintf(g_logbuf, kLogbufSize, "Error: Header line %" PRIuPTR " of %s does not have expected ##ch… in ReadChrsetHeaderLine() 860 … snprintf(g_logbuf, kLogbufSize, "Error: Duplicate INFO:PR header line in %s.\n", pvarname); in LoadPvar() 873 … snprintf(g_logbuf, kLogbufSize, "Error: Multiple ##chrSet header lines in %s.\n", pvarname); in LoadPvar() 1008 char* write_iter = strcpya_k(g_logbuf, "Error: Duplicate column header '"); in LoadPvar() 1373 …snprintf(g_logbuf, kLogbufSize, "Error: %s has a split chromosome. Use --make-pgen + --sort-vars t… in LoadPvar() 1492 …snprintf(g_logbuf, kLogbufSize, "Error: Invalid bp coordinate on line %" PRIuPTR " of %s.\n", line… in LoadPvar() 1506 …snprintf(g_logbuf, kLogbufSize, "Error: Invalid QUAL value on line %" PRIuPTR " of %s.\n", line_id… in LoadPvar() 1717 …snprintf(g_logbuf, kLogbufSize, "Error: Invalid centimorgan position on line %" PRIuPTR " of %s.\n… in LoadPvar() [all …]
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H A D | plink2_import.cc | 345 snprintf(g_logbuf, kLogbufSize, "Error: No '%c' in sample ID.\n", id_delim); in ImportSampleId() 454 snprintf(g_logbuf, kLogbufSize, "Error: No '%c' in sample ID.\n", id_delim); in ImportIidFromSampleId() 537 snprintf(g_logbuf, kLogbufSize, "Error: No '%c' in sample ID.\n", id_delim); in VcfSampleLine() 3772 char* write_iter = strcpya_k(g_logbuf, "--vcf: "); in VcfToPgen() 8837 char* write_iter = strcpya_k(g_logbuf, "--bcf: "); in BcfToPgen() 10053 char* write_iter = strcpya_k(g_logbuf, "--data/--gen: "); in OxGenToPgen() 13422 char* write_iter = strcpya_k(g_logbuf, "--bgen: "); in OxBgenToPgen() 13665 snprintf(g_logbuf, kLogbufSize, "Error: %s is empty.\n", hapsname); in OxHapslegendToPgen() 13737 snprintf(g_logbuf, kLogbufSize, "Error: %s is empty.\n", legendname); in OxHapslegendToPgen() 14124 char* write_iter = strcpya_k(g_logbuf, "--haps"); in OxHapslegendToPgen() [all …]
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H A D | plink2_cmdline.cc | 55 char g_logbuf[kLogbufSize]; variable 102 logputs_silent(g_logbuf); in logputsb() 103 fputs(g_logbuf, stdout); in logputsb() 107 logputs_silent(g_logbuf); in logerrputsb() 109 fputs(g_logbuf, stderr); in logerrputsb() 502 fputs(g_logbuf, stdout); in CleanupLogfile() 508 logputs_silent(g_logbuf); in CleanupLogfile() 3532 fputs(g_logbuf, stderr); in CmdlineParsePhase1() 3642 fputs(g_logbuf, stderr); in CmdlineParsePhase1() 3727 fputs(g_logbuf, stderr); in CmdlineParsePhase1() [all …]
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H A D | plink2_misc.cc | 72 snprintf(g_logbuf, kLogbufSize, "Error: Fewer lines than expected in %s.\n", params->fname); in UpdateVarBps() 158 …snprintf(g_logbuf, kLogbufSize, "--update-map: %u value%s updated.\n", hit_ct, (hit_ct == 1)? "" :… in UpdateVarBps() 245 snprintf(g_logbuf, kLogbufSize, "Error: Fewer lines than expected in %s.\n", params->fname); in UpdateVarNames() 344 …snprintf(g_logbuf, kLogbufSize, "--update-name: %u value%s updated.\n", hit_ct, (hit_ct == 1)? "" … in UpdateVarNames() 482 … snprintf(g_logbuf, kLogbufSize, "Error: Duplicate allele code in variant '%s'.\n", varid); in UpdateVarAlleles() 488 … snprintf(g_logbuf, kLogbufSize, "Error: Duplicate allele code in variant '%s'.\n", varid); in UpdateVarAlleles() 567 … snprintf(g_logbuf, kLogbufSize, "Error: Duplicate allele code in variant '%s'.\n", varid); in UpdateVarAlleles() 717 char* write_iter = strcpya_k(g_logbuf, "Error: Duplicate column header '"); in RecoverVarIds() 1399 … snprintf(g_logbuf, kLogbufSize, "--within: %u non-null categories present.\n", nonnull_cat_ct); in Plink1ClusterImport() 1995 …snprintf(g_logbuf, kLogbufSize, "--update-ids: %u sample%s updated.\n", hit_ct, (hit_ct == 1)? "" … in UpdateSampleIds() [all …]
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H A D | plink2_ld.cc | 3181 char* write_poststop = &(g_logbuf[80]); in LdConsole() 3201 write_iter = strcpya_k(g_logbuf, " MAJOR = "); in LdConsole() 3218 write_iter = strcpya_k(g_logbuf, " MINOR = "); in LdConsole() 3224 char* write_ellipsis_start = &(g_logbuf[76]); in LdConsole() 3246 write_iter = strcpya_k(g_logbuf, " (REF = "); in LdConsole() 3260 char* write_iter = u32toa(valid_obs_ct, g_logbuf); in LdConsole() 3293 assert(write_iter - g_logbuf < 78); in LdConsole() 3421 assert(write_iter - g_logbuf < 78); in LdConsole() 3430 write_iter = strcpya_k(g_logbuf, " r^2 = "); in LdConsole() 3440 assert(write_iter - g_logbuf < 79); in LdConsole() [all …]
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H A D | plink2_cmdline.h | 147 extern char g_logbuf[]; 171 vsnprintf(g_logbuf, kLogbufSize, fmt, args); in logprintf() 178 vsnprintf(g_logbuf, kLogbufSize, fmt, args); in logerrprintf() 185 WordWrap(suffix_len, g_logbuf); in WordWrapB() 191 vsnprintf(g_logbuf, kLogbufSize, fmt, args); in logpreprintfww() 198 vsnprintf(g_logbuf, kLogbufSize, fmt, args); in logprintfww() 206 vsnprintf(g_logbuf, kLogbufSize, fmt, args); in logerrprintfww() 215 vsnprintf(g_logbuf, kLogbufSize, fmt, args); in logprintfww5() 224 vsnprintf(g_logbuf, kLogbufSize, fmt, args); in DebugPrintf() 233 vsnprintf(g_logbuf, kLogbufSize, fmt, args); in DPrintf()
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H A D | plink2_matrix_calc.cc | 356 … snprintf(g_logbuf, kLogbufSize, "Error: Duplicate ID '%s' in %s .\n", idbuf, king_cutoff_fprefix); in KingCutoffBatch() 2066 char* write_iter = strcpya_k(g_logbuf, "Results written to "); in CalcKing() 2085 char* write_iter = strcpya_k(g_logbuf, "Results written to "); in CalcKing() 2475 …snprintf(g_logbuf, kLogbufSize, "Error: Identical sample IDs on line %" PRIuPTR " of --king-table-… in KingTableSubsetLoad() 4330 log_write_iter = strcpya_k(g_logbuf, "--make-rel: GRM "); in CalcGrm() 4417 log_write_iter = strcpya_k(g_logbuf, "--make-grm-bin: GRM "); in CalcGrm() 4481 log_write_iter = strcpya_k(g_logbuf, "--make-grm-list: GRM "); in CalcGrm() 5821 …snprintf(g_logbuf, kLogbufSize, "Error: Name too long on line %" PRIuPTR " of --q-score-range rang… in ScoreReport() 6300 char* errwrite_iter = strcpya_k(g_logbuf, "Error: "); in ScoreReport() 6543 …snprintf(g_logbuf, kLogbufSize, "Error: Line %" PRIuPTR " of --score file has an invalid coefficie… in ScoreReport() [all …]
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H A D | plink2_export.cc | 100 …snprintf(g_logbuf, kLogbufSize, "Error: --export-allele variant ID '%s' appears multiple times in … 174 …snprintf(g_logbuf, kLogbufSize, "--export-allele: %u variant%s updated.\n", hit_ct, (hit_ct == 1)?… 3870 char* write_iter = strcpya_k(g_logbuf, "Error: Contig name '"); in ValidVcfContigName() 6056 char* write_iter = strcpya_k(g_logbuf, "Error: Multiple "); in AddToFifHtable() 7385 char* err_write_iter = strcpya_k(g_logbuf, "Warning: Unexpected INFO:END value for variant"); in MakeRlenWarningStr() 7658 … snprintf(g_logbuf, kLogbufSize, "Error: Invalid INFO:%s header line in .pvar file.\n", id_start); 8324 …snprintf(g_logbuf, kLogbufSize, "Error: --export bcf: Multiallelic variant '%s' has a missing ALT … 8409 …snprintf(g_logbuf, kLogbufSize, "Error: --export bcf: Variant '%s' has an INFO key with no corresp… 8413 …snprintf(g_logbuf, kLogbufSize, "Error: --export bcf: Variant '%s' has multiple INFO:%s entries.\n… 8516 logputs_silent(g_logbuf); [all …]
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H A D | plink2_common.cc | 2565 …snprintf(g_logbuf, kLogbufSize, "Error: Invalid --%s parameter '%s'.\n", flagname_p, argvk[cur_par… in ParseChrRanges() 2580 …snprintf(g_logbuf, kLogbufSize, "Error: Invalid --%s chromosome code '%s'.\n", flagname_p, token_b… in ParseChrRanges() 2598 …snprintf(g_logbuf, kLogbufSize, "Error: Invalid --%s chromosome code '%s'.\n", flagname_p, range_e… in ParseChrRanges() 2605 …snprintf(g_logbuf, kLogbufSize, "Error: --%s chromosome code '%s' cannot be the end of a range.\n"… in ParseChrRanges() 2609 …snprintf(g_logbuf, kLogbufSize, "Error: --%s chromosome code '%s' is not greater than '%s'.\n", fl… in ParseChrRanges()
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