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Searched refs:g_logbuf (Results 1 – 25 of 33) sorted by relevance

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/dports/biology/plink/plink-ng-79b2df8c/1.9/
H A Dplink.c2226 sprintf(g_logbuf, "Error: Missing %s parameter.\n", flag_name); in enforce_param_ct_range()
3438 fputs(g_logbuf, stderr); in main()
3525 fputs(g_logbuf, stderr); in main()
3599 sprintf(g_logbuf, "Error: Unrecognized flag ('%s').\n", argv[uii]); in main()
3601 fputs(g_logbuf, stderr); in main()
3928 fputs(g_logbuf, stderr); in main()
8032 sprintf(g_logbuf, "Error: Conflicting --%s parameters.\n", argptr); in main()
10347 sprintf(g_logbuf, "Error: --%s requires permutation.\n", argptr); in main()
13319 sprintf(g_logbuf, "Random number seed: %u\n", ujj); in main()
13320 logstr(g_logbuf); in main()
[all …]
H A Dplink_cnv.c130 sprintf(g_logbuf, "Error: Line %" PRIuPTR " of %s is pathologically long.\n", line_idx, cift_str); in cnv_intersect_load()
165 …sprintf(g_logbuf, "Error: Invalid bp coordinate on line %" PRIuPTR " of %s.\n", line_idx, cift_str… in cnv_intersect_load()
169 …sprintf(g_logbuf, "Error: Invalid bp coordinate on line %" PRIuPTR " of %s.\n", line_idx, cift_str… in cnv_intersect_load()
222 sprintf(g_logbuf, "Error: Empty %s.\n", cift_str); in cnv_intersect_load()
524 sprintf(g_logbuf, "Error: Line %" PRIuPTR " of .cnv file is pathologically long.\n", line_idx); in cnv_make_map()
559 sprintf(g_logbuf, "Error: Invalid bp coordinate on line %" PRIuPTR " of .cnv file.\n", line_idx); in cnv_make_map()
605 sprintf(g_logbuf, "Error: Invalid probe count on line %" PRIuPTR " of .cnv file.\n", line_idx); in cnv_make_map()
804 …sprintf(g_logbuf, "Error: Invalid bp coordinate on line %" PRIuPTR " of .cnv.map file.\n", line_id… in validate_cnv_map()
852 sprintf(g_logbuf, "Error: Line %" PRIuPTR " of .cnv.map is pathologically long.\n", line_idx); in validate_cnv_map()
999 sprintf(g_logbuf, "Autogenerating missing %s ... ", mapname); in plink_cnv()
[all …]
H A Dplink_dosage.c179 … sprintf(g_logbuf, "Error: Line %" PRIuPTR " of --score file is pathologically long.\n", line_idx); in dosage_load_score_files()
255 … sprintf(g_logbuf, "Error: Line %" PRIuPTR " of --score file is pathologically long.\n", line_idx); in dosage_load_score_files()
367 …sprintf(g_logbuf, "Error: Line %" PRIuPTR " of --q-score-range data file is pathologically long.\n… in dosage_load_score_files()
471 …sprintf(g_logbuf, "Error: Line %" PRIuPTR " of --score file has fewer tokens than expected.\n", li… in dosage_load_score_files()
1214 …sprintf(g_logbuf, "Error: Invalid batch number on line %" PRIuPTR " of --dosage list file.\n", lin… in plink1_dosage()
1243 …sprintf(g_logbuf, "Error: Line %" PRIuPTR " of --dosage list file has more tokens than expected.\n… in plink1_dosage()
1256 …sprintf(g_logbuf, "Error: Line %" PRIuPTR " of --dosage list file is pathologically long.\n", line… in plink1_dosage()
1579 bufptr = memcpya(g_logbuf, "--dosage: Reading from ", 23); in plink1_dosage()
1627 sprintf(g_logbuf, "Error: '%s' appears multiple times.\n", bufptr); in plink1_dosage()
1670 … sprintf(g_logbuf, "Error: %s is empty.\n", &(fnames[(file_idx + file_idx_start) * max_fn_len])); in plink1_dosage()
[all …]
H A Dplink_misc.c4629 fputs(g_logbuf, stdout); in score_report()
4890 logstr(g_logbuf); in score_report()
4959 sprintf(g_logbuf, "Error: %s is empty.\n", fname); in meta_analysis_open_and_read_header()
5085 sprintf(g_logbuf, "Error: No variant ID field found in %s.\n", fname); in meta_analysis_open_and_read_header()
5088 sprintf(g_logbuf, "Error: No effect size field found in %s.\n", fname); in meta_analysis_open_and_read_header()
5091 sprintf(g_logbuf, "Error: No standard error field found in %s.\n", fname); in meta_analysis_open_and_read_header()
5094 sprintf(g_logbuf, "Error: No p-value field found in %s.\n", fname); in meta_analysis_open_and_read_header()
5101 sprintf(g_logbuf, "Error: No CHR field found in %s.\n", fname); in meta_analysis_open_and_read_header()
5104 sprintf(g_logbuf, "Error: No BP field found in %s.\n", fname); in meta_analysis_open_and_read_header()
5107 sprintf(g_logbuf, "Error: No A1 allele field found in %s.\n", fname); in meta_analysis_open_and_read_header()
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H A Dplink_data.c780 sprintf(g_logbuf, "Error: No variants in %s.\n", ftype_str); in load_bim()
11751 logstr(g_logbuf); in recode_beagle_new_chrom()
11789 logstr(g_logbuf); in open_and_write_fastphase_header()
13208 fputs(g_logbuf, stdout); in recode()
13519 fputs(g_logbuf, stdout); in recode()
13899 sprintf(g_logbuf, "--recode list to %s ... ", outname); in recode()
14083 fputs(g_logbuf, stdout); in recode()
14144 logstr(g_logbuf); in recode()
14316 logstr(g_logbuf); in recode()
14935 logstr(g_logbuf); in merge_bim_scan()
[all …]
H A Dplink_set.c304 …sprintf(g_logbuf, "Error: Line %" PRIuPTR " of %s file is pathologically long.\n", line_idx, file_… in load_range_list()
447 …sprintf(g_logbuf, "Error: Line %" PRIuPTR " of %s file is pathologically long.\n", line_idx, file_… in load_range_list()
472 …sprintf(g_logbuf, "Error: Invalid chromosome code on line %" PRIuPTR " of %s file.\n", line_idx, f… in load_range_list()
2365 …sprintf(g_logbuf, "Error: Line %" PRIuPTR " of %s is pathologically long.\n", line_idx, file_descr… in scrape_extra_chroms()
2525 sprintf(g_logbuf, "Error: %s is empty.\n", aip->snps_fname); in annotate()
2607 …sprintf(g_logbuf, "Error: Too many unique attributes in %s (max 2147483648).\n", aip->attrib_fname… in annotate()
2635 sprintf(g_logbuf, "Error: No attributes in %s.\n", aip->attrib_fname); in annotate()
2901 sprintf(g_logbuf, "Error: Duplicate column header '%s' in %s.\n", bufptr, aip->fname); in annotate()
2961 …sprintf(g_logbuf, "Error: Line %" PRIuPTR " of %s is pathologically long.\n", line_idx, aip->fname… in annotate()
3382 sprintf(g_logbuf, "Error: Too many genes in %s (max 2147483648).\n", glist); in gene_report()
[all …]
H A Dplink_cluster.c125 …sprintf(g_logbuf, "Error: Line %" PRIuPTR " of --keep-clusters file is pathologically long.\n", li… in load_clusters()
237 …sprintf(g_logbuf, "Error: Line %" PRIuPTR " of --remove-clusters file is pathologically long.\n", … in load_clusters()
316 sprintf(g_logbuf, "Error: Line %" PRIuPTR " of --within file is pathologically long.\n", line_idx); in load_clusters()
1392 …sprintf(g_logbuf, "Error: Invalid PPC test value on line %" PRIuPTR " of --read-genome file.\n", l… in read_genome()
1402 …sprintf(g_logbuf, "Error: Invalid IBS value on line %" PRIuPTR " of --read-genome file.\n", line_i… in read_genome()
1455 …sprintf(g_logbuf, "Error: Line %" PRIuPTR " of --read-genome file is pathologically long.\n", line… in read_genome()
1541 …sprintf(g_logbuf, "Error: Line %" PRIuPTR " of --match-type file is pathologically long.\n", line_… in cluster_enforce_match()
1606 sprintf(g_logbuf, "Error: Line %" PRIuPTR " of --match file is pathologically long.\n", line_idx); in cluster_enforce_match()
1774 sprintf(g_logbuf, "Error: Line %" PRIuPTR " of --qt file is pathologically long.\n", line_idx); in cluster_enforce_match()
1780 sprintf(g_logbuf, "Error: Line %" PRIuPTR " of --qt file has a non-numeric value.\n", line_idx); in cluster_enforce_match()
[all …]
H A Dplink_filter.c103 …sprintf(g_logbuf, "Error: Line %" PRIuPTR " of --%s file is pathologically long.\n", line_idx, kee… in keep_or_remove()
215 …sprintf(g_logbuf, "Error: --%ssnps variant '%s' not found.\n", do_exclude? "exclude-" : "", cur_va… in snps_flag()
375 …sprintf(g_logbuf, "Error: Excessively long ID in --%s file.\n", do_exclude? "exclude" : "extract"); in extract_exclude_flag_norange()
583 sprintf(g_logbuf, "Error: Line %" PRIuPTR" of --attrib file is pathologically long.\n", line_idx); in filter_attrib()
812 …sprintf(g_logbuf, "Error: Line %" PRIuPTR" of --attrib-indiv file is pathologically long.\n", line… in filter_attrib_sample()
822 …sprintf(g_logbuf, "Error: Line %" PRIuPTR " of --attrib-indiv file has fewer tokens than\nexpected… in filter_attrib_sample()
946 …sprintf(g_logbuf, "Error: Line %" PRIuPTR " of --qual-scores file is pathologically long.\n", line… in filter_qual_scores()
999 …sprintf(g_logbuf, "--qual-scores: %" PRIuPTR " variant%s remaining.\n", marker_ct, (marker_ct == 1… in filter_qual_scores()
1010 …sprintf(g_logbuf, "Error: Line %" PRIuPTR " of --qual-scores file has fewer tokens than expected.\… in filter_qual_scores()
1492 …sprintf(g_logbuf, "Error: Line %" PRIuPTR " of --filter file is pathologically long.\n", line_idx); in filter_samples_file()
[all …]
H A Dplink_common.h936 extern char g_logbuf[];
986 #define LOGPRINTF(...) sprintf(g_logbuf, __VA_ARGS__); logprintb();
988 #define LOGERRPRINTF(...) sprintf(g_logbuf, __VA_ARGS__); logerrprintb();
996 #define LOGPREPRINTFWW(...) sprintf(g_logbuf, __VA_ARGS__); wordwrapb(0);
998 #define LOGPRINTFWW(...) sprintf(g_logbuf, __VA_ARGS__); wordwrapb(0); logprintb();
1000 #define LOGERRPRINTFWW(...) sprintf(g_logbuf, __VA_ARGS__); wordwrapb(0); logerrprintb();
1003 #define LOGPRINTFWW5(...) sprintf(g_logbuf, __VA_ARGS__); wordwrapb(5); logprintb();
1006 #define UNSTABLE(val) sptr = strcpya(&(g_logbuf[9]), val); goto main_unstable_disabled
H A Dplink_rserve.c114 sprintf(g_logbuf, "Error: Line %" PRIuPTR " of --R file is pathologically long.\n", line_idx); in rserve_call()
/dports/biology/plink/plink-ng-79b2df8c/2.0/
H A Dplink2.cc1052 reterr = PgrValidate(&simple_pgr, genovec_buf, g_logbuf); in Plink2Core()
3042 snprintf(g_logbuf, kLogbufSize, "Error: Invalid --%s mode '%s'.\n", flagname_p, mode_str); in ParseFreqSelector()
3813 snprintf(g_logbuf, kLogbufSize, "Error: Invalid --aperm beta '%s'.\n", cur_modif);
3958 snprintf(g_logbuf, kLogbufSize, "Error: Invalid --bcf argument '%s'.\n", cur_modif);
5329 snprintf(g_logbuf, kLogbufSize, "Error: Invalid --glm argument '%s'.\n", cur_modif);
5415 snprintf(g_logbuf, kLogbufSize, "Error: Invalid --gen argument '%s'.\n", cur_modif);
6195 snprintf(g_logbuf, kLogbufSize, "Error: Invalid --ld argument '%s'.\n", cur_modif);
6275 char* write_iter = strcpya_k(g_logbuf, "Error: Invalid --make-bed argument '");
6964 snprintf(g_logbuf, kLogbufSize, "Error: Invalid --mac argument '%s'.\n", cur_modif);
9783 snprintf(g_logbuf, kLogbufSize, "Random number seed: %u\n", seed);
[all …]
H A Dplink2_set.cc56 …snprintf(g_logbuf, kLogbufSize, "Error: Line %" PRIuPTR " of %s has fewer tokens than expected.\n"… in LoadIntervalBed()
70 …snprintf(g_logbuf, kLogbufSize, "Error: Invalid chromosome code on line %" PRIuPTR " of %s.\n", li… in LoadIntervalBed()
197 …snprintf(g_logbuf, kLogbufSize, "Error: Line %" PRIuPTR " of %s has fewer tokens than expected.\n"… in LoadIntervalBed()
207 …snprintf(g_logbuf, kLogbufSize, "Error: Invalid chromosome code on line %" PRIuPTR " of %s.\n", li… in LoadIntervalBed()
230 …snprintf(g_logbuf, kLogbufSize, "Error: Invalid range start position on line %" PRIuPTR " of %s.\n… in LoadIntervalBed()
237 …snprintf(g_logbuf, kLogbufSize, "Error: Invalid range end position on line %" PRIuPTR " of %s.\n",… in LoadIntervalBed()
241 …snprintf(g_logbuf, kLogbufSize, "Error: Range end position smaller than range start on line %" PRI… in LoadIntervalBed()
H A Dplink2_fasta.cc32 char* write_iter = strcpya_k(g_logbuf, "Error: Contig '");
39 char* write_iter = strcpya_k(g_logbuf, "Warning: Contig '");
118 …char* write_iter = strcpya_k(g_logbuf, "Error: --ref-from-fa wants to change reference allele assi…
137 char* write_iter = strcpya_k(g_logbuf, "Error: Reference allele at ");
164 char* write_iter = strcpya_k(g_logbuf, "Error: Contig '"); in VNormalizeContig()
224 char* write_iter = strcpya_k(g_logbuf, "Error: Variant at "); in VNormalizeContig()
282 char* write_iter = strcpya_k(g_logbuf, "Error: Variant at "); in VNormalizeContig()
339 char* write_iter = strcpya_k(g_logbuf, "Error: Variant at "); in VNormalizeContig()
557 …snprintf(g_logbuf, kLogbufSize, "Error: Unexpected character at beginning of line %" PRIuPTR " of …
590 …snprintf(g_logbuf, kLogbufSize, "Error: Duplicate contig name '%s' in --fa file.\n", chr_name_star…
[all …]
H A Dplink2_psam.cc173 char* write_iter = strcpya_k(g_logbuf, "Error: Duplicate column header '"); in LoadPsam()
201 … snprintf(g_logbuf, kLogbufSize, "Error: --pheno-name range is inconsistent with %s.\n", psamname); in LoadPsam()
234 …snprintf(g_logbuf, kLogbufSize, "Error: No IID column on line %" PRIuPTR " of %s.\n", line_idx, ps… in LoadPsam()
238 … snprintf(g_logbuf, kLogbufSize, "Error: --pheno-name range is inconsistent with %s.\n", psamname); in LoadPsam()
456 …snprintf(g_logbuf, kLogbufSize, "Error: Invalid IID '0' on line %" PRIuPTR " of %s.\n", line_idx, … in LoadPsam()
909 …snprintf(g_logbuf, kLogbufSize, "Error: \"--%s iid-only\" file has a FID column.\n", (affection_01… in LoadPhenos()
915 …snprintf(g_logbuf, kLogbufSize, "Error: Second column header in %s must be 'IID'.\n", pheno_fname); in LoadPhenos()
996 char* write_iter = strcpya_k(g_logbuf, "Error: '"); in LoadPhenos()
1099 …snprintf(g_logbuf, kLogbufSize, "Error: Duplicate phenotype/covariate ID '%s'.\n", duplicate_pheno… in LoadPhenos()
1173 snprintf(g_logbuf, kLogbufSize, "Error: Duplicate sample ID in %s.\n", pheno_fname); in LoadPhenos()
[all …]
H A Dplink2_filter.cc53 snprintf(g_logbuf, kLogbufSize, "Error: --from variant '%s' not found.\n", varid_from); in FromToFlag()
59 …snprintf(g_logbuf, kLogbufSize, "Error: --from variant ID '%s' appears multiple times.\n", varid_f… in FromToFlag()
69 snprintf(g_logbuf, kLogbufSize, "Error: --to variant '%s' not found.\n", varid_to); in FromToFlag()
73 …snprintf(g_logbuf, kLogbufSize, "Error: --to variant ID '%s' appears multiple times.\n", varid_to); in FromToFlag()
2021 … snprintf(g_logbuf, kLogbufSize, "Error: '%s' is not a categorical phenotype.\n", cat_phenoname); in KeepRemoveCats()
2038 … snprintf(g_logbuf, kLogbufSize, "Error: '%s' is not a categorical covariate.\n", cat_phenoname); in KeepRemoveCats()
4100 …snprintf(g_logbuf, kLogbufSize, "Error: Fewer lines than expected in %s.\n", allele_flag_info->fna…
4215 char* write_iter = strcpya_k(g_logbuf, "Warning: ");
4228 logputs_silent(g_logbuf);
4241 char* write_iter = strcpya_k(g_logbuf, "Warning: ");
[all …]
H A Dplink2_adjust.cc586 snprintf(g_logbuf, kLogbufSize, "Error: %s is empty.\n", in_fname); in AdjustFile()
657 …snprintf(g_logbuf, kLogbufSize, "Error: TEST column present in %s, but no test= parameter was prov… in AdjustFile()
661 snprintf(g_logbuf, kLogbufSize, "Error: No chromosome column in %s.\n", in_fname); in AdjustFile()
665 snprintf(g_logbuf, kLogbufSize, "Error: No bp coordinate column in %s.\n", in_fname); in AdjustFile()
669 snprintf(g_logbuf, kLogbufSize, "Error: No REF column in %s.\n", in_fname); in AdjustFile()
673 snprintf(g_logbuf, kLogbufSize, "Error: No ALT column in %s.\n", in_fname); in AdjustFile()
677 … snprintf(g_logbuf, kLogbufSize, "Warning: No A1 column in %s. Omitting from output.\n", in_fname); in AdjustFile()
812 …snprintf(g_logbuf, kLogbufSize, "Error: Invalid bp coordinate on line %" PRIuPTR " of %s.\n", line… in AdjustFile()
903 …snprintf(g_logbuf, kLogbufSize, "Error: Line %" PRIuPTR " of %s has fewer tokens than expected.\n"… in AdjustFile()
H A Dplink2_pvar.cc65 …snprintf(g_logbuf, kLogbufSize, "Error: Header line %" PRIuPTR " of %s has an invalid ##chrSet hap… in ReadChrsetHeaderLine()
83 …snprintf(g_logbuf, kLogbufSize, "Error: Header line %" PRIuPTR " of %s does not have expected ##ch… in ReadChrsetHeaderLine()
95 …snprintf(g_logbuf, kLogbufSize, "Error: Header line %" PRIuPTR " of %s does not have expected ##ch… in ReadChrsetHeaderLine()
860 … snprintf(g_logbuf, kLogbufSize, "Error: Duplicate INFO:PR header line in %s.\n", pvarname); in LoadPvar()
873 … snprintf(g_logbuf, kLogbufSize, "Error: Multiple ##chrSet header lines in %s.\n", pvarname); in LoadPvar()
1008 char* write_iter = strcpya_k(g_logbuf, "Error: Duplicate column header '"); in LoadPvar()
1373 …snprintf(g_logbuf, kLogbufSize, "Error: %s has a split chromosome. Use --make-pgen + --sort-vars t… in LoadPvar()
1492 …snprintf(g_logbuf, kLogbufSize, "Error: Invalid bp coordinate on line %" PRIuPTR " of %s.\n", line… in LoadPvar()
1506 …snprintf(g_logbuf, kLogbufSize, "Error: Invalid QUAL value on line %" PRIuPTR " of %s.\n", line_id… in LoadPvar()
1717 …snprintf(g_logbuf, kLogbufSize, "Error: Invalid centimorgan position on line %" PRIuPTR " of %s.\n… in LoadPvar()
[all …]
H A Dplink2_import.cc345 snprintf(g_logbuf, kLogbufSize, "Error: No '%c' in sample ID.\n", id_delim); in ImportSampleId()
454 snprintf(g_logbuf, kLogbufSize, "Error: No '%c' in sample ID.\n", id_delim); in ImportIidFromSampleId()
537 snprintf(g_logbuf, kLogbufSize, "Error: No '%c' in sample ID.\n", id_delim); in VcfSampleLine()
3772 char* write_iter = strcpya_k(g_logbuf, "--vcf: "); in VcfToPgen()
8837 char* write_iter = strcpya_k(g_logbuf, "--bcf: "); in BcfToPgen()
10053 char* write_iter = strcpya_k(g_logbuf, "--data/--gen: "); in OxGenToPgen()
13422 char* write_iter = strcpya_k(g_logbuf, "--bgen: "); in OxBgenToPgen()
13665 snprintf(g_logbuf, kLogbufSize, "Error: %s is empty.\n", hapsname); in OxHapslegendToPgen()
13737 snprintf(g_logbuf, kLogbufSize, "Error: %s is empty.\n", legendname); in OxHapslegendToPgen()
14124 char* write_iter = strcpya_k(g_logbuf, "--haps"); in OxHapslegendToPgen()
[all …]
H A Dplink2_cmdline.cc55 char g_logbuf[kLogbufSize]; variable
102 logputs_silent(g_logbuf); in logputsb()
103 fputs(g_logbuf, stdout); in logputsb()
107 logputs_silent(g_logbuf); in logerrputsb()
109 fputs(g_logbuf, stderr); in logerrputsb()
502 fputs(g_logbuf, stdout); in CleanupLogfile()
508 logputs_silent(g_logbuf); in CleanupLogfile()
3532 fputs(g_logbuf, stderr); in CmdlineParsePhase1()
3642 fputs(g_logbuf, stderr); in CmdlineParsePhase1()
3727 fputs(g_logbuf, stderr); in CmdlineParsePhase1()
[all …]
H A Dplink2_misc.cc72 snprintf(g_logbuf, kLogbufSize, "Error: Fewer lines than expected in %s.\n", params->fname); in UpdateVarBps()
158 …snprintf(g_logbuf, kLogbufSize, "--update-map: %u value%s updated.\n", hit_ct, (hit_ct == 1)? "" :… in UpdateVarBps()
245 snprintf(g_logbuf, kLogbufSize, "Error: Fewer lines than expected in %s.\n", params->fname); in UpdateVarNames()
344 …snprintf(g_logbuf, kLogbufSize, "--update-name: %u value%s updated.\n", hit_ct, (hit_ct == 1)? "" … in UpdateVarNames()
482 … snprintf(g_logbuf, kLogbufSize, "Error: Duplicate allele code in variant '%s'.\n", varid); in UpdateVarAlleles()
488 … snprintf(g_logbuf, kLogbufSize, "Error: Duplicate allele code in variant '%s'.\n", varid); in UpdateVarAlleles()
567 … snprintf(g_logbuf, kLogbufSize, "Error: Duplicate allele code in variant '%s'.\n", varid); in UpdateVarAlleles()
717 char* write_iter = strcpya_k(g_logbuf, "Error: Duplicate column header '"); in RecoverVarIds()
1399 … snprintf(g_logbuf, kLogbufSize, "--within: %u non-null categories present.\n", nonnull_cat_ct); in Plink1ClusterImport()
1995 …snprintf(g_logbuf, kLogbufSize, "--update-ids: %u sample%s updated.\n", hit_ct, (hit_ct == 1)? "" … in UpdateSampleIds()
[all …]
H A Dplink2_ld.cc3181 char* write_poststop = &(g_logbuf[80]); in LdConsole()
3201 write_iter = strcpya_k(g_logbuf, " MAJOR = "); in LdConsole()
3218 write_iter = strcpya_k(g_logbuf, " MINOR = "); in LdConsole()
3224 char* write_ellipsis_start = &(g_logbuf[76]); in LdConsole()
3246 write_iter = strcpya_k(g_logbuf, " (REF = "); in LdConsole()
3260 char* write_iter = u32toa(valid_obs_ct, g_logbuf); in LdConsole()
3293 assert(write_iter - g_logbuf < 78); in LdConsole()
3421 assert(write_iter - g_logbuf < 78); in LdConsole()
3430 write_iter = strcpya_k(g_logbuf, " r^2 = "); in LdConsole()
3440 assert(write_iter - g_logbuf < 79); in LdConsole()
[all …]
H A Dplink2_cmdline.h147 extern char g_logbuf[];
171 vsnprintf(g_logbuf, kLogbufSize, fmt, args); in logprintf()
178 vsnprintf(g_logbuf, kLogbufSize, fmt, args); in logerrprintf()
185 WordWrap(suffix_len, g_logbuf); in WordWrapB()
191 vsnprintf(g_logbuf, kLogbufSize, fmt, args); in logpreprintfww()
198 vsnprintf(g_logbuf, kLogbufSize, fmt, args); in logprintfww()
206 vsnprintf(g_logbuf, kLogbufSize, fmt, args); in logerrprintfww()
215 vsnprintf(g_logbuf, kLogbufSize, fmt, args); in logprintfww5()
224 vsnprintf(g_logbuf, kLogbufSize, fmt, args); in DebugPrintf()
233 vsnprintf(g_logbuf, kLogbufSize, fmt, args); in DPrintf()
H A Dplink2_matrix_calc.cc356 … snprintf(g_logbuf, kLogbufSize, "Error: Duplicate ID '%s' in %s .\n", idbuf, king_cutoff_fprefix); in KingCutoffBatch()
2066 char* write_iter = strcpya_k(g_logbuf, "Results written to "); in CalcKing()
2085 char* write_iter = strcpya_k(g_logbuf, "Results written to "); in CalcKing()
2475 …snprintf(g_logbuf, kLogbufSize, "Error: Identical sample IDs on line %" PRIuPTR " of --king-table-… in KingTableSubsetLoad()
4330 log_write_iter = strcpya_k(g_logbuf, "--make-rel: GRM "); in CalcGrm()
4417 log_write_iter = strcpya_k(g_logbuf, "--make-grm-bin: GRM "); in CalcGrm()
4481 log_write_iter = strcpya_k(g_logbuf, "--make-grm-list: GRM "); in CalcGrm()
5821 …snprintf(g_logbuf, kLogbufSize, "Error: Name too long on line %" PRIuPTR " of --q-score-range rang… in ScoreReport()
6300 char* errwrite_iter = strcpya_k(g_logbuf, "Error: "); in ScoreReport()
6543 …snprintf(g_logbuf, kLogbufSize, "Error: Line %" PRIuPTR " of --score file has an invalid coefficie… in ScoreReport()
[all …]
H A Dplink2_export.cc100 …snprintf(g_logbuf, kLogbufSize, "Error: --export-allele variant ID '%s' appears multiple times in …
174 …snprintf(g_logbuf, kLogbufSize, "--export-allele: %u variant%s updated.\n", hit_ct, (hit_ct == 1)?…
3870 char* write_iter = strcpya_k(g_logbuf, "Error: Contig name '"); in ValidVcfContigName()
6056 char* write_iter = strcpya_k(g_logbuf, "Error: Multiple "); in AddToFifHtable()
7385 char* err_write_iter = strcpya_k(g_logbuf, "Warning: Unexpected INFO:END value for variant"); in MakeRlenWarningStr()
7658 … snprintf(g_logbuf, kLogbufSize, "Error: Invalid INFO:%s header line in .pvar file.\n", id_start);
8324 …snprintf(g_logbuf, kLogbufSize, "Error: --export bcf: Multiallelic variant '%s' has a missing ALT …
8409 …snprintf(g_logbuf, kLogbufSize, "Error: --export bcf: Variant '%s' has an INFO key with no corresp…
8413 …snprintf(g_logbuf, kLogbufSize, "Error: --export bcf: Variant '%s' has multiple INFO:%s entries.\n…
8516 logputs_silent(g_logbuf);
[all …]
H A Dplink2_common.cc2565 …snprintf(g_logbuf, kLogbufSize, "Error: Invalid --%s parameter '%s'.\n", flagname_p, argvk[cur_par… in ParseChrRanges()
2580 …snprintf(g_logbuf, kLogbufSize, "Error: Invalid --%s chromosome code '%s'.\n", flagname_p, token_b… in ParseChrRanges()
2598 …snprintf(g_logbuf, kLogbufSize, "Error: Invalid --%s chromosome code '%s'.\n", flagname_p, range_e… in ParseChrRanges()
2605 …snprintf(g_logbuf, kLogbufSize, "Error: --%s chromosome code '%s' cannot be the end of a range.\n"… in ParseChrRanges()
2609 …snprintf(g_logbuf, kLogbufSize, "Error: --%s chromosome code '%s' is not greater than '%s'.\n", fl… in ParseChrRanges()

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