Searched refs:g_scoreGapAmbig (Results 1 – 7 of 7) sorted by relevance
9 SCORE &g_scoreGapAmbig = ctx->params.g_scoreGapAmbig; in GapScoreMM() local13 g_scoreGapAmbig*(PPA.m_GL*PPB.m_GG + PPA.m_GG*PPB.m_GL); in GapScoreMM()21 SCORE &g_scoreGapAmbig = ctx->params.g_scoreGapAmbig; in GapScoreMD() local25 g_scoreGapAmbig*(PPA.m_GL*PPB.m_LG + PPA.m_GL*PPB.m_GG); in GapScoreMD()33 SCORE &g_scoreGapAmbig = ctx->params.g_scoreGapAmbig; in GapScoreMI() local45 SCORE &g_scoreGapAmbig = ctx->params.g_scoreGapAmbig; in GapScoreDM() local56 SCORE &g_scoreGapAmbig = ctx->params.g_scoreGapAmbig; in GapScoreDD() local66 SCORE &g_scoreGapAmbig = ctx->params.g_scoreGapAmbig; in GapScoreDI() local77 SCORE &g_scoreGapAmbig = ctx->params.g_scoreGapAmbig; in GapScoreIM() local88 SCORE &g_scoreGapAmbig = ctx->params.g_scoreGapAmbig; in GapScoreID() local[all …]
53 SCORE g_scoreGapAmbig; member
518 ctx->params.g_scoreGapAmbig = ctx->params.g_scoreGapOpen*ctx->params.g_scoreAmbigFactor; in SetParams()
79 params.g_scoreGapAmbig = 0; in MuscleContext()
8 g_scoreGapAmbig*(PPA.m_GL*PPB.m_GG + PPA.m_GG*PPB.m_GL); in GapScoreMM()16 g_scoreGapAmbig*(PPA.m_GL*PPB.m_LG + PPA.m_GL*PPB.m_GG); in GapScoreMD()24 g_scoreGapAmbig*(PPA.m_LG*PPB.m_GL + PPA.m_GG*PPB.m_GL); in GapScoreMI()32 g_scoreGapAmbig*(PPA.m_GL*PPB.m_LG + PPA.m_GL*PPB.m_GG + PPA.m_GG*PPB.m_LL + PPA.m_GG*PPB.m_GL); in GapScoreDM()39 g_scoreGapAmbig*(PPA.m_GL*PPB.m_LL + PPA.m_GL*PPB.m_LG + PPA.m_GL*PPB.m_GL + PPA.m_GL*PPB.m_GG); in GapScoreDD()46 g_scoreGapAmbig*(PPA.m_LG*PPB.m_LL + PPA.m_LG*PPB.m_GL + PPA.m_GG*PPB.m_LL + PPA.m_GG*PPB.m_GL); in GapScoreDI()54 g_scoreGapAmbig*(PPA.m_LL*PPB.m_GG + PPA.m_LG*PPB.m_GL + PPA.m_GL*PPB.m_GG + PPA.m_GG*PPB.m_GL); in GapScoreIM()61 g_scoreGapAmbig*(PPA.m_LL*PPB.m_LG + PPA.m_LL*PPB.m_GG + PPA.m_GL*PPB.m_LG + PPA.m_GL*PPB.m_GG); in GapScoreID()68 g_scoreGapAmbig*(PPA.m_LL*PPB.m_GL + PPA.m_LG*PPB.m_GL + PPA.m_GL*PPB.m_GL + PPA.m_GG*PPB.m_GL); in GapScoreII()
12 SCORE g_scoreGapAmbig = 0; variable169 Log("Gap ambig penalty %g\n", g_scoreGapAmbig); in ListParams()622 g_scoreGapAmbig = g_scoreGapOpen*g_scoreAmbigFactor; in SetParams()
32 extern SCORE g_scoreGapAmbig;