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Searched refs:g_textbuf (Results 1 – 25 of 32) sorted by relevance

12

/dports/biology/plink/plink-ng-79b2df8c/1.9/
H A Dplink_rserve.c237 if (fwrite_checked(g_textbuf, bufptr - g_textbuf, outfile)) { in rserve_call()
243 fwrite(g_textbuf, 1, (uintptr_t)(bufptr - g_textbuf), outfile); in rserve_call()
247 if (fwrite_checked(g_textbuf, bufptr - g_textbuf, outfile)) { in rserve_call()
256 fwrite(g_textbuf, 1, (uintptr_t)(bufptr - g_textbuf), outfile); in rserve_call()
275 if (fwrite_checked(g_textbuf, bufptr - g_textbuf, outfile)) { in rserve_call()
360 if (fwrite_checked(g_textbuf, bufptr - g_textbuf, outfile)) { in rserve_call()
383 if (fwrite_checked(g_textbuf, bufptr - g_textbuf, outfile)) { in rserve_call()
402 if (fwrite_checked(g_textbuf, bufptr - g_textbuf, outfile)) { in rserve_call()
413 if (fwrite_checked(g_textbuf, bufptr - g_textbuf, outfile)) { in rserve_call()
434 if (fwrite_checked(g_textbuf, bufptr - g_textbuf, outfile)) { in rserve_call()
[all …]
H A Dplink_cluster.c675 if (fwrite_checked(g_textbuf, bufptr - g_textbuf, outfile)) { in write_clusters()
2770 if (fwrite_checked(g_textbuf, wptr - g_textbuf, outfile)) { in write_cluster_solution()
2786 if (fwrite_checked(g_textbuf, wptr - g_textbuf, outfile)) { in write_cluster_solution()
3116 g_textbuf[22] = ' '; in mds_plot()
3119 uii = wptr - g_textbuf; in mds_plot()
3142 if (fwrite_checked(g_textbuf, wptr - g_textbuf, outfile)) { in mds_plot()
3154 wptr2 = &(g_textbuf[11]); in mds_plot()
3167 wptr2 = &(g_textbuf[11]); in mds_plot()
3425 g_textbuf[22] = ' '; in mds_plot_eigendecomp()
3428 uii = wptr - g_textbuf; in mds_plot_eigendecomp()
[all …]
H A Dplink_cnv.c129 if (!g_textbuf[MAXLINELEN - 1]) { in cnv_intersect_load()
345 if (!fgets(g_textbuf, MAXLINELEN, cnvfile)) { in cnv_first_nonheader_line()
348 if (!g_textbuf[MAXLINELEN - 1]) { in cnv_first_nonheader_line()
353 bufptr = skip_initial_spaces(g_textbuf); in cnv_first_nonheader_line()
357 if (!fgets(g_textbuf, MAXLINELEN, cnvfile)) { in cnv_first_nonheader_line()
474 return fwrite_checked(g_textbuf, wptr2 - g_textbuf, new_mapfile); in cnv_make_map_write()
523 if (!g_textbuf[MAXLINELEN - 1]) { in cnv_make_map()
743 if (!g_textbuf[MAXLINELEN - 1]) { in validate_cnv_map()
762 if (!g_textbuf[MAXLINELEN - 1]) { in validate_cnv_map()
876 if (!fgets(g_textbuf, MAXLINELEN, mapfile)) { in load_cnv_map()
[all …]
H A Dplink_homozyg.c532 if (fwrite_checked(g_textbuf, wptr - g_textbuf, outfile)) { in write_main_roh_reports()
1929 if (fwrite_checked(g_textbuf, wptr - g_textbuf, outfile)) { in roh_pool()
1936 fwrite(g_textbuf, 1, wptr - g_textbuf, outfile); in roh_pool()
1941 fwrite(g_textbuf, 1, wptr - g_textbuf, outfile); in roh_pool()
1959 fwrite(g_textbuf, 1, wptr - g_textbuf, outfile); in roh_pool()
2019 if (fwrite_checked(g_textbuf, wptr - g_textbuf, outfile)) { in roh_pool()
2043 fwrite(g_textbuf, 1, wptr - g_textbuf, outfile); in roh_pool()
2050 if (fwrite_checked(g_textbuf, wptr - g_textbuf, outfile)) { in roh_pool()
2056 fwrite(g_textbuf, 1, wptr - g_textbuf, outfile); in roh_pool()
2332 if (fwrite_checked(g_textbuf, wptr - g_textbuf, outfile)) { in roh_pool()
[all …]
H A Dplink_set.c298 g_textbuf[MAXLINELEN - 1] = ' '; in load_range_list()
303 if (!g_textbuf[MAXLINELEN - 1]) { in load_range_list()
1735 g_textbuf[0] = '\t'; in write_set()
1754 fwrite(g_textbuf, 1, bufptr - g_textbuf, outfile); in write_set()
3179 if (fwrite_checked(g_textbuf, bufptr2 - g_textbuf, outfile)) { in annotate()
3637 strcpy(g_textbuf, " -- "); in gene_report()
3641 bufptr = &(g_textbuf[4]); in gene_report()
3647 if (fwrite_checked(g_textbuf, bufptr - g_textbuf, outfile)) { in gene_report()
3662 fwrite(g_textbuf, 1, bufptr - g_textbuf, outfile); in gene_report()
3667 fwrite(g_textbuf, 1, bufptr - g_textbuf, outfile); in gene_report()
[all …]
H A Dplink_data.c1860 fwrite(g_textbuf, 1, wptr - g_textbuf, outfile); in write_covars()
1950 fwrite(g_textbuf, 1, wptr - g_textbuf, outfile); in write_covars()
2030 fwrite(g_textbuf, 1, wptr - g_textbuf, outfile); in write_covars()
2064 fwrite(g_textbuf, 1, wptr - g_textbuf, outfile); in write_covars()
2081 fwrite(g_textbuf, 1, wptr - g_textbuf, outfile); in write_covars()
4755 fwrite(g_textbuf, 1, bufptr - g_textbuf, outfile_bim); in oxford_to_bed()
6887 fwrite(g_textbuf, 1, cptr - g_textbuf, outfile); in lgen_to_bed()
7329 cptr3 = memcpya(cptr3, g_textbuf, cptr2 - g_textbuf); in transposed_to_bed()
7384 cptr3 = memcpya(cptr3, g_textbuf, cptr2 - g_textbuf); in transposed_to_bed()
13265 fwrite(g_textbuf, 1, wbufptr - g_textbuf, outfile2); in recode()
[all …]
H A Dplink_ld.c7674 fwrite(g_textbuf, 1, bufptr - g_textbuf, outfile); in twolocus_write_table()
7703 fwrite(g_textbuf, 1, bufptr - g_textbuf, outfile); in twolocus_write_table()
7714 fwrite(g_textbuf, 1, bufptr - g_textbuf, outfile); in twolocus_write_table()
7720 fwrite(g_textbuf, 1, bufptr - g_textbuf, outfile); in twolocus_write_table()
7731 fwrite(g_textbuf, 1, bufptr - g_textbuf, outfile); in twolocus_write_table()
7737 fwrite(g_textbuf, 1, bufptr - g_textbuf, outfile); in twolocus_write_table()
7748 fwrite(g_textbuf, 1, bufptr - g_textbuf, outfile); in twolocus_write_table()
7757 fwrite(g_textbuf, 1, bufptr - g_textbuf, outfile); in twolocus_write_table()
7767 fwrite(g_textbuf, 1, bufptr - g_textbuf, outfile); in twolocus_write_table()
7771 fwrite(g_textbuf, 1, bufptr - g_textbuf, outfile); in twolocus_write_table()
[all …]
H A Dplink_assoc.c484 if (fwrite_checked(g_textbuf, bufptr - g_textbuf, outfile)) { in multcomp()
547 if (fwrite_checked(g_textbuf, bufptr - g_textbuf, outfile)) { in multcomp()
7732 if (fwrite_checked(g_textbuf, wptr - g_textbuf, outfile)) { in model_assoc()
8677 if (fwrite_checked(g_textbuf, wptr - g_textbuf, outfile)) { in qassoc()
9067 if (fwrite_checked(g_textbuf, wptr - g_textbuf, outfile)) { in qassoc()
9554 if (fwrite_checked(g_textbuf, wptr - g_textbuf, outfile)) { in gxe_assoc()
10203 if (fwrite_checked(g_textbuf, wptr - g_textbuf, outfile)) { in testmiss()
10721 if (fwrite_checked(g_textbuf, wptr - g_textbuf, outfile)) { in testmiss()
11198 if (fwrite_checked(g_textbuf, wptr - g_textbuf, outfile)) { in cmh_assoc()
11204 if (fwrite_checked(g_textbuf, wptr - g_textbuf, outfile)) { in cmh_assoc()
[all …]
H A Dplink_lasso.c593 char* wptr = g_textbuf; in lasso_lambda()
599 if (fwrite_checked(g_textbuf, wptr - g_textbuf, outfile)) { in lasso_lambda()
602 wptr = g_textbuf; in lasso_lambda()
606 if (fwrite_checked(g_textbuf, wptr - g_textbuf, outfile)) { in lasso_lambda()
1193 g_textbuf[MAXLINELEN] = '\t'; in lasso()
1208 wptr = memcpya(g_textbuf, "COV\t", 4); in lasso()
1212 if (fwrite_checked(g_textbuf, wptr - g_textbuf, outfile)) { in lasso()
1232 wptr2 = dtoa_gx(dxx, '\n', &(g_textbuf[MAXLINELEN + 1])); in lasso()
1237 wptr2 = memcpyl3a(&(g_textbuf[MAXLINELEN + 1]), "NA\n"); in lasso()
1239 if (fwrite_checked(g_textbuf, wptr - g_textbuf, outfile)) { in lasso()
[all …]
H A Dplink_filter.c96 g_textbuf[MAXLINELEN - 1] = ' '; in keep_or_remove()
102 if (!g_textbuf[MAXLINELEN - 1]) { in keep_or_remove()
325 char* midbuf = &(g_textbuf[MAXLINELEN]); in extract_exclude_flag_norange()
1221 g_textbuf[MAXLINELEN - 1] = ' '; in load_oblig_missing()
1228 if (!g_textbuf[MAXLINELEN - 1]) { in load_oblig_missing()
1348 if (!g_textbuf[MAXLINELEN - 1]) { in load_oblig_missing()
1488 g_textbuf[MAXLINELEN - 1] = ' '; in filter_samples_file()
1491 if (!g_textbuf[MAXLINELEN - 1]) { in filter_samples_file()
2650 cptr = width_force(4, g_textbuf, chrom_name_write(chrom_info_ptr, chrom_idx, g_textbuf)); in write_missingness_reports()
2692 pzwritep = memcpya(pzwritep, g_textbuf, cptr2 - g_textbuf); in write_missingness_reports()
[all …]
H A Dplink_dosage.c387 g_textbuf[MAXLINELEN - 1] = ' '; in dosage_load_score_files()
388 while (fgets(g_textbuf, MAXLINELEN, infile)) { in dosage_load_score_files()
390 if (!g_textbuf[MAXLINELEN - 1]) { in dosage_load_score_files()
394 bufptr = skip_initial_spaces(g_textbuf); in dosage_load_score_files()
430 bufptr = skip_initial_spaces(g_textbuf); in dosage_load_score_files()
1255 if (!g_textbuf[MAXLINELEN - 1]) { in plink1_dosage()
1259 bufptr = skip_initial_spaces(g_textbuf); in plink1_dosage()
1331 bufptr = skip_initial_spaces(g_textbuf); in plink1_dosage()
1549 pzwritep = memcpya(pzwritep, g_textbuf, bufptr - g_textbuf); in plink1_dosage()
1608 if (!g_textbuf[MAXLINELEN - 1]) { in plink1_dosage()
[all …]
H A Dplink_glm.c5565 if (fwrite_checked(g_textbuf, wptr - g_textbuf, outfile)) { in glm_linear_assoc()
7001 if (fwrite_checked(g_textbuf, wptr - g_textbuf, outfile)) { in glm_logistic_assoc()
7667 if (fwrite_checked(g_textbuf, wptr - g_textbuf, outfile)) { in glm_linear_nosnp()
7809 if (fwrite_checked(g_textbuf, wptr - g_textbuf, outfile)) { in glm_linear_nosnp()
7827 if (fwrite_checked(g_textbuf, wptr - g_textbuf, outfile)) { in glm_linear_nosnp()
7863 if (fwrite_checked(g_textbuf, wptr - g_textbuf, outfile)) { in glm_linear_nosnp()
7869 if (fwrite_checked(g_textbuf, wptr - g_textbuf, outfile)) { in glm_linear_nosnp()
8460 if (fwrite_checked(g_textbuf, wptr - g_textbuf, outfile)) { in glm_logistic_nosnp()
8593 if (fwrite_checked(g_textbuf, wptr - g_textbuf, outfile)) { in glm_logistic_nosnp()
8611 if (fwrite_checked(g_textbuf, wptr - g_textbuf, outfile)) { in glm_logistic_nosnp()
[all …]
H A Dplink_misc.c3246 if (fwrite_checked(g_textbuf, wptr - g_textbuf, outfile)) { in sexcheck()
3598 if (fwrite_checked(g_textbuf, wptr - g_textbuf, outfile)) { in list_duplicate_vars()
4155 if (fwrite_checked(g_textbuf, wptr - g_textbuf, outfile)) { in fst_report()
5831 if (fwrite_checked(g_textbuf, wptr - g_textbuf, outfile)) { in meta_analysis()
5952 g_textbuf[0] = ' '; in meta_analysis()
5953 g_textbuf[1] = 'F'; in meta_analysis()
5956 if (fwrite_checked(g_textbuf, wptr - g_textbuf, outfile)) { in meta_analysis()
6249 wptr = g_textbuf; in meta_analysis()
6262 if (fwrite_checked(g_textbuf, wptr - g_textbuf, outfile)) { in meta_analysis()
6302 g_textbuf[0] = ' '; in meta_analysis()
[all …]
H A Dplink_calc.c7196 if (fwrite_checked(g_textbuf, wptr - g_textbuf, outfile)) { in calc_pca()
7307 if (fwrite_checked(g_textbuf, wptr - g_textbuf, outfile)) { in calc_pca()
7376 if (fwrite_checked(g_textbuf, wptr - g_textbuf, outfile)) { in calc_pca()
7396 if (fwrite_checked(g_textbuf, wptr - g_textbuf, outfile)) { in calc_pca()
7418 if (fwrite_checked(g_textbuf, wptr - g_textbuf, outfile)) { in calc_pca()
8680 fwrite(g_textbuf, 1, wptr - g_textbuf, outfile); in calc_cluster_neighbor()
8710 fwrite(g_textbuf, 1, wptr - g_textbuf, outfile); in calc_cluster_neighbor()
8732 fwrite(g_textbuf, 1, wptr - g_textbuf, outfile); in calc_cluster_neighbor()
8763 fwrite(g_textbuf, 1, wptr - g_textbuf, outfile); in calc_cluster_neighbor()
8786 fwrite(g_textbuf, 1, wptr - g_textbuf, outfile); in calc_cluster_neighbor()
[all …]
H A Dplink_family.c907 if (fwrite_checked(g_textbuf, wptr - g_textbuf, outfile)) { in mendel_error_scan()
961 if (fwrite_checked(g_textbuf, wptr - g_textbuf, outfile)) { in mendel_error_scan()
983 if (fwrite_checked(g_textbuf, wptr - g_textbuf, outfile_l)) { in mendel_error_scan()
1114 if (fwrite_checked(g_textbuf, wptr - g_textbuf, outfile)) { in mendel_error_scan()
1145 if (fwrite_checked(g_textbuf, wptr - g_textbuf, outfile)) { in mendel_error_scan()
1161 if (fwrite_checked(g_textbuf, wptr - g_textbuf, outfile)) { in mendel_error_scan()
1171 if (fwrite_checked(g_textbuf, wptr - g_textbuf, outfile)) { in mendel_error_scan()
4912 if (fwrite_checked(g_textbuf, wptr - g_textbuf, outfile)) { in dfam()
5787 if (fwrite_checked(g_textbuf, bufptr - g_textbuf, outfile)) { in qfam()
5817 if (fwrite_checked(g_textbuf, bufptr - g_textbuf, outfile)) { in qfam()
[all …]
H A Dplink_help.c95 strcpy(g_textbuf, cur_params); in help_print()
97 cur_param_start[0] = g_textbuf; in help_print()
98 payload_ptr = strchr(g_textbuf, '\t'); in help_print()
200 memcpyx(g_textbuf, payload_ptr, uii, 0); in help_print()
201 fputs(g_textbuf, stdout); in help_print()
H A Dplink.c482 if (realpath_identical(outname, g_textbuf, &(g_textbuf[FNAMESIZE + 64]))) { in plink()
948 if ((*g_textbuf == '#') || ((uii == 3) && (!memcmp(g_textbuf, "chr", 3)))) { in plink()
2525 g_textbuf[MAXLINELEN - 1] = ' '; in rerun()
2531 if (!g_textbuf[MAXLINELEN - 1]) { in rerun()
2540 if (!g_textbuf[MAXLINELEN - 1]) { in rerun()
2543 if ((g_textbuf[0] >= '0') && (g_textbuf[0] <= '9')) { in rerun()
2562 while (memcmp(g_textbuf, "Options in effect:", 18) || (g_textbuf[18] >= ' ')) { in rerun()
2570 load_ptr = g_textbuf; in rerun()
2641 g_textbuf[loaded_arg_idx++] = 0; in rerun()
3981 logstr(g_textbuf); in main()
[all …]
H A Dplink_common.c27 char g_textbuf[TEXTBUF_SIZE]; variable
780 if (!fgets(g_textbuf, MAXLINELEN, fptr)) { in get_next_noncomment()
784 lptr = skip_initial_spaces(g_textbuf); in get_next_noncomment()
9711 g_textbuf[MAXLINELEN - 1] = ' '; in open_and_size_string_list()
9712 while (fgets(g_textbuf, MAXLINELEN, *infile_ptr)) { in open_and_size_string_list()
9714 if (!g_textbuf[MAXLINELEN - 1]) { in open_and_size_string_list()
9718 bufptr = skip_initial_spaces(g_textbuf); in open_and_size_string_list()
9755 while (fgets(g_textbuf, MAXLINELEN, *infile_ptr)) { in load_string_list()
9756 bufptr = skip_initial_spaces(g_textbuf); in load_string_list()
/dports/biology/plink/plink-ng-79b2df8c/2.0/
H A Dplink2_cmdline.cc39 char g_textbuf[kTextbufSize]; variable
3185 memcpyx(g_textbuf, payload_iter, line_slen, '\0'); in HelpPrint()
3186 fputs(g_textbuf, stdout); in HelpPrint()
3329 char* rerun_fname = rerun_parameter_present? argv[rerun_argv_pos + 1] : g_textbuf; in Rerun()
3341 char* textbuf = g_textbuf; in Rerun()
3871 if (GetComputerName(g_textbuf, &windows_dw)) in CmdlineParsePhase2()
3873 if (gethostname(g_textbuf, kTextbufSize) != -1) in CmdlineParsePhase2()
3877 logputs_silent(g_textbuf); in CmdlineParsePhase2()
3880 if (unlikely(!getcwd(g_textbuf, kPglFnamesize))) { in CmdlineParsePhase2()
3886 logputs_silent(g_textbuf); in CmdlineParsePhase2()
H A Dplink2.cc697 if (unlikely(!realpath(pgenname, g_textbuf))) in Plink2Core()
706 pgen_rename = RealpathIdentical(outname, g_textbuf, &(g_textbuf[kPglFnamesize + 64])); in Plink2Core()
710 pgen_rename = RealpathIdentical(outname, g_textbuf, &(g_textbuf[kPglFnamesize + 64])); in Plink2Core()
715 memcpy(g_textbuf, pgenname, fname_slen + 1); in Plink2Core()
717 if (unlikely(rename(g_textbuf, pgenname))) { in Plink2Core()
722 memcpy(g_textbuf, pvarname, fname_slen + 1); in Plink2Core()
724 if (unlikely(rename(g_textbuf, pvarname))) { in Plink2Core()
730 memcpy(g_textbuf, psamname, fname_slen + 1); in Plink2Core()
732 if (unlikely(rename(g_textbuf, psamname))) { in Plink2Core()
895 pvar_renamed = RealpathIdentical(outname, g_textbuf, &(g_textbuf[kPglFnamesize + 64])); in Plink2Core()
[all …]
H A Dplink2_matrix_calc.cc2705 fname_slen = GetFullPathName(subset_fname, kPglFnamesize, g_textbuf, nullptr); in CalcKingTableSubset()
2708 if (unlikely(!realpath(subset_fname, g_textbuf))) in CalcKingTableSubset()
2714 if (RealpathIdentical(outname, g_textbuf, &(g_textbuf[kPglFnamesize + 64]))) { in CalcKingTableSubset()
2717 memcpy(g_textbuf, subset_fname, fname_slen); in CalcKingTableSubset()
2718 strcpy_k(&(g_textbuf[fname_slen]), "~"); in CalcKingTableSubset()
2719 if (unlikely(rename(subset_fname, g_textbuf))) { in CalcKingTableSubset()
2723 subset_fname = g_textbuf; in CalcKingTableSubset()
4193 write_double_buf = R_CAST(double*, g_textbuf); in CalcGrm()
4381 write_float_buf = R_CAST(float*, g_textbuf); in CalcGrm()
H A Dplink2_fasta.cc489 nlist_write_iter = g_textbuf;
H A Dplink2_common.cc2557 char* token_buf = g_textbuf; in ParseChrRanges()
2979 char* write_iter = g_textbuf; in WriteSampleIdsOverride()
H A Dplink2_cmdline.h131 extern char g_textbuf[];
/dports/lang/nwcc/nwcc_0.8.3/cpp/
H A Dpreprocess.c75 char g_textbuf[2048]; variable
1737 p = g_textbuf;
1747 x_fprintf(out, g_textbuf);

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