Searched refs:g_threadChunks (Results 1 – 10 of 10) sorted by relevance
/dports/biology/star/STAR-2.7.9a/source/ |
H A D | mapThreadsSpawn.cpp | 8 …int threadStatus=pthread_create(&g_threadChunks.threadArray[ithread], NULL, &g_threadChunks.thread… in mapThreadsSpawn() 14 pthread_mutex_lock(&g_threadChunks.mutexLogMain); in mapThreadsSpawn() 16 pthread_mutex_unlock(&g_threadChunks.mutexLogMain); in mapThreadsSpawn() 22 int threadStatus = pthread_join(g_threadChunks.threadArray[ithread], NULL); in mapThreadsSpawn() 28 pthread_mutex_lock(&g_threadChunks.mutexLogMain); in mapThreadsSpawn() 30 pthread_mutex_unlock(&g_threadChunks.mutexLogMain); in mapThreadsSpawn()
|
H A D | ReadAlignChunk_processChunks.cpp | 18 if (P.runThreadN>1) pthread_mutex_lock(&g_threadChunks.mutexInRead); in processChunks() 209 pthread_mutex_lock(&g_threadChunks.mutexLogMain); in processChunks() 216 pthread_mutex_unlock(&g_threadChunks.mutexLogMain); in processChunks() 223 iChunkIn=g_threadChunks.chunkInN;//to keep things consistent in processChunks() 224 g_threadChunks.chunkInN++; in processChunks() 227 iChunkIn=g_threadChunks.chunkInN; in processChunks() 228 g_threadChunks.chunkInN++; in processChunks() 265 pthread_mutex_lock(&g_threadChunks.mutexOutUnmappedFastx); in processChunks() 272 pthread_mutex_unlock(&g_threadChunks.mutexOutUnmappedFastx); in processChunks() 275 if (P.runThreadN>1) pthread_mutex_lock(&g_threadChunks.mutexLogMain); in processChunks() [all …]
|
H A D | BAMoutput.cpp | 58 if (g_threadChunks.threadBool) pthread_mutex_lock(&g_threadChunks.mutexOutSAM); in unsortedOneAlign() 60 if (g_threadChunks.threadBool) pthread_mutex_unlock(&g_threadChunks.mutexOutSAM); in unsortedOneAlign() 71 if (g_threadChunks.threadBool) pthread_mutex_lock(&g_threadChunks.mutexOutSAM); in unsortedFlush() 73 if (g_threadChunks.threadBool) pthread_mutex_unlock(&g_threadChunks.mutexOutSAM); in unsortedFlush() 122 if (P.runThreadN>1) pthread_mutex_lock(&g_threadChunks.mutexBAMsortBins); in coordBins() 146 if (P.runThreadN>1) pthread_mutex_unlock(&g_threadChunks.mutexBAMsortBins); in coordBins()
|
H A D | STAR.cpp | 127 g_threadChunks.threadArray=new pthread_t[P.runThreadN]; in main() 128 pthread_mutex_init(&g_threadChunks.mutexInRead, NULL); in main() 129 pthread_mutex_init(&g_threadChunks.mutexOutSAM, NULL); in main() 130 pthread_mutex_init(&g_threadChunks.mutexOutBAM1, NULL); in main() 131 pthread_mutex_init(&g_threadChunks.mutexOutUnmappedFastx, NULL); in main() 132 pthread_mutex_init(&g_threadChunks.mutexOutFilterBySJout, NULL); in main() 133 pthread_mutex_init(&g_threadChunks.mutexStats, NULL); in main() 134 pthread_mutex_init(&g_threadChunks.mutexBAMsortBins, NULL); in main() 135 pthread_mutex_init(&g_threadChunks.mutexError, NULL); in main() 224 …>chunkFilesCat(P.inOut->outSAM, P.outFileTmp + "/Aligned.out.sam.chunk", g_threadChunks.chunkOutN); in main()
|
H A D | ErrorWarning.cpp | 11 pthread_mutex_lock(&g_threadChunks.mutexError); in exitWithError() 28 pthread_mutex_lock(&g_threadChunks.mutexError); in warningMessage() 36 pthread_mutex_unlock(&g_threadChunks.mutexError); in warningMessage()
|
H A D | ReadAlignChunk_mapChunk.cpp | 55 if (P.runThreadN>1) pthread_mutex_lock(&g_threadChunks.mutexOutSAM); in mapChunk() 59 if (P.runThreadN>1) pthread_mutex_unlock(&g_threadChunks.mutexOutSAM); in mapChunk() 116 if (P.runThreadN>1) pthread_mutex_lock(&g_threadChunks.mutexStats); in mapChunk() 119 if (P.runThreadN>1) pthread_mutex_unlock(&g_threadChunks.mutexStats); in mapChunk()
|
H A D | ParametersChimeric_initialize.cpp | 18 pthread_mutex_init(&g_threadChunks.mutexOutChimSAM, NULL); in initialize() 19 pthread_mutex_init(&g_threadChunks.mutexOutChimJunction, NULL); in initialize()
|
H A D | GlobalVariables.cpp | 3 ThreadControl g_threadChunks; variable
|
H A D | GlobalVariables.h | 6 extern ThreadControl g_threadChunks;
|
H A D | Parameters.cpp | 505 g_threadChunks.threadBool=(runThreadN>1); in inputParameters()
|