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Searched refs:g_threadChunks (Results 1 – 10 of 10) sorted by relevance

/dports/biology/star/STAR-2.7.9a/source/
H A DmapThreadsSpawn.cpp8 …int threadStatus=pthread_create(&g_threadChunks.threadArray[ithread], NULL, &g_threadChunks.thread… in mapThreadsSpawn()
14 pthread_mutex_lock(&g_threadChunks.mutexLogMain); in mapThreadsSpawn()
16 pthread_mutex_unlock(&g_threadChunks.mutexLogMain); in mapThreadsSpawn()
22 int threadStatus = pthread_join(g_threadChunks.threadArray[ithread], NULL); in mapThreadsSpawn()
28 pthread_mutex_lock(&g_threadChunks.mutexLogMain); in mapThreadsSpawn()
30 pthread_mutex_unlock(&g_threadChunks.mutexLogMain); in mapThreadsSpawn()
H A DReadAlignChunk_processChunks.cpp18 if (P.runThreadN>1) pthread_mutex_lock(&g_threadChunks.mutexInRead); in processChunks()
209 pthread_mutex_lock(&g_threadChunks.mutexLogMain); in processChunks()
216 pthread_mutex_unlock(&g_threadChunks.mutexLogMain); in processChunks()
223 iChunkIn=g_threadChunks.chunkInN;//to keep things consistent in processChunks()
224 g_threadChunks.chunkInN++; in processChunks()
227 iChunkIn=g_threadChunks.chunkInN; in processChunks()
228 g_threadChunks.chunkInN++; in processChunks()
265 pthread_mutex_lock(&g_threadChunks.mutexOutUnmappedFastx); in processChunks()
272 pthread_mutex_unlock(&g_threadChunks.mutexOutUnmappedFastx); in processChunks()
275 if (P.runThreadN>1) pthread_mutex_lock(&g_threadChunks.mutexLogMain); in processChunks()
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H A DBAMoutput.cpp58 if (g_threadChunks.threadBool) pthread_mutex_lock(&g_threadChunks.mutexOutSAM); in unsortedOneAlign()
60 if (g_threadChunks.threadBool) pthread_mutex_unlock(&g_threadChunks.mutexOutSAM); in unsortedOneAlign()
71 if (g_threadChunks.threadBool) pthread_mutex_lock(&g_threadChunks.mutexOutSAM); in unsortedFlush()
73 if (g_threadChunks.threadBool) pthread_mutex_unlock(&g_threadChunks.mutexOutSAM); in unsortedFlush()
122 if (P.runThreadN>1) pthread_mutex_lock(&g_threadChunks.mutexBAMsortBins); in coordBins()
146 if (P.runThreadN>1) pthread_mutex_unlock(&g_threadChunks.mutexBAMsortBins); in coordBins()
H A DSTAR.cpp127 g_threadChunks.threadArray=new pthread_t[P.runThreadN]; in main()
128 pthread_mutex_init(&g_threadChunks.mutexInRead, NULL); in main()
129 pthread_mutex_init(&g_threadChunks.mutexOutSAM, NULL); in main()
130 pthread_mutex_init(&g_threadChunks.mutexOutBAM1, NULL); in main()
131 pthread_mutex_init(&g_threadChunks.mutexOutUnmappedFastx, NULL); in main()
132 pthread_mutex_init(&g_threadChunks.mutexOutFilterBySJout, NULL); in main()
133 pthread_mutex_init(&g_threadChunks.mutexStats, NULL); in main()
134 pthread_mutex_init(&g_threadChunks.mutexBAMsortBins, NULL); in main()
135 pthread_mutex_init(&g_threadChunks.mutexError, NULL); in main()
224 …>chunkFilesCat(P.inOut->outSAM, P.outFileTmp + "/Aligned.out.sam.chunk", g_threadChunks.chunkOutN); in main()
H A DErrorWarning.cpp11 pthread_mutex_lock(&g_threadChunks.mutexError); in exitWithError()
28 pthread_mutex_lock(&g_threadChunks.mutexError); in warningMessage()
36 pthread_mutex_unlock(&g_threadChunks.mutexError); in warningMessage()
H A DReadAlignChunk_mapChunk.cpp55 if (P.runThreadN>1) pthread_mutex_lock(&g_threadChunks.mutexOutSAM); in mapChunk()
59 if (P.runThreadN>1) pthread_mutex_unlock(&g_threadChunks.mutexOutSAM); in mapChunk()
116 if (P.runThreadN>1) pthread_mutex_lock(&g_threadChunks.mutexStats); in mapChunk()
119 if (P.runThreadN>1) pthread_mutex_unlock(&g_threadChunks.mutexStats); in mapChunk()
H A DParametersChimeric_initialize.cpp18 pthread_mutex_init(&g_threadChunks.mutexOutChimSAM, NULL); in initialize()
19 pthread_mutex_init(&g_threadChunks.mutexOutChimJunction, NULL); in initialize()
H A DGlobalVariables.cpp3 ThreadControl g_threadChunks; variable
H A DGlobalVariables.h6 extern ThreadControl g_threadChunks;
H A DParameters.cpp505 g_threadChunks.threadBool=(runThreadN>1); in inputParameters()