Searched refs:gammaLogLk (Results 1 – 1 of 1) sorted by relevance
846 bool gammaLogLk = false; /* compute gamma likelihood without reoptimizing branch lengths? */ variable1886 gammaLogLk = true; in main()2411 if (gammaLogLk && nRateCats > 1) { in main()6047 if (!gammaLogLk) in SetMLRates()6126 double gammaLogLk = GammaLogLk(&s, /*OUT*/gamma_loglk_sites); in RescaleGammaLogLk() local6129 nRateCats, gammaLogLk, s.alpha, 1/s.mult); in RescaleGammaLogLk()6134 nRateCats, gammaLogLk, s.alpha, 1/s.mult); in RescaleGammaLogLk()