Searched refs:gamma_median (Results 1 – 12 of 12) sorted by relevance
/dports/biology/iqtree/IQ-TREE-2.0.6/model/ |
H A D | modelpomomixture.cpp | 36 …eGamma(num_rate_cats, Params::getInstance().gamma_shape, Params::getInstance().gamma_median, tree); in ModelPoMoMixture()
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H A D | modelfactory.cpp | 797 site_rate = new RateGammaInvar(num_rate_cats, gamma_shape, params.gamma_median, in ModelFactory() 804 site_rate = new RateGamma(num_rate_cats, gamma_shape, params.gamma_median, tree); in ModelFactory()
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/dports/biology/iqtree/IQ-TREE-2.0.6/utils/ |
H A D | tools.h | 1523 bool gamma_median;
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H A D | tools.cpp | 935 params.gamma_median = false; in parseArg() 2623 params.gamma_median = false; in parseArg() 2627 params.gamma_median = true; in parseArg()
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/dports/biology/phyml/phyml-3.3.20200621/src/ |
H A D | cl.c | 518 io->mod->ras->gamma_median = 1; in Read_Command_Line()
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H A D | models.c | 689 mod->ras->gamma_median); in Update_RAS()
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H A D | m4.c | 348 …creteGamma(m4mod->h_fq,m4mod->multipl,m4mod->alpha,m4mod->alpha,m4mod->n_h,mod->ras->gamma_median); in M4_Update_Qmat()
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H A D | utilities.h | 1046 …int gamma_median; /*! 1: use the median of each bin in the discrete gamma distribu… member
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H A D | io.c | 2138 PhyML_Printf("\n. gamma_median=%d",mod->ras->gamma_median); in Print_Model() 2912 …tf("\n . 'Middle' of each rate class:\t\t\t %s",(io->mod->ras->gamma_median)?("median"):("m… in Print_Settings()
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H A D | lk.c | 1921 mod->ras->alpha->v,mod->ras->n_catg,mod->ras->gamma_median); in Lk_Given_Two_Seq()
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H A D | init.c | 656 mod->ras->gamma_median = NO; in Set_Defaults_Model()
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H A D | utilities.c | 3764 cpy->ras->gamma_median = ori->ras->gamma_median; in Record_Model()
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