Searched refs:gapExtendScale (Results 1 – 3 of 3) sorted by relevance
42 float gapOpenScale, gapExtendScale; in pairwiseAlign() local90 gapExtendScale = scaleValues.gapExtendScale; in pairwiseAlign()133 _gapExtend = static_cast<int>(_pwGapExtend * intScale * gapExtendScale); in pairwiseAlign()
248 float gapExtendScale; member
279 scale.gapOpenScale = scale.gapExtendScale = 1.0; in getPairwiseMatrix()302 scale.gapExtendScale = 0.751; in getPairwiseMatrix()383 << scale.gapOpenScale << ", gapExtendScale = " << scale.gapExtendScale in getPairwiseMatrix()