/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/util/bitset/ |
H A D | bmblocks.h | 267 gap_word_t* gap_blk = BMGAP_PTR(block); in operator() local 270 if (gap_is_all_zero(gap_blk)) in operator() 277 if (gap_is_all_one(gap_blk)) in operator() 285 unsigned len = bm::gap_length(gap_blk); in operator() 291 bm::gap_convert_to_bitset(blk, gap_blk); in operator() 1235 return (bm::word_t*)gap_blk; in set_gap_block() 1371 bm::gap_word_t* gap_blk = in opt_copy_bit_block() local 1419 bm::gap_word_t* gap_blk = in optimize_bit_block() local 2207 if (bm::gap_is_all_one(gap_blk)) in optimize_tree() 2226 gap_blk = new_gap_blk; in optimize_tree() [all …]
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H A D | bm.h | 2020 bool gap_block_set(bm::gap_word_t* gap_blk, 3866 old_len = bm::gap_length(gap_blk)-1; in gap_block_set() 3884 old_len = bm::gap_length(gap_blk)-1; in gap_block_set_no_ret() 3912 bm::gap_word_t* gap_blk = BMGAP_PTR(blk); in inc() local 3953 bm::gap_word_t* gap_blk = BMGAP_PTR(blk); in set_bit_conditional_impl() local 4021 bm::gap_word_t* gap_blk = BMGAP_PTR(blk); in and_bit_no_check() local 6218 bm::gap_add_to_bitset(new_blk, gap_blk); in combine_operation_block_or() 6311 res = bm::gap_operation_xor(gap_blk, in combine_operation_block_xor() 6323 bm::gap_xor_to_bitset(new_blk, gap_blk); in combine_operation_block_xor() 6386 res = bm::gap_operation_and(gap_blk, in combine_operation_block_and() [all …]
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H A D | bmalgo_impl.h | 1050 bm::gap_word_t* gap_blk = BMGAP_PTR(blk); in combine_or() local 1059 bm::gap_set_value(true, gap_blk, nbit, &is_set); in combine_or() 1062 bman.extend_gap_block(nblock, gap_blk); in combine_or() 1131 bm::gap_word_t* gap_blk = BMGAP_PTR(blk); in combine_xor() local 1139 is_set = bm::gap_test_unr(gap_blk, nbit); in combine_xor() 1144 gap_set_value(is_set, gap_blk, nbit, &is_set); in combine_xor() 1147 bman.extend_gap_block(nblock, gap_blk); in combine_xor() 1219 bm::gap_word_t* gap_blk = BMGAP_PTR(blk); in combine_sub() local 1227 is_set = bm::gap_test_unr(gap_blk, nbit); in combine_sub() 1232 gap_set_value(false, gap_blk, nbit, &is_set); in combine_sub() [all …]
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H A D | bmsparsevec.h | 1235 const bm::gap_word_t* gap_blk = BMGAP_PTR(blk); in gather() local 1244 unsigned gidx = bm::gap_bfind(gap_blk, nbit, &is_set); in gather() 1245 unsigned gap_value = gap_blk[gidx]; in gather() 1271 is_set = bm::gap_test_unr(gap_blk, nbit); in gather()
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H A D | bmserial.h | 3840 gap_word_t* gap_blk = in deserialize_gap() local 3842 gap_word_t* gap_blk_ptr = BMGAP_PTR(gap_blk); in deserialize_gap() 3845 blk = bman.set_block(nb, (bm::word_t*)BMPTR_SETBIT0(gap_blk)); in deserialize_gap() 3849 dec.get_16(gap_blk + 1, len - 1); in deserialize_gap() 3850 gap_blk[len] = bm::gap_max_bits - 1; in deserialize_gap()
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/util/bitset/ |
H A D | bmblocks.h | 267 gap_word_t* gap_blk = BMGAP_PTR(block); in operator() local 270 if (gap_is_all_zero(gap_blk)) in operator() 277 if (gap_is_all_one(gap_blk)) in operator() 285 unsigned len = bm::gap_length(gap_blk); in operator() 291 bm::gap_convert_to_bitset(blk, gap_blk); in operator() 1235 return (bm::word_t*)gap_blk; in set_gap_block() 1371 bm::gap_word_t* gap_blk = in opt_copy_bit_block() local 1419 bm::gap_word_t* gap_blk = in optimize_bit_block() local 2207 if (bm::gap_is_all_one(gap_blk)) in optimize_tree() 2226 gap_blk = new_gap_blk; in optimize_tree() [all …]
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H A D | bm.h | 2020 bool gap_block_set(bm::gap_word_t* gap_blk, 3866 old_len = bm::gap_length(gap_blk)-1; in gap_block_set() 3884 old_len = bm::gap_length(gap_blk)-1; in gap_block_set_no_ret() 3912 bm::gap_word_t* gap_blk = BMGAP_PTR(blk); in inc() local 3953 bm::gap_word_t* gap_blk = BMGAP_PTR(blk); in set_bit_conditional_impl() local 4021 bm::gap_word_t* gap_blk = BMGAP_PTR(blk); in and_bit_no_check() local 6218 bm::gap_add_to_bitset(new_blk, gap_blk); in combine_operation_block_or() 6311 res = bm::gap_operation_xor(gap_blk, in combine_operation_block_xor() 6323 bm::gap_xor_to_bitset(new_blk, gap_blk); in combine_operation_block_xor() 6386 res = bm::gap_operation_and(gap_blk, in combine_operation_block_and() [all …]
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H A D | bmalgo_impl.h | 1050 bm::gap_word_t* gap_blk = BMGAP_PTR(blk); in combine_or() local 1059 bm::gap_set_value(true, gap_blk, nbit, &is_set); in combine_or() 1062 bman.extend_gap_block(nblock, gap_blk); in combine_or() 1131 bm::gap_word_t* gap_blk = BMGAP_PTR(blk); in combine_xor() local 1139 is_set = bm::gap_test_unr(gap_blk, nbit); in combine_xor() 1144 gap_set_value(is_set, gap_blk, nbit, &is_set); in combine_xor() 1147 bman.extend_gap_block(nblock, gap_blk); in combine_xor() 1219 bm::gap_word_t* gap_blk = BMGAP_PTR(blk); in combine_sub() local 1227 is_set = bm::gap_test_unr(gap_blk, nbit); in combine_sub() 1232 gap_set_value(false, gap_blk, nbit, &is_set); in combine_sub() [all …]
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H A D | bmsparsevec.h | 1235 const bm::gap_word_t* gap_blk = BMGAP_PTR(blk); in gather() local 1244 unsigned gidx = bm::gap_bfind(gap_blk, nbit, &is_set); in gather() 1245 unsigned gap_value = gap_blk[gidx]; in gather() 1271 is_set = bm::gap_test_unr(gap_blk, nbit); in gather()
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H A D | bmserial.h | 3840 gap_word_t* gap_blk = in deserialize_gap() local 3842 gap_word_t* gap_blk_ptr = BMGAP_PTR(gap_blk); in deserialize_gap() 3845 blk = bman.set_block(nb, (bm::word_t*)BMPTR_SETBIT0(gap_blk)); in deserialize_gap() 3849 dec.get_16(gap_blk + 1, len - 1); in deserialize_gap() 3850 gap_blk[len] = bm::gap_max_bits - 1; in deserialize_gap()
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