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Searched refs:gap_blk (Results 1 – 10 of 10) sorted by relevance

/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/util/bitset/
H A Dbmblocks.h267 gap_word_t* gap_blk = BMGAP_PTR(block); in operator() local
270 if (gap_is_all_zero(gap_blk)) in operator()
277 if (gap_is_all_one(gap_blk)) in operator()
285 unsigned len = bm::gap_length(gap_blk); in operator()
291 bm::gap_convert_to_bitset(blk, gap_blk); in operator()
1235 return (bm::word_t*)gap_blk; in set_gap_block()
1371 bm::gap_word_t* gap_blk = in opt_copy_bit_block() local
1419 bm::gap_word_t* gap_blk = in optimize_bit_block() local
2207 if (bm::gap_is_all_one(gap_blk)) in optimize_tree()
2226 gap_blk = new_gap_blk; in optimize_tree()
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H A Dbm.h2020 bool gap_block_set(bm::gap_word_t* gap_blk,
3866 old_len = bm::gap_length(gap_blk)-1; in gap_block_set()
3884 old_len = bm::gap_length(gap_blk)-1; in gap_block_set_no_ret()
3912 bm::gap_word_t* gap_blk = BMGAP_PTR(blk); in inc() local
3953 bm::gap_word_t* gap_blk = BMGAP_PTR(blk); in set_bit_conditional_impl() local
4021 bm::gap_word_t* gap_blk = BMGAP_PTR(blk); in and_bit_no_check() local
6218 bm::gap_add_to_bitset(new_blk, gap_blk); in combine_operation_block_or()
6311 res = bm::gap_operation_xor(gap_blk, in combine_operation_block_xor()
6323 bm::gap_xor_to_bitset(new_blk, gap_blk); in combine_operation_block_xor()
6386 res = bm::gap_operation_and(gap_blk, in combine_operation_block_and()
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H A Dbmalgo_impl.h1050 bm::gap_word_t* gap_blk = BMGAP_PTR(blk); in combine_or() local
1059 bm::gap_set_value(true, gap_blk, nbit, &is_set); in combine_or()
1062 bman.extend_gap_block(nblock, gap_blk); in combine_or()
1131 bm::gap_word_t* gap_blk = BMGAP_PTR(blk); in combine_xor() local
1139 is_set = bm::gap_test_unr(gap_blk, nbit); in combine_xor()
1144 gap_set_value(is_set, gap_blk, nbit, &is_set); in combine_xor()
1147 bman.extend_gap_block(nblock, gap_blk); in combine_xor()
1219 bm::gap_word_t* gap_blk = BMGAP_PTR(blk); in combine_sub() local
1227 is_set = bm::gap_test_unr(gap_blk, nbit); in combine_sub()
1232 gap_set_value(false, gap_blk, nbit, &is_set); in combine_sub()
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H A Dbmsparsevec.h1235 const bm::gap_word_t* gap_blk = BMGAP_PTR(blk); in gather() local
1244 unsigned gidx = bm::gap_bfind(gap_blk, nbit, &is_set); in gather()
1245 unsigned gap_value = gap_blk[gidx]; in gather()
1271 is_set = bm::gap_test_unr(gap_blk, nbit); in gather()
H A Dbmserial.h3840 gap_word_t* gap_blk = in deserialize_gap() local
3842 gap_word_t* gap_blk_ptr = BMGAP_PTR(gap_blk); in deserialize_gap()
3845 blk = bman.set_block(nb, (bm::word_t*)BMPTR_SETBIT0(gap_blk)); in deserialize_gap()
3849 dec.get_16(gap_blk + 1, len - 1); in deserialize_gap()
3850 gap_blk[len] = bm::gap_max_bits - 1; in deserialize_gap()
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/util/bitset/
H A Dbmblocks.h267 gap_word_t* gap_blk = BMGAP_PTR(block); in operator() local
270 if (gap_is_all_zero(gap_blk)) in operator()
277 if (gap_is_all_one(gap_blk)) in operator()
285 unsigned len = bm::gap_length(gap_blk); in operator()
291 bm::gap_convert_to_bitset(blk, gap_blk); in operator()
1235 return (bm::word_t*)gap_blk; in set_gap_block()
1371 bm::gap_word_t* gap_blk = in opt_copy_bit_block() local
1419 bm::gap_word_t* gap_blk = in optimize_bit_block() local
2207 if (bm::gap_is_all_one(gap_blk)) in optimize_tree()
2226 gap_blk = new_gap_blk; in optimize_tree()
[all …]
H A Dbm.h2020 bool gap_block_set(bm::gap_word_t* gap_blk,
3866 old_len = bm::gap_length(gap_blk)-1; in gap_block_set()
3884 old_len = bm::gap_length(gap_blk)-1; in gap_block_set_no_ret()
3912 bm::gap_word_t* gap_blk = BMGAP_PTR(blk); in inc() local
3953 bm::gap_word_t* gap_blk = BMGAP_PTR(blk); in set_bit_conditional_impl() local
4021 bm::gap_word_t* gap_blk = BMGAP_PTR(blk); in and_bit_no_check() local
6218 bm::gap_add_to_bitset(new_blk, gap_blk); in combine_operation_block_or()
6311 res = bm::gap_operation_xor(gap_blk, in combine_operation_block_xor()
6323 bm::gap_xor_to_bitset(new_blk, gap_blk); in combine_operation_block_xor()
6386 res = bm::gap_operation_and(gap_blk, in combine_operation_block_and()
[all …]
H A Dbmalgo_impl.h1050 bm::gap_word_t* gap_blk = BMGAP_PTR(blk); in combine_or() local
1059 bm::gap_set_value(true, gap_blk, nbit, &is_set); in combine_or()
1062 bman.extend_gap_block(nblock, gap_blk); in combine_or()
1131 bm::gap_word_t* gap_blk = BMGAP_PTR(blk); in combine_xor() local
1139 is_set = bm::gap_test_unr(gap_blk, nbit); in combine_xor()
1144 gap_set_value(is_set, gap_blk, nbit, &is_set); in combine_xor()
1147 bman.extend_gap_block(nblock, gap_blk); in combine_xor()
1219 bm::gap_word_t* gap_blk = BMGAP_PTR(blk); in combine_sub() local
1227 is_set = bm::gap_test_unr(gap_blk, nbit); in combine_sub()
1232 gap_set_value(false, gap_blk, nbit, &is_set); in combine_sub()
[all …]
H A Dbmsparsevec.h1235 const bm::gap_word_t* gap_blk = BMGAP_PTR(blk); in gather() local
1244 unsigned gidx = bm::gap_bfind(gap_blk, nbit, &is_set); in gather()
1245 unsigned gap_value = gap_blk[gidx]; in gather()
1271 is_set = bm::gap_test_unr(gap_blk, nbit); in gather()
H A Dbmserial.h3840 gap_word_t* gap_blk = in deserialize_gap() local
3842 gap_word_t* gap_blk_ptr = BMGAP_PTR(gap_blk); in deserialize_gap()
3845 blk = bman.set_block(nb, (bm::word_t*)BMPTR_SETBIT0(gap_blk)); in deserialize_gap()
3849 dec.get_16(gap_blk + 1, len - 1); in deserialize_gap()
3850 gap_blk[len] = bm::gap_max_bits - 1; in deserialize_gap()