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Searched refs:gap_block (Results 1 – 12 of 12) sorted by relevance

/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/util/bitset/
H A Dbmblocks.h189 cnt = bm::gap_length(gap_block) - 1; in block_count()
826 BM_ASSERT(gap_block); in clone_gap_block()
829 unsigned len = bm::gap_length(gap_block); in clone_gap_block()
859 convert_gap2bitset(i, j, gap_block); in clone_gap_block()
881 if (bm::gap_is_all_zero(gap_block))
884 if (bm::gap_is_all_one(gap_block))
1082 return (bm::word_t*)gap_block;
1115 block = (bm::word_t*)gap_block; in check_allocate_block()
1480 return convert_gap2bitset(i, j, gap_block);
1498 gap_block = gap_block ? gap_block : BMGAP_PTR(block);
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H A Dbmserial.h1389 unsigned len = bm::gap_length(gap_block); in interpolated_encode_gap_block()
1393 BM_ASSERT(gap_block[len-1] == 65535); in interpolated_encode_gap_block()
1395 bm::gap_word_t head = gap_block[0]; in interpolated_encode_gap_block()
1397 bm::gap_word_t min_v = gap_block[1]; in interpolated_encode_gap_block()
1439 enc.put_16(gap_block, len-1); in interpolated_encode_gap_block()
1449 unsigned len = gap_length(gap_block); in gamma_gap_block()
1458 enc.put_16(gap_block[0]); in gamma_gap_block()
1479 enc.put_16(gap_block, len-1); in gamma_gap_block()
1589 bm::gap_word_t min_v = gap_block[0]; in interpolated_gap_array()
1954 unsigned len = bm::gap_length(gap_block); in find_gap_best_encoding()
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H A Dbmintervals.h649 const bm::gap_word_t* BMRESTRICT gap_block = BMGAP_PTR(block); in go_to_impl() local
653 unsigned gap_pos = bm::gap_bfind(gap_block, nbit, &is_set); in go_to_impl()
656 interval_.second = (nb * bm::gap_max_bits) + gap_block[gap_pos]; in go_to_impl()
657 if (gap_block[gap_pos] == bm::gap_max_bits-1) in go_to_impl()
672 gap_ptr_ = gap_block + gap_pos; in go_to_impl()
H A Dbmxor.h1696 const bm::gap_word_t* gap_block = BMGAP_PTR(block); in deoptimize_gap_blocks() local
1697 unsigned gc = bm::gap_length(gap_block); in deoptimize_gap_blocks()
H A Dbm.h2428 const bm::gap_word_t* const gap_block = BMGAP_PTR(block); in build_rs_index() local
2430 bm::gap_bit_count_range(gap_block, 0, bm::rs3_border0); in build_rs_index()
2432 bm::gap_bit_count_range(gap_block, in build_rs_index()
H A Dbmfunc.h8456 const bm::gap_word_t* const gap_block = BMGAP_PTR(block); in block_find_rank() local
8457 rank = bm::gap_find_rank(gap_block, rank, nbit_from, nbit_pos); in block_find_rank()
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/util/bitset/
H A Dbmblocks.h189 cnt = bm::gap_length(gap_block) - 1; in block_count()
826 BM_ASSERT(gap_block); in clone_gap_block()
829 unsigned len = bm::gap_length(gap_block); in clone_gap_block()
859 convert_gap2bitset(i, j, gap_block); in clone_gap_block()
881 if (bm::gap_is_all_zero(gap_block))
884 if (bm::gap_is_all_one(gap_block))
1082 return (bm::word_t*)gap_block;
1115 block = (bm::word_t*)gap_block; in check_allocate_block()
1480 return convert_gap2bitset(i, j, gap_block);
1498 gap_block = gap_block ? gap_block : BMGAP_PTR(block);
[all …]
H A Dbmserial.h1389 unsigned len = bm::gap_length(gap_block); in interpolated_encode_gap_block()
1393 BM_ASSERT(gap_block[len-1] == 65535); in interpolated_encode_gap_block()
1395 bm::gap_word_t head = gap_block[0]; in interpolated_encode_gap_block()
1397 bm::gap_word_t min_v = gap_block[1]; in interpolated_encode_gap_block()
1439 enc.put_16(gap_block, len-1); in interpolated_encode_gap_block()
1449 unsigned len = gap_length(gap_block); in gamma_gap_block()
1458 enc.put_16(gap_block[0]); in gamma_gap_block()
1479 enc.put_16(gap_block, len-1); in gamma_gap_block()
1589 bm::gap_word_t min_v = gap_block[0]; in interpolated_gap_array()
1954 unsigned len = bm::gap_length(gap_block); in find_gap_best_encoding()
[all …]
H A Dbmintervals.h649 const bm::gap_word_t* BMRESTRICT gap_block = BMGAP_PTR(block); in go_to_impl() local
653 unsigned gap_pos = bm::gap_bfind(gap_block, nbit, &is_set); in go_to_impl()
656 interval_.second = (nb * bm::gap_max_bits) + gap_block[gap_pos]; in go_to_impl()
657 if (gap_block[gap_pos] == bm::gap_max_bits-1) in go_to_impl()
672 gap_ptr_ = gap_block + gap_pos; in go_to_impl()
H A Dbmxor.h1696 const bm::gap_word_t* gap_block = BMGAP_PTR(block); in deoptimize_gap_blocks() local
1697 unsigned gc = bm::gap_length(gap_block); in deoptimize_gap_blocks()
H A Dbm.h2428 const bm::gap_word_t* const gap_block = BMGAP_PTR(block); in build_rs_index() local
2430 bm::gap_bit_count_range(gap_block, 0, bm::rs3_border0); in build_rs_index()
2432 bm::gap_bit_count_range(gap_block, in build_rs_index()
H A Dbmfunc.h8456 const bm::gap_word_t* const gap_block = BMGAP_PTR(block); in block_find_rank() local
8457 rank = bm::gap_find_rank(gap_block, rank, nbit_from, nbit_pos); in block_find_rank()