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Searched refs:gapl (Results 1 – 16 of 16) sorted by relevance

/dports/biology/primer3/primer3-2.3.6/src/
H A Ddpal.c133 a->gapl = -200; in set_dpal_args()
152 a->gapl = -100; in dpal_set_default_nt_args()
369 register int gap = in->gap, gapl = in->gapl, max_gap = in->max_gap; in _dpal_generic() local
458 c = S[i-k][j-1] + gap + gapl*(k-2); in _dpal_generic()
471 c = S[i-1][j-k] + gap + gapl*(k-2); in _dpal_generic()
595 register int gap = in->gap, gapl = in->gapl, max_gap = in->max_gap; in _dpal_long_nopath_generic() local
682 if((c = S[mgy-1][i-k] + gap + gapl*(k-2)) > score)score = c; in _dpal_long_nopath_generic()
685 if((c = S[mgy-k][i-1] + gap + gapl*(k-2)) > score)score=c; in _dpal_long_nopath_generic()
H A Ddpal.h110 int gapl; /* The "gap extension" penalty. */ member
H A Dntdpal_main.c102 a.gapl = (int) (strtod(argv[i+1],(char **)NULL) * -100); in main()
/dports/biology/ugene/ugene-40.1/src/plugins_3rdparty/primer3/src/primer3_core/
H A Ddpal.c144 a->gapl = -100;
377 register int gap = in->gap, gapl = in->gapl, max_gap = in->max_gap; local
466 c = S[i-k][j-1] + gap + gapl*(k-2);
479 c = S[i-1][j-k] + gap + gapl*(k-2);
605 register int gap = in->gap, gapl = in->gapl, max_gap = in->max_gap; local
692 if((c = S[mgy-1][i-k] + gap + gapl*(k-2)) > score)score = c;
695 if((c = S[mgy-k][i-1] + gap + gapl*(k-2)) > score)score=c;
H A Ddpal.h102 int gapl; /* The "gap extension" penalty. */ member
H A Dprimer3_main.c1997 a->gapl = -200;
/dports/math/trlan/trlan-201009/SRC/
H A Dtrlan.f90875 Real(8) :: gapl, gapr local
962 gapl = alpha(nev) - alpha(1)
965 gapl = Min(gapl, gapr)
966 If (res(i).Ge.gapl) Then
969 err(i) = res(i) * res(i) / gapl
971 gapl = gapr
973 If (res(nev).Ge.gapl) Then
976 err(nev) = res(nev) * res(nev) / gapl
/dports/biology/p5-BioPerl/BioPerl-1.7.7/t/data/
H A Dbug2473.fasta21 … opt bits E(55673) %_id %_sim bs alen an0 ax0 pn0 px0 an1 ax1 pn1 px1 gapq gapl fs
/dports/science/hdf5-18/hdf5-1.8.21/fortran/test/
H A DtH5G_1_8.f901912 INTEGER(HID_T) :: gapl = (-1), dapl = (-1), tapl = (-1) ! Other property lists local
2101 CALL H5Pcreate_f(H5P_GROUP_ACCESS_F,gapl,error)
2110 CALL H5Pset_nlinks_f(gapl, nlinks, error)
2121 CALL H5Gopen_f(fid, "soft17", gid, error, gapl)
2140 CALL h5pclose_f(gapl, error)
/dports/science/hdf5/hdf5-1.10.6/fortran/test/
H A DtH5G_1_8.F901879 INTEGER(HID_T) :: gapl = (-1), dapl = (-1), tapl = (-1) ! Other property lists local
2068 CALL H5Pcreate_f(H5P_GROUP_ACCESS_F,gapl,error)
2077 CALL H5Pset_nlinks_f(gapl, nlinks, error)
2088 CALL H5Gopen_f(fid, "soft17", gid, error, gapl)
2107 CALL h5pclose_f(gapl, error)
/dports/science/hdf5/hdf5-1.10.6/test/
H A Dlinks.c3708 if((gapl = H5Pcreate(H5P_GROUP_ACCESS)) < 0) TEST_ERROR in external_set_elink_acc_flags()
3754 ret = H5Pset_elink_acc_flags(gapl, H5F_ACC_TRUNC); in external_set_elink_acc_flags()
3758 ret = H5Pset_elink_acc_flags(gapl, H5F_ACC_EXCL); in external_set_elink_acc_flags()
3762 ret = H5Pset_elink_acc_flags(gapl, H5F_ACC_CREAT); in external_set_elink_acc_flags()
3872 if(H5Pclose(gapl) < 0) TEST_ERROR in external_set_elink_acc_flags()
3883 H5Pclose(gapl); in external_set_elink_acc_flags()
4032 if(H5Pclose(gapl) < 0) TEST_ERROR in external_set_elink_cb()
4042 H5Pclose(gapl); in external_set_elink_cb()
8420 if(H5Pset_nlinks(gapl, nlinks) < 0) TEST_ERROR in lapl_nlinks()
8437 if(H5Pclose(gapl) < 0) TEST_ERROR in lapl_nlinks()
[all …]
/dports/science/hdf5-18/hdf5-1.8.21/test/
H A Dlinks.c3964 if((gapl = H5Pcreate(H5P_GROUP_ACCESS)) < 0) TEST_ERROR in external_set_elink_acc_flags()
4001 ret = H5Pset_elink_acc_flags(gapl, H5F_ACC_TRUNC); in external_set_elink_acc_flags()
4005 ret = H5Pset_elink_acc_flags(gapl, H5F_ACC_EXCL); in external_set_elink_acc_flags()
4009 ret = H5Pset_elink_acc_flags(gapl, H5F_ACC_CREAT); in external_set_elink_acc_flags()
4035 if(H5Pclose(gapl) < 0) TEST_ERROR in external_set_elink_acc_flags()
4046 H5Pclose(gapl); in external_set_elink_acc_flags()
4201 if(H5Pclose(gapl) < 0) TEST_ERROR in external_set_elink_cb()
4211 H5Pclose(gapl); in external_set_elink_cb()
8981 if(H5Pset_nlinks(gapl, nlinks) < 0) TEST_ERROR in lapl_nlinks()
8998 if(H5Pclose(gapl) < 0) TEST_ERROR in lapl_nlinks()
[all …]
/dports/lang/polyml/polyml-5.8.2/mlsource/extra/Win/
H A DFont.sml310 fun ExtTextOut (h,({x,y}:POINT), option, rect, text, gapl) =
314 case gapl of
316 | _ => l2Vec gapl
/dports/science/afni/afni-AFNI_21.3.16/src/
H A Dsvdlib.c2554 double gapl, gap; in error_bound() local
2576 gapl = ritz[step] - ritz[0]; in error_bound()
2578 gap = gapl; in error_bound()
2579 if (i < step) gapl = ritz[i+1] - ritz[i]; in error_bound()
2580 gap = svd_dmin(gap, gapl); in error_bound()
/dports/biology/fasta3/fasta-36.3.8/doc/
H A Dfasta_guide.tex869 %_id %_gid sw alen an0 ax0 pn0 px0 an1 ax1 pn1 px1 gapq gapl fs
885 \texttt{gapl} report the number of gaps in the query and library
/dports/devel/cld2/cld-20150505/internal/
H A Dtest_shuffle_1000_48_666.utf888918 …ala ~ dipaké ku kaum lalaki minangka bagian ti pakéan ~ naék géboy, atawa gaplék hungkul, jeung di…