/dports/biology/primer3/primer3-2.3.6/src/ |
H A D | dpal.c | 133 a->gapl = -200; in set_dpal_args() 152 a->gapl = -100; in dpal_set_default_nt_args() 369 register int gap = in->gap, gapl = in->gapl, max_gap = in->max_gap; in _dpal_generic() local 458 c = S[i-k][j-1] + gap + gapl*(k-2); in _dpal_generic() 471 c = S[i-1][j-k] + gap + gapl*(k-2); in _dpal_generic() 595 register int gap = in->gap, gapl = in->gapl, max_gap = in->max_gap; in _dpal_long_nopath_generic() local 682 if((c = S[mgy-1][i-k] + gap + gapl*(k-2)) > score)score = c; in _dpal_long_nopath_generic() 685 if((c = S[mgy-k][i-1] + gap + gapl*(k-2)) > score)score=c; in _dpal_long_nopath_generic()
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H A D | dpal.h | 110 int gapl; /* The "gap extension" penalty. */ member
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H A D | ntdpal_main.c | 102 a.gapl = (int) (strtod(argv[i+1],(char **)NULL) * -100); in main()
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/dports/biology/ugene/ugene-40.1/src/plugins_3rdparty/primer3/src/primer3_core/ |
H A D | dpal.c | 144 a->gapl = -100; 377 register int gap = in->gap, gapl = in->gapl, max_gap = in->max_gap; local 466 c = S[i-k][j-1] + gap + gapl*(k-2); 479 c = S[i-1][j-k] + gap + gapl*(k-2); 605 register int gap = in->gap, gapl = in->gapl, max_gap = in->max_gap; local 692 if((c = S[mgy-1][i-k] + gap + gapl*(k-2)) > score)score = c; 695 if((c = S[mgy-k][i-1] + gap + gapl*(k-2)) > score)score=c;
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H A D | dpal.h | 102 int gapl; /* The "gap extension" penalty. */ member
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H A D | primer3_main.c | 1997 a->gapl = -200;
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/dports/math/trlan/trlan-201009/SRC/ |
H A D | trlan.f90 | 875 Real(8) :: gapl, gapr local 962 gapl = alpha(nev) - alpha(1) 965 gapl = Min(gapl, gapr) 966 If (res(i).Ge.gapl) Then 969 err(i) = res(i) * res(i) / gapl 971 gapl = gapr 973 If (res(nev).Ge.gapl) Then 976 err(nev) = res(nev) * res(nev) / gapl
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/dports/biology/p5-BioPerl/BioPerl-1.7.7/t/data/ |
H A D | bug2473.fasta | 21 … opt bits E(55673) %_id %_sim bs alen an0 ax0 pn0 px0 an1 ax1 pn1 px1 gapq gapl fs
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/dports/science/hdf5-18/hdf5-1.8.21/fortran/test/ |
H A D | tH5G_1_8.f90 | 1912 INTEGER(HID_T) :: gapl = (-1), dapl = (-1), tapl = (-1) ! Other property lists local 2101 CALL H5Pcreate_f(H5P_GROUP_ACCESS_F,gapl,error) 2110 CALL H5Pset_nlinks_f(gapl, nlinks, error) 2121 CALL H5Gopen_f(fid, "soft17", gid, error, gapl) 2140 CALL h5pclose_f(gapl, error)
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/dports/science/hdf5/hdf5-1.10.6/fortran/test/ |
H A D | tH5G_1_8.F90 | 1879 INTEGER(HID_T) :: gapl = (-1), dapl = (-1), tapl = (-1) ! Other property lists local 2068 CALL H5Pcreate_f(H5P_GROUP_ACCESS_F,gapl,error) 2077 CALL H5Pset_nlinks_f(gapl, nlinks, error) 2088 CALL H5Gopen_f(fid, "soft17", gid, error, gapl) 2107 CALL h5pclose_f(gapl, error)
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/dports/science/hdf5/hdf5-1.10.6/test/ |
H A D | links.c | 3708 if((gapl = H5Pcreate(H5P_GROUP_ACCESS)) < 0) TEST_ERROR in external_set_elink_acc_flags() 3754 ret = H5Pset_elink_acc_flags(gapl, H5F_ACC_TRUNC); in external_set_elink_acc_flags() 3758 ret = H5Pset_elink_acc_flags(gapl, H5F_ACC_EXCL); in external_set_elink_acc_flags() 3762 ret = H5Pset_elink_acc_flags(gapl, H5F_ACC_CREAT); in external_set_elink_acc_flags() 3872 if(H5Pclose(gapl) < 0) TEST_ERROR in external_set_elink_acc_flags() 3883 H5Pclose(gapl); in external_set_elink_acc_flags() 4032 if(H5Pclose(gapl) < 0) TEST_ERROR in external_set_elink_cb() 4042 H5Pclose(gapl); in external_set_elink_cb() 8420 if(H5Pset_nlinks(gapl, nlinks) < 0) TEST_ERROR in lapl_nlinks() 8437 if(H5Pclose(gapl) < 0) TEST_ERROR in lapl_nlinks() [all …]
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/dports/science/hdf5-18/hdf5-1.8.21/test/ |
H A D | links.c | 3964 if((gapl = H5Pcreate(H5P_GROUP_ACCESS)) < 0) TEST_ERROR in external_set_elink_acc_flags() 4001 ret = H5Pset_elink_acc_flags(gapl, H5F_ACC_TRUNC); in external_set_elink_acc_flags() 4005 ret = H5Pset_elink_acc_flags(gapl, H5F_ACC_EXCL); in external_set_elink_acc_flags() 4009 ret = H5Pset_elink_acc_flags(gapl, H5F_ACC_CREAT); in external_set_elink_acc_flags() 4035 if(H5Pclose(gapl) < 0) TEST_ERROR in external_set_elink_acc_flags() 4046 H5Pclose(gapl); in external_set_elink_acc_flags() 4201 if(H5Pclose(gapl) < 0) TEST_ERROR in external_set_elink_cb() 4211 H5Pclose(gapl); in external_set_elink_cb() 8981 if(H5Pset_nlinks(gapl, nlinks) < 0) TEST_ERROR in lapl_nlinks() 8998 if(H5Pclose(gapl) < 0) TEST_ERROR in lapl_nlinks() [all …]
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/dports/lang/polyml/polyml-5.8.2/mlsource/extra/Win/ |
H A D | Font.sml | 310 fun ExtTextOut (h,({x,y}:POINT), option, rect, text, gapl) = 314 case gapl of 316 | _ => l2Vec gapl
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/dports/science/afni/afni-AFNI_21.3.16/src/ |
H A D | svdlib.c | 2554 double gapl, gap; in error_bound() local 2576 gapl = ritz[step] - ritz[0]; in error_bound() 2578 gap = gapl; in error_bound() 2579 if (i < step) gapl = ritz[i+1] - ritz[i]; in error_bound() 2580 gap = svd_dmin(gap, gapl); in error_bound()
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/dports/biology/fasta3/fasta-36.3.8/doc/ |
H A D | fasta_guide.tex | 869 %_id %_gid sw alen an0 ax0 pn0 px0 an1 ax1 pn1 px1 gapq gapl fs 885 \texttt{gapl} report the number of gaps in the query and library
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/dports/devel/cld2/cld-20150505/internal/ |
H A D | test_shuffle_1000_48_666.utf8 | 88918 …ala ~ dipaké ku kaum lalaki minangka bagian ti pakéan ~ naék géboy, atawa gaplék hungkul, jeung di…
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