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Searched refs:gcglen (Results 1 – 5 of 5) sorted by relevance

/dports/biology/emboss/EMBOSS-6.6.0/emboss/
H A Ddbxgcg.c530 ajlong gcglen = 0; in dbxgcg_gcggetent() local
592 ajStrToLong(dbxgcgTmpstr, &gcglen); in dbxgcg_gcggetent()
595 entry->id, dbxgcgGcgdate, dbxgcgGcgtype, dbxgcgTmpstr, gcglen); in dbxgcg_gcggetent()
625 rblock = (gcglen+3)/4; in dbxgcg_gcggetent()
629 ajFileSeek(infs,gcglen+1,SEEK_CUR); in dbxgcg_gcggetent()
642 return gcglen; in dbxgcg_gcggetent()
647 return gcglen; in dbxgcg_gcggetent()
671 ajlong gcglen; in dbxgcg_pirgetent() local
734 gcglen = 0; in dbxgcg_pirgetent()
745 gcglen += ajStrGetLen(dbxgcgSeqline); in dbxgcg_pirgetent()
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H A Ddbigcg.c706 static ajint gcglen; in dbigcg_gcggetent() local
774 ajStrToInt(tmpstr, &gcglen); in dbigcg_gcggetent()
777 *libstr, gcgtype, tmpstr, gcglen); in dbigcg_gcggetent()
810 rblock = (gcglen+3)/4; in dbigcg_gcggetent()
813 else ajFileSeek(libs,gcglen+1,SEEK_CUR); in dbigcg_gcggetent()
824 gcglen += dbigcg_gcgappent(libr, libs, in dbigcg_gcggetent()
834 return gcglen; in dbigcg_gcggetent()
868 ajint gcglen; in dbigcg_pirgetent() local
935 gcglen = 0; in dbigcg_pirgetent()
946 gcglen += ajStrGetLen(sline); in dbigcg_pirgetent()
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/dports/biology/emboss/EMBOSS-6.6.0/ajax/ajaxdb/
H A Dajfeatdb.c1651 ajint gcglen; in featGcgReadSeq() local
1701 ajStrToInt(tmpstr, &gcglen); in featGcgReadSeq()
1744 ajStrSetRes(&contseq, gcglen+3); in featGcgReadSeq()
1745 rblock = gcglen; in featGcgReadSeq()
1789 ajStrToInt(tmpstr, &gcglen); in featGcgReadSeq()
1796 rblock = gcglen; in featGcgReadSeq()
2873 ajint gcglen; in featEmbossGcgReadSeq() local
2924 ajStrToInt(tmpstr, &gcglen); in featEmbossGcgReadSeq()
2967 ajStrSetRes(&contseq, gcglen+3); in featEmbossGcgReadSeq()
2968 rblock = gcglen; in featEmbossGcgReadSeq()
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H A Dajseqdb.c2656 ajint gcglen; in seqEmbossGcgReadSeq() local
2707 ajStrToInt(tmpstr, &gcglen); in seqEmbossGcgReadSeq()
2750 ajStrSetRes(&seqin->Inseq, gcglen+3); in seqEmbossGcgReadSeq()
2751 rblock = gcglen; in seqEmbossGcgReadSeq()
2794 ajStrToInt(tmpstr, &gcglen); in seqEmbossGcgReadSeq()
2801 rblock = gcglen; in seqEmbossGcgReadSeq()
3962 ajint gcglen; in seqGcgReadSeq() local
4013 ajStrToInt(tmpstr, &gcglen); in seqGcgReadSeq()
4057 rblock = gcglen; in seqGcgReadSeq()
4100 ajStrToInt(tmpstr, &gcglen); in seqGcgReadSeq()
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/dports/biology/seqio/seqio-1.2.2/
H A Dseqio.c4854 int status, gcglen, msfflag; in raw_read() local
4924 gcglen = msfflag = 0; in raw_read()
4926 if (gcglen == 0 && mystreq(t, 'M', "MSF: ")) { in raw_read()
4927 gcglen = myatoi(t + 4, 10, '0'); in raw_read()
4930 else if (gcglen == 0 && mystreq(t, 'L', "LENGTH: ")) { in raw_read()
4931 gcglen = myatoi(t + 8, 10, '0'); in raw_read()
4942 if (gcglen > 0) { in raw_read()
4943 isfp->entry_rawlen = isfp->entry_seqlen = gcglen; in raw_read()