Searched refs:gcglen (Results 1 – 5 of 5) sorted by relevance
/dports/biology/emboss/EMBOSS-6.6.0/emboss/ |
H A D | dbxgcg.c | 530 ajlong gcglen = 0; in dbxgcg_gcggetent() local 592 ajStrToLong(dbxgcgTmpstr, &gcglen); in dbxgcg_gcggetent() 595 entry->id, dbxgcgGcgdate, dbxgcgGcgtype, dbxgcgTmpstr, gcglen); in dbxgcg_gcggetent() 625 rblock = (gcglen+3)/4; in dbxgcg_gcggetent() 629 ajFileSeek(infs,gcglen+1,SEEK_CUR); in dbxgcg_gcggetent() 642 return gcglen; in dbxgcg_gcggetent() 647 return gcglen; in dbxgcg_gcggetent() 671 ajlong gcglen; in dbxgcg_pirgetent() local 734 gcglen = 0; in dbxgcg_pirgetent() 745 gcglen += ajStrGetLen(dbxgcgSeqline); in dbxgcg_pirgetent() [all …]
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H A D | dbigcg.c | 706 static ajint gcglen; in dbigcg_gcggetent() local 774 ajStrToInt(tmpstr, &gcglen); in dbigcg_gcggetent() 777 *libstr, gcgtype, tmpstr, gcglen); in dbigcg_gcggetent() 810 rblock = (gcglen+3)/4; in dbigcg_gcggetent() 813 else ajFileSeek(libs,gcglen+1,SEEK_CUR); in dbigcg_gcggetent() 824 gcglen += dbigcg_gcgappent(libr, libs, in dbigcg_gcggetent() 834 return gcglen; in dbigcg_gcggetent() 868 ajint gcglen; in dbigcg_pirgetent() local 935 gcglen = 0; in dbigcg_pirgetent() 946 gcglen += ajStrGetLen(sline); in dbigcg_pirgetent() [all …]
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/dports/biology/emboss/EMBOSS-6.6.0/ajax/ajaxdb/ |
H A D | ajfeatdb.c | 1651 ajint gcglen; in featGcgReadSeq() local 1701 ajStrToInt(tmpstr, &gcglen); in featGcgReadSeq() 1744 ajStrSetRes(&contseq, gcglen+3); in featGcgReadSeq() 1745 rblock = gcglen; in featGcgReadSeq() 1789 ajStrToInt(tmpstr, &gcglen); in featGcgReadSeq() 1796 rblock = gcglen; in featGcgReadSeq() 2873 ajint gcglen; in featEmbossGcgReadSeq() local 2924 ajStrToInt(tmpstr, &gcglen); in featEmbossGcgReadSeq() 2967 ajStrSetRes(&contseq, gcglen+3); in featEmbossGcgReadSeq() 2968 rblock = gcglen; in featEmbossGcgReadSeq() [all …]
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H A D | ajseqdb.c | 2656 ajint gcglen; in seqEmbossGcgReadSeq() local 2707 ajStrToInt(tmpstr, &gcglen); in seqEmbossGcgReadSeq() 2750 ajStrSetRes(&seqin->Inseq, gcglen+3); in seqEmbossGcgReadSeq() 2751 rblock = gcglen; in seqEmbossGcgReadSeq() 2794 ajStrToInt(tmpstr, &gcglen); in seqEmbossGcgReadSeq() 2801 rblock = gcglen; in seqEmbossGcgReadSeq() 3962 ajint gcglen; in seqGcgReadSeq() local 4013 ajStrToInt(tmpstr, &gcglen); in seqGcgReadSeq() 4057 rblock = gcglen; in seqGcgReadSeq() 4100 ajStrToInt(tmpstr, &gcglen); in seqGcgReadSeq() [all …]
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/dports/biology/seqio/seqio-1.2.2/ |
H A D | seqio.c | 4854 int status, gcglen, msfflag; in raw_read() local 4924 gcglen = msfflag = 0; in raw_read() 4926 if (gcglen == 0 && mystreq(t, 'M', "MSF: ")) { in raw_read() 4927 gcglen = myatoi(t + 4, 10, '0'); in raw_read() 4930 else if (gcglen == 0 && mystreq(t, 'L', "LENGTH: ")) { in raw_read() 4931 gcglen = myatoi(t + 8, 10, '0'); in raw_read() 4942 if (gcglen > 0) { in raw_read() 4943 isfp->entry_rawlen = isfp->entry_seqlen = gcglen; in raw_read()
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