Home
last modified time | relevance | path

Searched refs:gcoords (Results 1 – 21 of 21) sorted by relevance

/dports/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/pdb2pqr/extensions/
H A Dchi.py57 gcoords = residue.getAtom("CG").getCoords()
59 gcoords = residue.getAtom("OG").getCoords()
61 gcoords = residue.getAtom("SG").getCoords()
65 chi = getDihedral(ncoords, cacoords, cbcoords, gcoords)
/dports/science/PETSc/petsc-3.14.1/src/dm/tests/
H A Dex32.c26 Vec coords,gcoords,gcoords2; in TestQ2Q1DA() local
43 ierr = DMGetCoordinatesLocal(Q1_da,&gcoords);CHKERRQ(ierr); in TestQ2Q1DA()
52 ierr = CompareGhostedCoords(gcoords,gcoords2);CHKERRQ(ierr); in TestQ2Q1DA()
56 ierr = VecScale(gcoords,10.0);CHKERRQ(ierr); in TestQ2Q1DA()
58 ierr = CompareGhostedCoords(gcoords,gcoords2);CHKERRQ(ierr); in TestQ2Q1DA()
/dports/science/PETSc/petsc-3.14.1/src/dm/impls/plex/
H A Dplexegads.c40 …orCode DMPlexSnapToGeomModel(DM dm, PetscInt p, const PetscScalar mcoords[], PetscScalar gcoords[]) in DMPlexSnapToGeomModel() argument
66 for (d = 0; d < dE; ++d) gcoords[d] = mcoords[d]; in DMPlexSnapToGeomModel()
88 for (d = 0; d < dE; ++d) gcoords[d] = mcoords[d]; in DMPlexSnapToGeomModel()
108 for (d = 0; d < dE; ++d) gcoords[d] = result[d]; in DMPlexSnapToGeomModel()
110 for (d = 0; d < dE; ++d) gcoords[d] = mcoords[d]; in DMPlexSnapToGeomModel()
H A Dplexfem.c1221 PetscReal *coords, *gcoords; in DMPlexComputeL2DiffLocal() local
1295 gcoords = &coords[coordDim*Nq]; in DMPlexComputeL2DiffLocal()
1298 gcoords = &coords[coordDim*q]; in DMPlexComputeL2DiffLocal()
1300 ierr = (*funcs[field])(coordDim, time, gcoords, Nc, funcVal, ctx); in DMPlexComputeL2DiffLocal()
1341 PetscReal *coords, *gcoords; in DMComputeL2GradientDiff_Plex() local
1403 gcoords = &coords[coordDim*Nq]; in DMComputeL2GradientDiff_Plex()
1406 gcoords = &coords[coordDim*q]; in DMComputeL2GradientDiff_Plex()
1485 PetscReal *coords, *gcoords; in DMComputeL2FieldDiff_Plex() local
1548 gcoords = &coords[dE*Nq]; in DMComputeL2FieldDiff_Plex()
1551 gcoords = &coords[dE*q]; in DMComputeL2FieldDiff_Plex()
[all …]
/dports/science/PETSc/petsc-3.14.1/src/dm/impls/plex/ftn-auto/
H A Dplexegadsf.c42 …dmplexsnaptogeommodel_(DM dm,PetscInt *p, PetscScalar mcoords[],PetscScalar gcoords[], int *__ierr) in dmplexsnaptogeommodel_() argument
45 (DM)PetscToPointer((dm) ),*p,mcoords,gcoords); in dmplexsnaptogeommodel_()
/dports/math/ggobi/ggobi-2.1.11/src/
H A Dmovepts.c106 movept_screen_to_raw (splotd * sp, gint ipt, gcoords * eps, in movept_screen_to_raw()
110 gcoords planar; in movept_screen_to_raw()
140 movept_plane_to_raw (splotd * sp, gint ipt, gcoords * eps, GGobiData * d, in movept_plane_to_raw()
144 gcoords planar; in movept_plane_to_raw()
H A Dsplot.h72 gcoords *planar;
79 gcoords iscale;
80 gcoords pmid; /*-- center of the screen in planar/world coords --*/
H A Dlineedit.c465 gcoords * eps, gcoords * planar, splotd * sp) in pt_screen_to_plane()
467 gcoords prev_planar; in pt_screen_to_plane()
508 pt_plane_to_world (splotd * sp, gcoords * planar, gcoords * eps, in pt_plane_to_world()
588 greal * raw, gcoords * eps, GGobiData * d, splotd * sp, in pt_screen_to_raw()
592 gcoords planar; in pt_screen_to_raw()
609 gcoords eps; in fetch_default_record_values()
H A Dsplot.c366 sp->planar = (gcoords *) g_realloc (sp->planar, in splot_points_realloc()
367 d->nrows * sizeof (gcoords)); in splot_points_realloc()
405 sp->planar = (gcoords *) g_malloc (nr * sizeof (gcoords)); in splot_alloc()
740 splot_screen_to_plane (splotd *sp, gint pt, gcoords *eps, in splot_screen_to_plane()
743 gcoords prev_planar; in splot_screen_to_plane()
H A Dtypes.h62 } gcoords; typedef
250 gcoords planar;
H A Dggobi.h416 gcoords eps;
H A Dexterns.h50 …o_plane (icoords *screen, gint id, gboolean horiz, gboolean vert, gcoords *eps, gcoords *planar, s…
51 void pt_plane_to_world (splotd *sp, gcoords *planar, gcoords *eps, greal *world);
H A DtsPlot.c185 gcoords planar, world; in splotScreenToTform()
H A DscatmatClass.c433 gcoords planar, world; in splotScreenToTform()
H A DbarchartClass.c423 gcoords planar, world; in barchartScreenToTform()
H A DparcoordsClass.c543 gcoords planar, world; in splotScreenToTform()
H A DscatterplotClass.c1542 gcoords planar, world; in splotScreenToTform()
/dports/science/PETSc/petsc-3.14.1/src/mat/tests/
H A Dex66.c102 PetscReal *gcoords; in main() local
114 ierr = PetscMalloc1(dim*N,&gcoords);CHKERRQ(ierr); in main()
115 ierr = PetscSFBcastBegin(sf,dtype,coords,gcoords);CHKERRQ(ierr); in main()
116 ierr = PetscSFBcastEnd(sf,dtype,coords,gcoords);CHKERRQ(ierr); in main()
119 } else gcoords = (PetscReal*)coords; in main()
124 …ierr = MatSetValue(A,i,j,(*k)(dim,gcoords + i*dim,gcoords + j*dim,NULL),INSERT_VALUES);CHKERRQ(ier… in main()
134 if (gcoords != coords) { ierr = PetscFree(gcoords);CHKERRQ(ierr); } in main()
/dports/science/PETSc/petsc-3.14.1/src/mat/impls/hara/
H A Dmathara.cu1130 PetscReal *gcoords; in MatHaraSetCoords_HARA() local
1154 ierr = PetscMalloc1(spacedim*N,&gcoords);CHKERRQ(ierr); in MatHaraSetCoords_HARA()
1155 ierr = PetscSFBcastBegin(sf,dtype,coords,gcoords);CHKERRQ(ierr); in MatHaraSetCoords_HARA()
1156 ierr = PetscSFBcastEnd(sf,dtype,coords,gcoords);CHKERRQ(ierr); in MatHaraSetCoords_HARA()
1159 } else gcoords = (PetscReal*)coords; in MatHaraSetCoords_HARA()
1170 hara->ptcloud1 = new PetscPointCloud1D<PetscReal>(N,gcoords); in MatHaraSetCoords_HARA()
1174 hara->ptcloud2 = new PetscPointCloud2D<PetscReal>(N,gcoords); in MatHaraSetCoords_HARA()
1178 hara->ptcloud3 = new PetscPointCloud3D<PetscReal>(N,gcoords); in MatHaraSetCoords_HARA()
1184 if (gcoords != coords) { ierr = PetscFree(gcoords);CHKERRQ(ierr); } in MatHaraSetCoords_HARA()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/gnomon/
H A Dgnomon_model.hpp225 …Info(bool gcoords = true): m_confirmed_start(false), m_confirmed_stop(false), m_open(false), m_sco… in CCDSInfo() argument
/dports/science/PETSc/petsc-3.14.1/
H A DCTAGS5848 …pToGeomModel(DM dm, PetscInt p, const PetscScalar mcoords[], PetscScalar gcoords[])$/;" f language…