Searched refs:gene_map (Results 1 – 3 of 3) sorted by relevance
| /dports/biology/py-resdk/resdk-13.8.0/tests/unit/ |
| H A D | test_tables.py | 70 self.gene_map = {"ENSG001": "GA", "ENSG002": "GB", "ENSG003": "GC"}
197 mapping_mock.side_effect = self.web_request(self.gene_map)
211 self.assertIs(mapping, self.gene_map)
221 self.assertIs(mapping, self.gene_map)
409 download_mock.return_value = self.gene_map
415 self.assertDictEqual(mapping, self.gene_map)
420 self.gene_map, "/tmp/resdk/ENSEMBL_Homo sapiens.pickle", override=True
429 self.assertDictEqual(mapping, self.gene_map)
440 create_feature(fid, name) for fid, name in self.gene_map.items()
454 self.assertDictEqual(mapping, self.gene_map)
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/gnomon/ |
| H A D | parse.cpp | 649 CAlignMap gene_map = gene.GetAlignMap(); in GetGenes() local
651 …int utr_len = gene_map.FShiftedLen(TSignedSeqRange(gene.Limits().GetFrom(),reading_frame.GetFrom()… in GetGenes()
655 gene_map = gene.GetAlignMap(); in GetGenes()
658 TSignedSeqRange rf = gene_map.MapRangeOrigToEdited(reading_frame, true); in GetGenes()
663 start = gene_map.MapRangeEditedToOrig(stt, false); in GetGenes()
668 …int utr_len = gene_map.FShiftedLen(TSignedSeqRange(reading_frame.GetTo(),gene.Limits().GetTo()), C… in GetGenes()
672 gene_map = gene.GetAlignMap(); in GetGenes()
675 TSignedSeqRange rf = gene_map.MapRangeOrigToEdited(reading_frame, true); in GetGenes()
680 stop = gene_map.MapRangeEditedToOrig(stp, false); in GetGenes()
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| /dports/biology/py-orange3-bioinformatics/Orange3-Bioinformatics-4.3.1/orangecontrib/bioinformatics/ncbi/gene/ |
| H A D | __init__.py | 350 gene_map: Dict[str, Gene] = {}
354 gene_map[gene.gene_id] = gene
356 return [gene_map.get(gid, None) if gid else None for gid in genes]
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