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Searched refs:genename (Results 1 – 18 of 18) sorted by relevance

/dports/biology/gmap/gmap-2020-09-12/util/
H A Densembl_genes.pl.in28 $genename = $fields[10];
36 print "$genename\n";
44 print "$genename\n";
/dports/devel/p5-Algorithm-Cluster/Algorithm-Cluster-1.59/perl/
H A DRecord.pm12 $self->{genename} = undef;
38 $self->{genename} = ();
83 push(@{$self->{genename}}, $word);
489 my @genename;
490 if (defined $self->{genename}) {
491 @genename = @{$self->{genename}};
494 @genename = @{$self->{geneid}};
557 print OUTPUT $self->{geneid}[$i] . "\t" . $genename[$i] . "\t" . $gweight[$i];
/dports/biology/py-biopython/biopython-1.79/Bio/Cluster/
H A D__init__.py663 self.genename = None
680 self.genename = []
716 self.genename.append(word)
1142 if self.genename is None:
1143 genename = self.geneid
1145 genename = self.genename
1187 "%s\t%s\t%f" % (self.geneid[i], genename[i], gweight[i])
/dports/biology/p5-BioPerl/BioPerl-1.7.7/lib/Bio/SeqIO/
H A Dswiss.pm261 my $genename = "";
313 $genename .= " " if $genename;
314 $genename .= $1;
414 if ($genename) {
416 if ($genename =~ /\w=\w/) {
418 for my $n (split(m{\s+and\s+},$genename)) {
431 for my $section (split(/ AND /, $genename)) {
/dports/biology/p5-BioPerl/BioPerl-1.7.7/lib/Bio/SeqIO/Handler/
H A DGenericRichSeqHandler.pm678 my $genename = $data->{DATA};
680 if ($genename) {
682 if ($genename =~ /\w=\w/) {
684 for my $n (split(m{\s+and\s+},$genename)) {
697 for my $section (split(/ AND /, $genename)) {
/dports/biology/mummer/mummer-4.0.0beta2-2-g277dac5/scripts/
H A Dmapview.pl339 $genename=$a[8];
340 if ($genename ne $tmpname){
343 $tmpname=$genename;
396 $genename=$a[8];
401 if ($genename ne $tmpname){
410 $tmpname=$genename;
/dports/biology/stringtie/stringtie-2.1.1/
H A Dtablemaker.cpp264 const char* genename= sd.ref_t->getGeneName(); in rc_writeRC() local
266 if (genename==NULL) genename="."; in rc_writeRC()
272 genename, sd.cov, sd.fpkm); in rc_writeRC()
/dports/biology/py-ete3/ete3-3.1.2/ete3/tools/ete_build_lib/
H A Dvisualize.py76 … geneF = TextFace(" (%s)" %node.genename, fsize=8, fgcolor='#777777', ftype='Helvetica')
201 lf.add_features(genename=re.sub('\{[^}]+\}', '', lf.name).strip())
/dports/biology/ncbi-toolkit/ncbi/tools/
H A Durkcnsrt.c545 CharPtr PNTR genename; member
632 sprintf (gcdsp->genename[gcdsp->genecurrent], in getgene1cdn()
637 StrCpy (gcdsp->genename[gcdsp->genecurrent], buf); in getgene1cdn()
795 gcdsp->genename = MemNew ((size_t) (CONMATSIZE * sizeof (Pointer))); in ConsortSeqEntry()
797 gcdsp->genename[i] = MemNew (64 * sizeof (Char)); in ConsortSeqEntry()
840 gcdsp->genename); in ConsortSeqEntry()
843 MemFree (gcdsp->genename[i]); in ConsortSeqEntry()
844 MemFree (gcdsp->genename); in ConsortSeqEntry()
/dports/biology/p5-BioPerl/BioPerl-1.7.7/t/Annotation/
H A DAnnotation.t264 ['genename' => [
269 ['genename'=> [
273 [ 'genename'=> [
309 is($node->element, 'genename');
/dports/biology/ncbi-entrez-direct/ncbi-entrez-direct-14.9.20210423/
H A Ddownload-ncbi-data71 xtract -pattern Rec -element Code Name > genename.txt
/dports/biology/ncbi-toolkit/ncbi/sequin/
H A Dsequin3.c15327 CharPtr genename = NULL; in CorrectOneCDSGenePair() local
15375 if (genename == NULL) in CorrectOneCDSGenePair()
15382 fprintf (cgp->fp, "Gene %s", genename); in CorrectOneCDSGenePair()
15418 if (genename == NULL) in CorrectOneCDSGenePair()
15803 CharPtr genename; in ResetAllGenes() local
15869 if (genename == NULL) in ResetAllGenes()
15876 fprintf (fp, "Gene %s", genename); in ResetAllGenes()
16009 CharPtr genename; in LogExtend() local
16022 genename = GetGeneName (grp); in LogExtend()
16023 if (genename != NULL) in LogExtend()
[all …]
H A Dsequin7.c5747 TexT genename; member
6221 esp->genestr = SaveStringFromText (esp->genename); in DoEditSeqEndsProc()
6433 esp->genename = DialogText (q, "", 14, NULL); in EditSeqEndsProc()
H A Dsequin8.c12392 CharPtr genename; member
/dports/biology/py-biopython/biopython-1.79/Doc/Tutorial/
H A Dchapter_cluster.tex765 \item \verb|genename| \\
766 …for each gene (i.e., gene name). If not present in the data file, \verb|genename| is set to \verb|…
H A Dchapter_entrez.tex628 ... genename = record["Entrezgene_gene"]["Gene-ref"]["Gene-ref_locus"]
629 ... print(geneid, genename)
/dports/biology/artemis/artemis-17.0.1-11-g3e43d27e/docs/
H A Dmenus.sgml683 the genename CDC will find CDC1, CDC2, ABCDC etc. If the toggle is off &prog;
/dports/biology/emboss/EMBOSS-6.6.0/test/swiss/
H A Dseq.dat8357 CC URL="http://shmpd.bii.a-star.edu.sg/gene.php?genestart=A&genename=HBA1";
10616 CC URL="http://shmpd.bii.a-star.edu.sg/gene.php?genestart=A&genename=HBB";