/dports/biology/gmap/gmap-2020-09-12/util/ |
H A D | ensembl_genes.pl.in | 28 $genename = $fields[10]; 36 print "$genename\n"; 44 print "$genename\n";
|
/dports/devel/p5-Algorithm-Cluster/Algorithm-Cluster-1.59/perl/ |
H A D | Record.pm | 12 $self->{genename} = undef; 38 $self->{genename} = (); 83 push(@{$self->{genename}}, $word); 489 my @genename; 490 if (defined $self->{genename}) { 491 @genename = @{$self->{genename}}; 494 @genename = @{$self->{geneid}}; 557 print OUTPUT $self->{geneid}[$i] . "\t" . $genename[$i] . "\t" . $gweight[$i];
|
/dports/biology/py-biopython/biopython-1.79/Bio/Cluster/ |
H A D | __init__.py | 663 self.genename = None 680 self.genename = [] 716 self.genename.append(word) 1142 if self.genename is None: 1143 genename = self.geneid 1145 genename = self.genename 1187 "%s\t%s\t%f" % (self.geneid[i], genename[i], gweight[i])
|
/dports/biology/p5-BioPerl/BioPerl-1.7.7/lib/Bio/SeqIO/ |
H A D | swiss.pm | 261 my $genename = ""; 313 $genename .= " " if $genename; 314 $genename .= $1; 414 if ($genename) { 416 if ($genename =~ /\w=\w/) { 418 for my $n (split(m{\s+and\s+},$genename)) { 431 for my $section (split(/ AND /, $genename)) {
|
/dports/biology/p5-BioPerl/BioPerl-1.7.7/lib/Bio/SeqIO/Handler/ |
H A D | GenericRichSeqHandler.pm | 678 my $genename = $data->{DATA}; 680 if ($genename) { 682 if ($genename =~ /\w=\w/) { 684 for my $n (split(m{\s+and\s+},$genename)) { 697 for my $section (split(/ AND /, $genename)) {
|
/dports/biology/mummer/mummer-4.0.0beta2-2-g277dac5/scripts/ |
H A D | mapview.pl | 339 $genename=$a[8]; 340 if ($genename ne $tmpname){ 343 $tmpname=$genename; 396 $genename=$a[8]; 401 if ($genename ne $tmpname){ 410 $tmpname=$genename;
|
/dports/biology/stringtie/stringtie-2.1.1/ |
H A D | tablemaker.cpp | 264 const char* genename= sd.ref_t->getGeneName(); in rc_writeRC() local 266 if (genename==NULL) genename="."; in rc_writeRC() 272 genename, sd.cov, sd.fpkm); in rc_writeRC()
|
/dports/biology/py-ete3/ete3-3.1.2/ete3/tools/ete_build_lib/ |
H A D | visualize.py | 76 … geneF = TextFace(" (%s)" %node.genename, fsize=8, fgcolor='#777777', ftype='Helvetica') 201 lf.add_features(genename=re.sub('\{[^}]+\}', '', lf.name).strip())
|
/dports/biology/ncbi-toolkit/ncbi/tools/ |
H A D | urkcnsrt.c | 545 CharPtr PNTR genename; member 632 sprintf (gcdsp->genename[gcdsp->genecurrent], in getgene1cdn() 637 StrCpy (gcdsp->genename[gcdsp->genecurrent], buf); in getgene1cdn() 795 gcdsp->genename = MemNew ((size_t) (CONMATSIZE * sizeof (Pointer))); in ConsortSeqEntry() 797 gcdsp->genename[i] = MemNew (64 * sizeof (Char)); in ConsortSeqEntry() 840 gcdsp->genename); in ConsortSeqEntry() 843 MemFree (gcdsp->genename[i]); in ConsortSeqEntry() 844 MemFree (gcdsp->genename); in ConsortSeqEntry()
|
/dports/biology/p5-BioPerl/BioPerl-1.7.7/t/Annotation/ |
H A D | Annotation.t | 264 ['genename' => [ 269 ['genename'=> [ 273 [ 'genename'=> [ 309 is($node->element, 'genename');
|
/dports/biology/ncbi-entrez-direct/ncbi-entrez-direct-14.9.20210423/ |
H A D | download-ncbi-data | 71 xtract -pattern Rec -element Code Name > genename.txt
|
/dports/biology/ncbi-toolkit/ncbi/sequin/ |
H A D | sequin3.c | 15327 CharPtr genename = NULL; in CorrectOneCDSGenePair() local 15375 if (genename == NULL) in CorrectOneCDSGenePair() 15382 fprintf (cgp->fp, "Gene %s", genename); in CorrectOneCDSGenePair() 15418 if (genename == NULL) in CorrectOneCDSGenePair() 15803 CharPtr genename; in ResetAllGenes() local 15869 if (genename == NULL) in ResetAllGenes() 15876 fprintf (fp, "Gene %s", genename); in ResetAllGenes() 16009 CharPtr genename; in LogExtend() local 16022 genename = GetGeneName (grp); in LogExtend() 16023 if (genename != NULL) in LogExtend() [all …]
|
H A D | sequin7.c | 5747 TexT genename; member 6221 esp->genestr = SaveStringFromText (esp->genename); in DoEditSeqEndsProc() 6433 esp->genename = DialogText (q, "", 14, NULL); in EditSeqEndsProc()
|
H A D | sequin8.c | 12392 CharPtr genename; member
|
/dports/biology/py-biopython/biopython-1.79/Doc/Tutorial/ |
H A D | chapter_cluster.tex | 765 \item \verb|genename| \\ 766 …for each gene (i.e., gene name). If not present in the data file, \verb|genename| is set to \verb|…
|
H A D | chapter_entrez.tex | 628 ... genename = record["Entrezgene_gene"]["Gene-ref"]["Gene-ref_locus"] 629 ... print(geneid, genename)
|
/dports/biology/artemis/artemis-17.0.1-11-g3e43d27e/docs/ |
H A D | menus.sgml | 683 the genename CDC will find CDC1, CDC2, ABCDC etc. If the toggle is off &prog;
|
/dports/biology/emboss/EMBOSS-6.6.0/test/swiss/ |
H A D | seq.dat | 8357 CC URL="http://shmpd.bii.a-star.edu.sg/gene.php?genestart=A&genename=HBA1"; 10616 CC URL="http://shmpd.bii.a-star.edu.sg/gene.php?genestart=A&genename=HBB";
|