Searched refs:geno_ssq (Results 1 – 3 of 3) sorted by relevance
/dports/biology/plink/plink-ng-79b2df8c/1.9/ |
H A D | plink_family.c | 5110 double geno_ssq = 0.0; in flip_precalc() local 5126 geno_ssq += cur_geno * cur_geno; in flip_precalc() 5131 *geno_ssq_ptr = geno_ssq; in flip_precalc() 5183 geno_ssq += cur_geno * cur_geno; in qfam_regress() 5192 geno_var = (geno_ssq - geno_sum * geno_mean) * dxx; in qfam_regress() 5247 double geno_ssq = 0.0; in qfam_thread() local 5311 flip_precalc(lm_ct, qfam_w, pheno_d2, nm_lm, &geno_sum, &geno_ssq, &qt_g_prod); in qfam_thread() 5345 …r, &(qfam_flip[pidx * flip_ctl]), nind_recip, qt_sum, qt_ssq, geno_sum, geno_ssq, qt_g_prod, &beta… in qfam_thread() 5406 double geno_ssq = 0.0; in qfam() local 5799 flip_precalc(lm_ct, qfam_w, pheno_d2, nm_lm, &geno_sum, &geno_ssq, &qt_g_prod); in qfam() [all …]
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H A D | plink_assoc.c | 2885 intptr_t geno_ssq; in qassoc_adapt_thread() local 2962 geno_ssq = 4 * homrar_ct + het_ct; in qassoc_adapt_thread() 2966 geno_var = (((double)geno_ssq) - geno_sum * geno_mean) * nanal_m1_recip; in qassoc_adapt_thread() 3247 intptr_t geno_ssq; in qassoc_maxt_thread() local 3326 geno_ssq = 4 * homrar_ct + het_ct; in qassoc_maxt_thread() 3331 geno_var = (((double)geno_ssq) - geno_sum * geno_mean) * nanal_m1_recip; in qassoc_maxt_thread() 3622 intptr_t geno_ssq; in qassoc_set_thread() local 3670 geno_ssq = 4 * homrar_ct + het_ct; in qassoc_set_thread() 8157 intptr_t geno_ssq; in qassoc() local 8544 geno_ssq = 4 * homrar_ct + het_ct; in qassoc() [all …]
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/dports/biology/plink/plink-ng-79b2df8c/2.0/ |
H A D | plink2_glm.cc | 7372 const double geno_ssq = xtx_inv[1 + cur_predictor_ct]; in GlmLinearThread() local 7375 …dotprod_inv, &(xtx_inv[1 + cur_predictor_ct]), cur_predictor_ct - 1, 1, geno_ssq, dbl_2d_buf, inve… in GlmLinearThread() 7384 …_inv[2 + cur_predictor_ct]), cur_predictor_ct - 2, cur_predictor_ct, 1, geno_ssq, domdev_geno_prod… in GlmLinearThread() 9453 const double geno_ssq = xtx_inv[1 + cur_predictor_ct]; in GlmLinearSubbatchThread() local 9456 …dotprod_inv, &(xtx_inv[1 + cur_predictor_ct]), cur_predictor_ct - 1, 1, geno_ssq, dbl_2d_buf, inve… in GlmLinearSubbatchThread() 9465 …_inv[2 + cur_predictor_ct]), cur_predictor_ct - 2, cur_predictor_ct, 1, geno_ssq, domdev_geno_prod… in GlmLinearSubbatchThread()
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