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Searched refs:geno_ssq (Results 1 – 3 of 3) sorted by relevance

/dports/biology/plink/plink-ng-79b2df8c/1.9/
H A Dplink_family.c5110 double geno_ssq = 0.0; in flip_precalc() local
5126 geno_ssq += cur_geno * cur_geno; in flip_precalc()
5131 *geno_ssq_ptr = geno_ssq; in flip_precalc()
5183 geno_ssq += cur_geno * cur_geno; in qfam_regress()
5192 geno_var = (geno_ssq - geno_sum * geno_mean) * dxx; in qfam_regress()
5247 double geno_ssq = 0.0; in qfam_thread() local
5311 flip_precalc(lm_ct, qfam_w, pheno_d2, nm_lm, &geno_sum, &geno_ssq, &qt_g_prod); in qfam_thread()
5345 …r, &(qfam_flip[pidx * flip_ctl]), nind_recip, qt_sum, qt_ssq, geno_sum, geno_ssq, qt_g_prod, &beta… in qfam_thread()
5406 double geno_ssq = 0.0; in qfam() local
5799 flip_precalc(lm_ct, qfam_w, pheno_d2, nm_lm, &geno_sum, &geno_ssq, &qt_g_prod); in qfam()
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H A Dplink_assoc.c2885 intptr_t geno_ssq; in qassoc_adapt_thread() local
2962 geno_ssq = 4 * homrar_ct + het_ct; in qassoc_adapt_thread()
2966 geno_var = (((double)geno_ssq) - geno_sum * geno_mean) * nanal_m1_recip; in qassoc_adapt_thread()
3247 intptr_t geno_ssq; in qassoc_maxt_thread() local
3326 geno_ssq = 4 * homrar_ct + het_ct; in qassoc_maxt_thread()
3331 geno_var = (((double)geno_ssq) - geno_sum * geno_mean) * nanal_m1_recip; in qassoc_maxt_thread()
3622 intptr_t geno_ssq; in qassoc_set_thread() local
3670 geno_ssq = 4 * homrar_ct + het_ct; in qassoc_set_thread()
8157 intptr_t geno_ssq; in qassoc() local
8544 geno_ssq = 4 * homrar_ct + het_ct; in qassoc()
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/dports/biology/plink/plink-ng-79b2df8c/2.0/
H A Dplink2_glm.cc7372 const double geno_ssq = xtx_inv[1 + cur_predictor_ct]; in GlmLinearThread() local
7375 …dotprod_inv, &(xtx_inv[1 + cur_predictor_ct]), cur_predictor_ct - 1, 1, geno_ssq, dbl_2d_buf, inve… in GlmLinearThread()
7384 …_inv[2 + cur_predictor_ct]), cur_predictor_ct - 2, cur_predictor_ct, 1, geno_ssq, domdev_geno_prod… in GlmLinearThread()
9453 const double geno_ssq = xtx_inv[1 + cur_predictor_ct]; in GlmLinearSubbatchThread() local
9456 …dotprod_inv, &(xtx_inv[1 + cur_predictor_ct]), cur_predictor_ct - 1, 1, geno_ssq, dbl_2d_buf, inve… in GlmLinearSubbatchThread()
9465 …_inv[2 + cur_predictor_ct]), cur_predictor_ct - 2, cur_predictor_ct, 1, geno_ssq, domdev_geno_prod… in GlmLinearSubbatchThread()