/dports/biology/py-hits/hits-0.1/hits/ |
H A D | genomes.py | 53 genome_index = get_genome_index(genome_dir) 61 fasta_file_name = genome_index[rname].file_name 78 genome_index = get_genome_index(genome_dir) 86 seq_name: fasta_files[genome_index[seq_name].file_name] 87 for seq_name in genome_index 131 def max_RNAME_length(genome_index): argument 132 length = max(len(name) for name in genome_index) 135 def max_POS_length(genome_index): argument 136 length = max(len(str(genome_index[name].length)) for name in genome_index) 139 def max_tid_length(genome_index): argument [all …]
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H A D | variants.py | 504 genome_index = genomes.get_genome_index(genome_dir) 512 end = genome_index[rname].length - 1
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/dports/biology/bowtie/bowtie-1.3.1/scripts/test/ |
H A D | large_idx.py | 27 genome_index = os.path.join(wdir,'human') 31 args = " %s -f %s" % (genome_index,reads) 42 genome_index = os.path.join(wdir,'mouse') 46 args = " %s -f %s" % (genome_index,reads) 57 genome_index = os.path.join(wdir,'ms_hum') 62 args = " %s -f %s" % (genome_index,reads_human) 64 args = " %s -f %s" % (genome_index,reads_mouse)
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/dports/biology/bowtie2/bowtie2-2.4.4/scripts/test/ |
H A D | large_idx.py | 27 genome_index = os.path.join(wdir,'human') 31 args = "-x %s -f -U %s" % (genome_index,reads) 42 genome_index = os.path.join(wdir,'mouse') 46 args = "-x %s -f -U %s" % (genome_index,reads) 57 genome_index = os.path.join(wdir,'ms_hum') 62 args = "-x %s -f -U %s" % (genome_index,reads_human) 64 args = "-x %s -f -U %s" % (genome_index,reads_mouse)
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/dports/biology/py-resdk/resdk-13.8.0/tests/functional/docs/ |
H A D | e2e_docs.py | 113 genome_index = res.run( 120 self.set_slug(genome_index, slug) 122 return genome_index 153 self.genome_index = self.create_genome_index( 197 self.genome_index = self.create_genome_index(
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/dports/biology/py-resdk/resdk-13.8.0/docs/files/ |
H A D | start.py | 18 genome_index = res.data.get('resdk-example-genome-index') variable 34 'genome': genome_index.id,
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H A D | tutorial-create.py | 68 genome_index = res.data.get('resdk-example-genome-index') variable 73 'genome': genome_index,
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/dports/graphics/flam3/flam3-3.1.1-5-g7fb50c8/ |
H A D | flam3-genome.c | 157 sprintf(buffer,"%d",parent0->genome_index); in create_new_editdoc() 164 sprintf(buffer,"%d",parent0->genome_index); in create_new_editdoc() 177 sprintf(buffer,"%d",parent1->genome_index); in create_new_editdoc() 184 sprintf(buffer,"%d",parent1->genome_index); in create_new_editdoc()
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H A D | flam3.h | 466 int genome_index; /* index into source file */ member
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H A D | parser.c | 269 loc_current_cp.genome_index = *all_ncps; in scan_for_flame_nodes()
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H A D | flam3.c | 1288 cp->genome_index = 0; in clear_cp()
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/dports/devel/aarch64-none-elf-gcc/gcc-8.4.0/gcc/testsuite/g++.dg/ |
H A D | pr65240.h | 4651 int genome_index; member
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/dports/lang/gcc6-aux/gcc-6-20180516/gcc/testsuite/g++.dg/ |
H A D | pr65240.h | 4651 int genome_index; member
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/dports/lang/gcc12-devel/gcc-12-20211205/gcc/testsuite/g++.dg/ |
H A D | pr65240.h | 4651 int genome_index; member
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/dports/lang/gcc9/gcc-9.4.0/gcc/testsuite/g++.dg/ |
H A D | pr65240.h | 4651 int genome_index; member
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/dports/devel/riscv64-gcc/gcc-8.3.0/gcc/testsuite/g++.dg/ |
H A D | pr65240.h | 4651 int genome_index; member
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/dports/devel/avr-gcc/gcc-10.2.0/gcc/testsuite/g++.dg/ |
H A D | pr65240.h | 4651 int genome_index; member
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/dports/lang/gnat_util/gcc-6-20180516/gcc/testsuite/g++.dg/ |
H A D | pr65240.h | 4651 int genome_index; member
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/dports/lang/gcc11/gcc-11.2.0/gcc/testsuite/g++.dg/ |
H A D | pr65240.h | 4651 int genome_index; member
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/dports/devel/arm-none-eabi-gcc/gcc-8.4.0/gcc/testsuite/g++.dg/ |
H A D | pr65240.h | 4651 int genome_index; member
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/dports/devel/riscv64-none-elf-gcc/gcc-8.4.0/gcc/testsuite/g++.dg/ |
H A D | pr65240.h | 4651 int genome_index; member
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/dports/lang/gcc9-aux/gcc-9.1.0/gcc/testsuite/g++.dg/ |
H A D | pr65240.h | 4651 int genome_index; member
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/dports/misc/cxx_atomics_pic/gcc-11.2.0/gcc/testsuite/g++.dg/ |
H A D | pr65240.h | 4651 int genome_index; member
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/dports/lang/gcc10/gcc-10.3.0/gcc/testsuite/g++.dg/ |
H A D | pr65240.h | 4651 int genome_index; member
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/dports/lang/gcc9-devel/gcc-9-20211007/gcc/testsuite/g++.dg/ |
H A D | pr65240.h | 4651 int genome_index; member
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