Home
last modified time | relevance | path

Searched refs:genome_index (Results 1 – 25 of 29) sorted by relevance

12

/dports/biology/py-hits/hits-0.1/hits/
H A Dgenomes.py53 genome_index = get_genome_index(genome_dir)
61 fasta_file_name = genome_index[rname].file_name
78 genome_index = get_genome_index(genome_dir)
86 seq_name: fasta_files[genome_index[seq_name].file_name]
87 for seq_name in genome_index
131 def max_RNAME_length(genome_index): argument
132 length = max(len(name) for name in genome_index)
135 def max_POS_length(genome_index): argument
136 length = max(len(str(genome_index[name].length)) for name in genome_index)
139 def max_tid_length(genome_index): argument
[all …]
H A Dvariants.py504 genome_index = genomes.get_genome_index(genome_dir)
512 end = genome_index[rname].length - 1
/dports/biology/bowtie/bowtie-1.3.1/scripts/test/
H A Dlarge_idx.py27 genome_index = os.path.join(wdir,'human')
31 args = " %s -f %s" % (genome_index,reads)
42 genome_index = os.path.join(wdir,'mouse')
46 args = " %s -f %s" % (genome_index,reads)
57 genome_index = os.path.join(wdir,'ms_hum')
62 args = " %s -f %s" % (genome_index,reads_human)
64 args = " %s -f %s" % (genome_index,reads_mouse)
/dports/biology/bowtie2/bowtie2-2.4.4/scripts/test/
H A Dlarge_idx.py27 genome_index = os.path.join(wdir,'human')
31 args = "-x %s -f -U %s" % (genome_index,reads)
42 genome_index = os.path.join(wdir,'mouse')
46 args = "-x %s -f -U %s" % (genome_index,reads)
57 genome_index = os.path.join(wdir,'ms_hum')
62 args = "-x %s -f -U %s" % (genome_index,reads_human)
64 args = "-x %s -f -U %s" % (genome_index,reads_mouse)
/dports/biology/py-resdk/resdk-13.8.0/tests/functional/docs/
H A De2e_docs.py113 genome_index = res.run(
120 self.set_slug(genome_index, slug)
122 return genome_index
153 self.genome_index = self.create_genome_index(
197 self.genome_index = self.create_genome_index(
/dports/biology/py-resdk/resdk-13.8.0/docs/files/
H A Dstart.py18 genome_index = res.data.get('resdk-example-genome-index') variable
34 'genome': genome_index.id,
H A Dtutorial-create.py68 genome_index = res.data.get('resdk-example-genome-index') variable
73 'genome': genome_index,
/dports/graphics/flam3/flam3-3.1.1-5-g7fb50c8/
H A Dflam3-genome.c157 sprintf(buffer,"%d",parent0->genome_index); in create_new_editdoc()
164 sprintf(buffer,"%d",parent0->genome_index); in create_new_editdoc()
177 sprintf(buffer,"%d",parent1->genome_index); in create_new_editdoc()
184 sprintf(buffer,"%d",parent1->genome_index); in create_new_editdoc()
H A Dflam3.h466 int genome_index; /* index into source file */ member
H A Dparser.c269 loc_current_cp.genome_index = *all_ncps; in scan_for_flame_nodes()
H A Dflam3.c1288 cp->genome_index = 0; in clear_cp()
/dports/devel/aarch64-none-elf-gcc/gcc-8.4.0/gcc/testsuite/g++.dg/
H A Dpr65240.h4651 int genome_index; member
/dports/lang/gcc6-aux/gcc-6-20180516/gcc/testsuite/g++.dg/
H A Dpr65240.h4651 int genome_index; member
/dports/lang/gcc12-devel/gcc-12-20211205/gcc/testsuite/g++.dg/
H A Dpr65240.h4651 int genome_index; member
/dports/lang/gcc9/gcc-9.4.0/gcc/testsuite/g++.dg/
H A Dpr65240.h4651 int genome_index; member
/dports/devel/riscv64-gcc/gcc-8.3.0/gcc/testsuite/g++.dg/
H A Dpr65240.h4651 int genome_index; member
/dports/devel/avr-gcc/gcc-10.2.0/gcc/testsuite/g++.dg/
H A Dpr65240.h4651 int genome_index; member
/dports/lang/gnat_util/gcc-6-20180516/gcc/testsuite/g++.dg/
H A Dpr65240.h4651 int genome_index; member
/dports/lang/gcc11/gcc-11.2.0/gcc/testsuite/g++.dg/
H A Dpr65240.h4651 int genome_index; member
/dports/devel/arm-none-eabi-gcc/gcc-8.4.0/gcc/testsuite/g++.dg/
H A Dpr65240.h4651 int genome_index; member
/dports/devel/riscv64-none-elf-gcc/gcc-8.4.0/gcc/testsuite/g++.dg/
H A Dpr65240.h4651 int genome_index; member
/dports/lang/gcc9-aux/gcc-9.1.0/gcc/testsuite/g++.dg/
H A Dpr65240.h4651 int genome_index; member
/dports/misc/cxx_atomics_pic/gcc-11.2.0/gcc/testsuite/g++.dg/
H A Dpr65240.h4651 int genome_index; member
/dports/lang/gcc10/gcc-10.3.0/gcc/testsuite/g++.dg/
H A Dpr65240.h4651 int genome_index; member
/dports/lang/gcc9-devel/gcc-9-20211007/gcc/testsuite/g++.dg/
H A Dpr65240.h4651 int genome_index; member

12