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Searched refs:genovec_3freq (Results 1 – 6 of 6) sorted by relevance

/dports/biology/plink/plink-ng-79b2df8c/1.9/
H A Dplink_lasso.c179 …genovec_3freq(loadbuf_collapsed, sample_include2, sample_valid_ctl2, &missing_ct, &het_ct, &homset… in lasso_bigmem()
398 …genovec_3freq(loadbuf_collapsed, sample_include2, sample_valid_ctl2, &missing_ct, &het_ct, &homset… in load_and_normalize()
H A Dplink_ld.c7455 genovec_3freq(window_data_ptr, index_data, founder_ctl2, &(counts[0]), &(counts[1]), &(counts[2])); in haploview_blocks()
7457 …genovec_3freq(window_data_ptr, &(index_data[founder_ctv2]), founder_ctl2, &(counts[3]), &(counts[4… in haploview_blocks()
7459 …genovec_3freq(window_data_ptr, &(index_data[2 * founder_ctv2]), founder_ctl2, &(counts[6]), &(coun… in haploview_blocks()
9566 genovec_3freq(casebuf, ulptr, case_ctl2, &missing_ct, &uii, &ujj); in epistasis_report()
9570 genovec_3freq(ctrlbuf, ulptr, ctrl_ctl2, &missing_ct, &uii, &ujj); in epistasis_report()
11486 genovec_3freq(nextsnp_ptr, maskbuf, sample_ctl2, &umm, &(uiptr[1]), &(uiptr[2])); in test_mishap()
13404 …genovec_3freq(window_data_ptr, index_data, founder_ctl2, &(counts[0]), &(counts[1]), &(counts[2])); in clump_reports()
13406 …genovec_3freq(window_data_ptr, &(index_data[founder_ctv2]), founder_ctl2, &(counts[3]), &(counts[4… in clump_reports()
13534 … genovec_3freq(window_data, index_data, founder_ctl2, &(counts[0]), &(counts[1]), &(counts[2])); in clump_reports()
13536 …genovec_3freq(window_data, &(index_data[founder_ctv2]), founder_ctl2, &(counts[3]), &(counts[4]), … in clump_reports()
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H A Dplink_assoc.c2401 …genovec_3freq(&(loadbuf[marker_bidx * pheno_nm_ctv2]), &(perm_vecs[pidx * pheno_nm_ctv2]), pheno_n… in assoc_adapt_thread()
3800 …genovec_3freq(&(loadbuf[marker_bidx * pheno_nm_ctv2]), &(perm_vecs[pidx * pheno_nm_ctv2]), pheno_n… in model_adapt_domrec_thread()
4686 …genovec_3freq(&(loadbuf[marker_bidx * pheno_nm_ctv2]), &(perm_vecs[pidx * pheno_nm_ctv2]), pheno_n… in model_adapt_gen_thread()
5032 …genovec_3freq(&(loadbuf[marker_bidx * pheno_nm_ctv2]), &(perm_vecs[pidx * pheno_nm_ctv2]), pheno_n… in model_adapt_best_thread()
8529 genovec_3freq(loadbuf_ptr, sample_include2, pheno_nm_ctv2, &missing_ct, &het_ct, &homcom_ct); in qassoc()
H A Dplink_common.h2547 void genovec_3freq(const uintptr_t* __restrict geno_vec, const uintptr_t* __restrict include_quater…
H A Dplink_misc.c2790 …genovec_3freq(loadbuf, case_include2, unfiltered_sample_ctl2, &case_missing_ct, &uii, &case_set_ct… in write_cc_freqs()
2792 …genovec_3freq(loadbuf, ctrl_include2, unfiltered_sample_ctl2, &ctrl_missing_ct, &uii, &ctrl_set_ct… in write_cc_freqs()
H A Dplink_common.c8011 void genovec_3freq(const uintptr_t* __restrict geno_vec, const uintptr_t* __restrict include_quater… in genovec_3freq() function