/dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/test/ngs-python/ |
H A D | tests.py | 19 def getAlignment(id): function 21 return run.getAlignment(id) 25 return run.getAlignment(id) 235 al = getAlignment(PrimaryOnly + ".PA.1") 240 al = getAlignment(PrimaryOnly + ".PA.4") 245 al = getAlignment(PrimaryOnly + ".PA.10") 268 self.assertTrue(getAlignment(PrimaryOnly + ".PA.1").hasMate()) 278 getAlignment(PrimaryOnly + ".PA.99").getMateAlignmentId() 295 getAlignment(PrimaryOnly + ".PA.99").getMateAlignment() 318 alignment = readCollection.getAlignment(PrimaryOnly + ".PA.1") [all …]
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/dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/test/ngs-python/ |
H A D | tests.py | 19 def getAlignment(id): function 21 return run.getAlignment(id) 25 return run.getAlignment(id) 235 al = getAlignment(PrimaryOnly + ".PA.1") 240 al = getAlignment(PrimaryOnly + ".PA.4") 245 al = getAlignment(PrimaryOnly + ".PA.10") 268 self.assertTrue(getAlignment(PrimaryOnly + ".PA.1").hasMate()) 278 getAlignment(PrimaryOnly + ".PA.99").getMateAlignmentId() 295 getAlignment(PrimaryOnly + ".PA.99").getMateAlignment() 318 alignment = readCollection.getAlignment(PrimaryOnly + ".PA.1") [all …]
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/dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/test/ngs-java/ |
H A D | ngs_test_CSRA1.java | 291 ngs.Alignment getAlignment ( String id ) throws ngs.ErrorMsg in getAlignment() method in ngs_test_CSRA1 294 return run . getAlignment(id); in getAlignment() 299 return run . getAlignment(id); in getSecondaryAlignment() 412 ngs . Alignment al = getAlignment ( PrimaryOnly + ".PA.1" ); in Alignment_getSoftClip_None() 419 ngs . Alignment al = getAlignment ( PrimaryOnly + ".PA.4" ); in Alignment_getSoftClip_Left() 426 ngs . Alignment al = getAlignment ( PrimaryOnly + ".PA.10" ); in Alignment_getSoftClip_Right() 467 assertTrue( getAlignment ( PrimaryOnly + ".PA.1" ) . hasMate ( ) ); in Alignment_hasMate_Primary_Yes() 511 getAlignment ( PrimaryOnly + ".PA.99" ) . getMateAlignment (); in Alignment_getMateAlignment_Missing() 551 alignment = readCollection . getAlignment ( PrimaryOnly + ".PA.2" ); in Alignment_isPaired_MultiFragmentsPerSpot() 555 alignment = readCollection . getAlignment ( PrimaryOnly + ".PA.6" ); in Alignment_isPaired_MultiFragmentsPerSpot() [all …]
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/dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/test/ngs-java/ |
H A D | ngs_test_CSRA1.java | 291 ngs.Alignment getAlignment ( String id ) throws ngs.ErrorMsg in getAlignment() method in ngs_test_CSRA1 294 return run . getAlignment(id); in getAlignment() 299 return run . getAlignment(id); in getSecondaryAlignment() 412 ngs . Alignment al = getAlignment ( PrimaryOnly + ".PA.1" ); in Alignment_getSoftClip_None() 419 ngs . Alignment al = getAlignment ( PrimaryOnly + ".PA.4" ); in Alignment_getSoftClip_Left() 426 ngs . Alignment al = getAlignment ( PrimaryOnly + ".PA.10" ); in Alignment_getSoftClip_Right() 467 assertTrue( getAlignment ( PrimaryOnly + ".PA.1" ) . hasMate ( ) ); in Alignment_hasMate_Primary_Yes() 511 getAlignment ( PrimaryOnly + ".PA.99" ) . getMateAlignment (); in Alignment_getMateAlignment_Missing() 551 alignment = readCollection . getAlignment ( PrimaryOnly + ".PA.2" ); in Alignment_isPaired_MultiFragmentsPerSpot() 555 alignment = readCollection . getAlignment ( PrimaryOnly + ".PA.6" ); in Alignment_isPaired_MultiFragmentsPerSpot() [all …]
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/dports/biology/jalview/jalview/src/jalview/appletgui/ |
H A D | SeqPanel.java | 135 av.getAlignment().getSequences()); in endEditing() 428 if (av.getAlignment().isNucleotide()) in setStatusMessage() 466 AlignmentI al = this.av.getAlignment(); in setStatusMessage() 532 if ((seq < av.getAlignment().getHeight()) in mousePressed() 713 if (seq < av.getAlignment().getHeight() in doMousePressed() 821 if (av.getAlignment().isNucleotide()) in mouseMoved() 1376 av.getAlignment(), true); in insertChar() 1390 av.getAlignment(), true); in deleteChar() 1547 if (y > av.getAlignment().getHeight()) in doMouseDraggedDefineMode() 1818 if (av.getAlignment() == null) in selection() [all …]
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/dports/finance/prestashop/prestashop/vendor/phpoffice/phpspreadsheet/src/PhpSpreadsheet/Writer/Xlsx/ |
H A D | Style.php | 399 …plyAlignment', ($spreadsheet->getDefaultStyle()->getAlignment()->getHashCode() != $pStyle->getAlig… 410 if ($pStyle->getAlignment()->getTextRotation() >= 0) { 411 $textRotation = $pStyle->getAlignment()->getTextRotation(); 412 } elseif ($pStyle->getAlignment()->getTextRotation() < 0) { 420 if ($pStyle->getAlignment()->getIndent() > 0) { 423 if ($pStyle->getAlignment()->getReadOrder() > 0) { 465 if ($pStyle->getAlignment()->getHorizontal() !== null) { 468 if ($pStyle->getAlignment()->getVertical() !== null) { 472 if ($pStyle->getAlignment()->getTextRotation() !== null) { 474 if ($pStyle->getAlignment()->getTextRotation() >= 0) { [all …]
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/dports/www/groupoffice/groupoffice-6.4.231-php-71/vendor/phpoffice/phpexcel/Classes/PHPExcel/Writer/Excel2007/ |
H A D | Style.php | 410 …applyAlignment', ($pPHPExcel->getDefaultStyle()->getAlignment()->getHashCode() != $pStyle->getAlig… 421 if ($pStyle->getAlignment()->getTextRotation() >= 0) { 422 $textRotation = $pStyle->getAlignment()->getTextRotation(); 423 } elseif ($pStyle->getAlignment()->getTextRotation() < 0) { 431 if ($pStyle->getAlignment()->getIndent() > 0) { 434 if ($pStyle->getAlignment()->getReadorder() > 0) { 477 if ($pStyle->getAlignment()->getHorizontal() !== null) { 480 if ($pStyle->getAlignment()->getVertical() !== null) { 484 if ($pStyle->getAlignment()->getTextRotation() !== null) { 486 if ($pStyle->getAlignment()->getTextRotation() >= 0) { [all …]
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/dports/www/dolibarr/dolibarr-14.0.3/htdocs/includes/phpoffice/phpspreadsheet/src/PhpSpreadsheet/Writer/Xlsx/ |
H A D | Style.php | 399 …plyAlignment', ($spreadsheet->getDefaultStyle()->getAlignment()->getHashCode() != $pStyle->getAlig… 410 if ($pStyle->getAlignment()->getTextRotation() >= 0) { 411 $textRotation = $pStyle->getAlignment()->getTextRotation(); 412 } elseif ($pStyle->getAlignment()->getTextRotation() < 0) { 420 if ($pStyle->getAlignment()->getIndent() > 0) { 423 if ($pStyle->getAlignment()->getReadOrder() > 0) { 465 if ($pStyle->getAlignment()->getHorizontal() !== null) { 468 if ($pStyle->getAlignment()->getVertical() !== null) { 472 if ($pStyle->getAlignment()->getTextRotation() !== null) { 474 if ($pStyle->getAlignment()->getTextRotation() >= 0) { [all …]
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/dports/www/dolibarr13/dolibarr-13.0.5/htdocs/includes/phpoffice/PhpSpreadsheet/Writer/Xlsx/ |
H A D | Style.php | 399 …plyAlignment', ($spreadsheet->getDefaultStyle()->getAlignment()->getHashCode() != $pStyle->getAlig… 410 if ($pStyle->getAlignment()->getTextRotation() >= 0) { 411 $textRotation = $pStyle->getAlignment()->getTextRotation(); 412 } elseif ($pStyle->getAlignment()->getTextRotation() < 0) { 420 if ($pStyle->getAlignment()->getIndent() > 0) { 423 if ($pStyle->getAlignment()->getReadOrder() > 0) { 465 if ($pStyle->getAlignment()->getHorizontal() !== null) { 468 if ($pStyle->getAlignment()->getVertical() !== null) { 472 if ($pStyle->getAlignment()->getTextRotation() !== null) { 474 if ($pStyle->getAlignment()->getTextRotation() >= 0) { [all …]
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/dports/www/ilias/ILIAS-5.4.25/libs/composer/vendor/phpoffice/phpspreadsheet/src/PhpSpreadsheet/Writer/Xlsx/ |
H A D | Style.php | 395 …plyAlignment', ($spreadsheet->getDefaultStyle()->getAlignment()->getHashCode() != $pStyle->getAlig… 406 if ($pStyle->getAlignment()->getTextRotation() >= 0) { 407 $textRotation = $pStyle->getAlignment()->getTextRotation(); 408 } elseif ($pStyle->getAlignment()->getTextRotation() < 0) { 416 if ($pStyle->getAlignment()->getIndent() > 0) { 419 if ($pStyle->getAlignment()->getReadOrder() > 0) { 461 if ($pStyle->getAlignment()->getHorizontal() !== null) { 464 if ($pStyle->getAlignment()->getVertical() !== null) { 468 if ($pStyle->getAlignment()->getTextRotation() !== null) { 470 if ($pStyle->getAlignment()->getTextRotation() >= 0) { [all …]
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/dports/www/groupoffice/groupoffice-6.4.231-php-71/vendor/phpoffice/phpspreadsheet/src/PhpSpreadsheet/Writer/Xlsx/ |
H A D | Style.php | 395 …plyAlignment', ($spreadsheet->getDefaultStyle()->getAlignment()->getHashCode() != $pStyle->getAlig… 406 if ($pStyle->getAlignment()->getTextRotation() >= 0) { 407 $textRotation = $pStyle->getAlignment()->getTextRotation(); 408 } elseif ($pStyle->getAlignment()->getTextRotation() < 0) { 416 if ($pStyle->getAlignment()->getIndent() > 0) { 419 if ($pStyle->getAlignment()->getReadOrder() > 0) { 461 if ($pStyle->getAlignment()->getHorizontal() !== null) { 464 if ($pStyle->getAlignment()->getVertical() !== null) { 468 if ($pStyle->getAlignment()->getTextRotation() !== null) { 470 if ($pStyle->getAlignment()->getTextRotation() >= 0) { [all …]
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/dports/www/thirtybees/thirtybees-1.1.0/vendor/phpoffice/phpexcel/Classes/PHPExcel/Writer/Excel2007/ |
H A D | Style.php | 410 …applyAlignment', ($pPHPExcel->getDefaultStyle()->getAlignment()->getHashCode() != $pStyle->getAlig… 421 if ($pStyle->getAlignment()->getTextRotation() >= 0) { 422 $textRotation = $pStyle->getAlignment()->getTextRotation(); 423 } elseif ($pStyle->getAlignment()->getTextRotation() < 0) { 431 if ($pStyle->getAlignment()->getIndent() > 0) { 434 if ($pStyle->getAlignment()->getReadorder() > 0) { 477 if ($pStyle->getAlignment()->getHorizontal() !== null) { 480 if ($pStyle->getAlignment()->getVertical() !== null) { 484 if ($pStyle->getAlignment()->getTextRotation() !== null) { 486 if ($pStyle->getAlignment()->getTextRotation() >= 0) { [all …]
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/dports/www/moodle310/moodle/lib/phpspreadsheet/vendor/phpoffice/phpspreadsheet/src/PhpSpreadsheet/Writer/Xlsx/ |
H A D | Style.php | 399 …plyAlignment', ($spreadsheet->getDefaultStyle()->getAlignment()->getHashCode() != $pStyle->getAlig… 410 if ($pStyle->getAlignment()->getTextRotation() >= 0) { 411 $textRotation = $pStyle->getAlignment()->getTextRotation(); 412 } elseif ($pStyle->getAlignment()->getTextRotation() < 0) { 420 if ($pStyle->getAlignment()->getIndent() > 0) { 423 if ($pStyle->getAlignment()->getReadOrder() > 0) { 465 if ($pStyle->getAlignment()->getHorizontal() !== null) { 468 if ($pStyle->getAlignment()->getVertical() !== null) { 472 if ($pStyle->getAlignment()->getTextRotation() !== null) { 474 if ($pStyle->getAlignment()->getTextRotation() >= 0) { [all …]
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/dports/www/moodle311/moodle/lib/phpspreadsheet/vendor/phpoffice/phpspreadsheet/src/PhpSpreadsheet/Writer/Xlsx/ |
H A D | Style.php | 395 …plyAlignment', ($spreadsheet->getDefaultStyle()->getAlignment()->getHashCode() != $pStyle->getAlig… 406 if ($pStyle->getAlignment()->getTextRotation() >= 0) { 407 $textRotation = $pStyle->getAlignment()->getTextRotation(); 408 } elseif ($pStyle->getAlignment()->getTextRotation() < 0) { 416 if ($pStyle->getAlignment()->getIndent() > 0) { 419 if ($pStyle->getAlignment()->getReadOrder() > 0) { 461 if ($pStyle->getAlignment()->getHorizontal() !== null) { 464 if ($pStyle->getAlignment()->getVertical() !== null) { 468 if ($pStyle->getAlignment()->getTextRotation() !== null) { 470 if ($pStyle->getAlignment()->getTextRotation() >= 0) { [all …]
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/dports/www/moodle39/moodle/lib/phpspreadsheet/vendor/phpoffice/phpspreadsheet/src/PhpSpreadsheet/Writer/Xlsx/ |
H A D | Style.php | 399 …plyAlignment', ($spreadsheet->getDefaultStyle()->getAlignment()->getHashCode() != $pStyle->getAlig… 410 if ($pStyle->getAlignment()->getTextRotation() >= 0) { 411 $textRotation = $pStyle->getAlignment()->getTextRotation(); 412 } elseif ($pStyle->getAlignment()->getTextRotation() < 0) { 420 if ($pStyle->getAlignment()->getIndent() > 0) { 423 if ($pStyle->getAlignment()->getReadOrder() > 0) { 465 if ($pStyle->getAlignment()->getHorizontal() !== null) { 468 if ($pStyle->getAlignment()->getVertical() !== null) { 472 if ($pStyle->getAlignment()->getTextRotation() !== null) { 474 if ($pStyle->getAlignment()->getTextRotation() >= 0) { [all …]
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/dports/devel/llvm-devel/llvm-project-f05c95f10fc1d8171071735af8ad3a9e87633120/clang/lib/CodeGen/ |
H A D | CGBuilder.h | 70 Addr.getAlignment().getAsAlign(), Name); 76 Addr.getAlignment().getAsAlign(), Name); in CreateLoad() 154 Addr.getAlignment()); 161 Addr.getAlignment()); 177 return Address(Ptr, Addr.getAlignment()); 197 Addr.getAlignment().alignmentAtOffset(Offset)); 218 Addr.getAlignment().alignmentAtOffset(Index * EltSize)); 259 Addr.getAlignment().alignmentAtOffset(Offset)); 266 Addr.getAlignment().alignmentAtOffset(Offset)); 281 return Address(GEP, Addr.getAlignment().alignmentAtOffset( [all …]
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/dports/devel/llvm12/llvm-project-12.0.1.src/clang/lib/CodeGen/ |
H A D | CGBuilder.h | 70 Addr.getAlignment().getAsAlign(), Name); 76 Addr.getAlignment().getAsAlign(), Name); in CreateLoad() 139 Addr.getAlignment()); 146 Addr.getAlignment()); 162 return Address(Ptr, Addr.getAlignment()); 182 Addr.getAlignment().alignmentAtOffset(Offset)); 203 Addr.getAlignment().alignmentAtOffset(Index * EltSize)); 243 Addr.getAlignment().alignmentAtOffset(Offset)); 249 Addr.getAlignment().alignmentAtOffset(Offset)); 264 return Address(GEP, Addr.getAlignment().alignmentAtOffset( [all …]
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/dports/devel/llvm11/llvm-11.0.1.src/tools/clang/lib/CodeGen/ |
H A D | CGBuilder.h | 70 Addr.getAlignment().getAsAlign(), Name); 76 Addr.getAlignment().getAsAlign(), Name); in CreateLoad() 139 Addr.getAlignment()); 146 Addr.getAlignment()); 162 return Address(Ptr, Addr.getAlignment()); 182 Addr.getAlignment().alignmentAtOffset(Offset)); 203 Addr.getAlignment().alignmentAtOffset(Index * EltSize)); 243 Addr.getAlignment().alignmentAtOffset(Offset)); 249 Addr.getAlignment().alignmentAtOffset(Offset)); 264 return Address(GEP, Addr.getAlignment().alignmentAtOffset( [all …]
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/dports/devel/llvm-cheri/llvm-project-37c49ff00e3eadce5d8703fdc4497f28458c64a8/clang/lib/CodeGen/ |
H A D | CGBuilder.h | 70 Addr.getAlignment().getAsAlign(), Name); 76 Addr.getAlignment().getAsAlign(), Name); in CreateLoad() 139 Addr.getAlignment()); 146 Addr.getAlignment()); 162 return Address(Ptr, Addr.getAlignment()); 182 Addr.getAlignment().alignmentAtOffset(Offset)); 203 Addr.getAlignment().alignmentAtOffset(Index * EltSize)); 243 Addr.getAlignment().alignmentAtOffset(Offset)); 249 Addr.getAlignment().alignmentAtOffset(Offset)); 264 return Address(GEP, Addr.getAlignment().alignmentAtOffset( [all …]
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/dports/devel/wasi-compiler-rt13/llvm-project-13.0.1.src/clang/lib/CodeGen/ |
H A D | CGBuilder.h | 70 Addr.getAlignment().getAsAlign(), Name); 76 Addr.getAlignment().getAsAlign(), Name); in CreateLoad() 154 Addr.getAlignment()); 161 Addr.getAlignment()); 177 return Address(Ptr, Addr.getAlignment()); 197 Addr.getAlignment().alignmentAtOffset(Offset)); 218 Addr.getAlignment().alignmentAtOffset(Index * EltSize)); 259 Addr.getAlignment().alignmentAtOffset(Offset)); 266 Addr.getAlignment().alignmentAtOffset(Offset)); 281 return Address(GEP, Addr.getAlignment().alignmentAtOffset( [all …]
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/dports/devel/wasi-libcxx/llvm-project-13.0.1.src/clang/lib/CodeGen/ |
H A D | CGBuilder.h | 70 Addr.getAlignment().getAsAlign(), Name); 76 Addr.getAlignment().getAsAlign(), Name); in CreateLoad() 154 Addr.getAlignment()); 161 Addr.getAlignment()); 177 return Address(Ptr, Addr.getAlignment()); 197 Addr.getAlignment().alignmentAtOffset(Offset)); 218 Addr.getAlignment().alignmentAtOffset(Index * EltSize)); 259 Addr.getAlignment().alignmentAtOffset(Offset)); 266 Addr.getAlignment().alignmentAtOffset(Offset)); 281 return Address(GEP, Addr.getAlignment().alignmentAtOffset( [all …]
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/dports/www/chromium-legacy/chromium-88.0.4324.182/third_party/llvm/clang/lib/CodeGen/ |
H A D | CGBuilder.h | 70 Addr.getAlignment().getAsAlign(), Name); 76 Addr.getAlignment().getAsAlign(), Name); in CreateLoad() 139 Addr.getAlignment()); 146 Addr.getAlignment()); 162 return Address(Ptr, Addr.getAlignment()); 182 Addr.getAlignment().alignmentAtOffset(Offset)); 203 Addr.getAlignment().alignmentAtOffset(Index * EltSize)); 243 Addr.getAlignment().alignmentAtOffset(Offset)); 249 Addr.getAlignment().alignmentAtOffset(Offset)); 264 return Address(GEP, Addr.getAlignment().alignmentAtOffset( [all …]
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/dports/lang/rust/rustc-1.58.1-src/src/llvm-project/clang/lib/CodeGen/ |
H A D | CGBuilder.h | 70 Addr.getAlignment().getAsAlign(), Name); 76 Addr.getAlignment().getAsAlign(), Name); in CreateLoad() 154 Addr.getAlignment()); 161 Addr.getAlignment()); 177 return Address(Ptr, Addr.getAlignment()); 197 Addr.getAlignment().alignmentAtOffset(Offset)); 218 Addr.getAlignment().alignmentAtOffset(Index * EltSize)); 259 Addr.getAlignment().alignmentAtOffset(Offset)); 266 Addr.getAlignment().alignmentAtOffset(Offset)); 281 return Address(GEP, Addr.getAlignment().alignmentAtOffset( [all …]
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/dports/devel/wasi-compiler-rt12/llvm-project-12.0.1.src/clang/lib/CodeGen/ |
H A D | CGBuilder.h | 70 Addr.getAlignment().getAsAlign(), Name); 76 Addr.getAlignment().getAsAlign(), Name); in CreateLoad() 139 Addr.getAlignment()); 146 Addr.getAlignment()); 162 return Address(Ptr, Addr.getAlignment()); 182 Addr.getAlignment().alignmentAtOffset(Offset)); 203 Addr.getAlignment().alignmentAtOffset(Index * EltSize)); 243 Addr.getAlignment().alignmentAtOffset(Offset)); 249 Addr.getAlignment().alignmentAtOffset(Offset)); 264 return Address(GEP, Addr.getAlignment().alignmentAtOffset( [all …]
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/dports/devel/llvm13/llvm-project-13.0.1.src/clang/lib/CodeGen/ |
H A D | CGBuilder.h | 70 Addr.getAlignment().getAsAlign(), Name); 76 Addr.getAlignment().getAsAlign(), Name); in CreateLoad() 154 Addr.getAlignment()); 161 Addr.getAlignment()); 177 return Address(Ptr, Addr.getAlignment()); 197 Addr.getAlignment().alignmentAtOffset(Offset)); 218 Addr.getAlignment().alignmentAtOffset(Index * EltSize)); 259 Addr.getAlignment().alignmentAtOffset(Offset)); 266 Addr.getAlignment().alignmentAtOffset(Offset)); 281 return Address(GEP, Addr.getAlignment().alignmentAtOffset( [all …]
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