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12345678910>>...154

/dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/test/ngs-python/
H A Dtests.py19 def getAlignment(id): function
21 return run.getAlignment(id)
25 return run.getAlignment(id)
235 al = getAlignment(PrimaryOnly + ".PA.1")
240 al = getAlignment(PrimaryOnly + ".PA.4")
245 al = getAlignment(PrimaryOnly + ".PA.10")
268 self.assertTrue(getAlignment(PrimaryOnly + ".PA.1").hasMate())
278 getAlignment(PrimaryOnly + ".PA.99").getMateAlignmentId()
295 getAlignment(PrimaryOnly + ".PA.99").getMateAlignment()
318 alignment = readCollection.getAlignment(PrimaryOnly + ".PA.1")
[all …]
/dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/test/ngs-python/
H A Dtests.py19 def getAlignment(id): function
21 return run.getAlignment(id)
25 return run.getAlignment(id)
235 al = getAlignment(PrimaryOnly + ".PA.1")
240 al = getAlignment(PrimaryOnly + ".PA.4")
245 al = getAlignment(PrimaryOnly + ".PA.10")
268 self.assertTrue(getAlignment(PrimaryOnly + ".PA.1").hasMate())
278 getAlignment(PrimaryOnly + ".PA.99").getMateAlignmentId()
295 getAlignment(PrimaryOnly + ".PA.99").getMateAlignment()
318 alignment = readCollection.getAlignment(PrimaryOnly + ".PA.1")
[all …]
/dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/test/ngs-java/
H A Dngs_test_CSRA1.java291 ngs.Alignment getAlignment ( String id ) throws ngs.ErrorMsg in getAlignment() method in ngs_test_CSRA1
294 return run . getAlignment(id); in getAlignment()
299 return run . getAlignment(id); in getSecondaryAlignment()
412 ngs . Alignment al = getAlignment ( PrimaryOnly + ".PA.1" ); in Alignment_getSoftClip_None()
419 ngs . Alignment al = getAlignment ( PrimaryOnly + ".PA.4" ); in Alignment_getSoftClip_Left()
426 ngs . Alignment al = getAlignment ( PrimaryOnly + ".PA.10" ); in Alignment_getSoftClip_Right()
467 assertTrue( getAlignment ( PrimaryOnly + ".PA.1" ) . hasMate ( ) ); in Alignment_hasMate_Primary_Yes()
511 getAlignment ( PrimaryOnly + ".PA.99" ) . getMateAlignment (); in Alignment_getMateAlignment_Missing()
551 alignment = readCollection . getAlignment ( PrimaryOnly + ".PA.2" ); in Alignment_isPaired_MultiFragmentsPerSpot()
555 alignment = readCollection . getAlignment ( PrimaryOnly + ".PA.6" ); in Alignment_isPaired_MultiFragmentsPerSpot()
[all …]
/dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/test/ngs-java/
H A Dngs_test_CSRA1.java291 ngs.Alignment getAlignment ( String id ) throws ngs.ErrorMsg in getAlignment() method in ngs_test_CSRA1
294 return run . getAlignment(id); in getAlignment()
299 return run . getAlignment(id); in getSecondaryAlignment()
412 ngs . Alignment al = getAlignment ( PrimaryOnly + ".PA.1" ); in Alignment_getSoftClip_None()
419 ngs . Alignment al = getAlignment ( PrimaryOnly + ".PA.4" ); in Alignment_getSoftClip_Left()
426 ngs . Alignment al = getAlignment ( PrimaryOnly + ".PA.10" ); in Alignment_getSoftClip_Right()
467 assertTrue( getAlignment ( PrimaryOnly + ".PA.1" ) . hasMate ( ) ); in Alignment_hasMate_Primary_Yes()
511 getAlignment ( PrimaryOnly + ".PA.99" ) . getMateAlignment (); in Alignment_getMateAlignment_Missing()
551 alignment = readCollection . getAlignment ( PrimaryOnly + ".PA.2" ); in Alignment_isPaired_MultiFragmentsPerSpot()
555 alignment = readCollection . getAlignment ( PrimaryOnly + ".PA.6" ); in Alignment_isPaired_MultiFragmentsPerSpot()
[all …]
/dports/biology/jalview/jalview/src/jalview/appletgui/
H A DSeqPanel.java135 av.getAlignment().getSequences()); in endEditing()
428 if (av.getAlignment().isNucleotide()) in setStatusMessage()
466 AlignmentI al = this.av.getAlignment(); in setStatusMessage()
532 if ((seq < av.getAlignment().getHeight()) in mousePressed()
713 if (seq < av.getAlignment().getHeight() in doMousePressed()
821 if (av.getAlignment().isNucleotide()) in mouseMoved()
1376 av.getAlignment(), true); in insertChar()
1390 av.getAlignment(), true); in deleteChar()
1547 if (y > av.getAlignment().getHeight()) in doMouseDraggedDefineMode()
1818 if (av.getAlignment() == null) in selection()
[all …]
/dports/finance/prestashop/prestashop/vendor/phpoffice/phpspreadsheet/src/PhpSpreadsheet/Writer/Xlsx/
H A DStyle.php399 …plyAlignment', ($spreadsheet->getDefaultStyle()->getAlignment()->getHashCode() != $pStyle->getAlig…
410 if ($pStyle->getAlignment()->getTextRotation() >= 0) {
411 $textRotation = $pStyle->getAlignment()->getTextRotation();
412 } elseif ($pStyle->getAlignment()->getTextRotation() < 0) {
420 if ($pStyle->getAlignment()->getIndent() > 0) {
423 if ($pStyle->getAlignment()->getReadOrder() > 0) {
465 if ($pStyle->getAlignment()->getHorizontal() !== null) {
468 if ($pStyle->getAlignment()->getVertical() !== null) {
472 if ($pStyle->getAlignment()->getTextRotation() !== null) {
474 if ($pStyle->getAlignment()->getTextRotation() >= 0) {
[all …]
/dports/www/groupoffice/groupoffice-6.4.231-php-71/vendor/phpoffice/phpexcel/Classes/PHPExcel/Writer/Excel2007/
H A DStyle.php410 …applyAlignment', ($pPHPExcel->getDefaultStyle()->getAlignment()->getHashCode() != $pStyle->getAlig…
421 if ($pStyle->getAlignment()->getTextRotation() >= 0) {
422 $textRotation = $pStyle->getAlignment()->getTextRotation();
423 } elseif ($pStyle->getAlignment()->getTextRotation() < 0) {
431 if ($pStyle->getAlignment()->getIndent() > 0) {
434 if ($pStyle->getAlignment()->getReadorder() > 0) {
477 if ($pStyle->getAlignment()->getHorizontal() !== null) {
480 if ($pStyle->getAlignment()->getVertical() !== null) {
484 if ($pStyle->getAlignment()->getTextRotation() !== null) {
486 if ($pStyle->getAlignment()->getTextRotation() >= 0) {
[all …]
/dports/www/dolibarr/dolibarr-14.0.3/htdocs/includes/phpoffice/phpspreadsheet/src/PhpSpreadsheet/Writer/Xlsx/
H A DStyle.php399 …plyAlignment', ($spreadsheet->getDefaultStyle()->getAlignment()->getHashCode() != $pStyle->getAlig…
410 if ($pStyle->getAlignment()->getTextRotation() >= 0) {
411 $textRotation = $pStyle->getAlignment()->getTextRotation();
412 } elseif ($pStyle->getAlignment()->getTextRotation() < 0) {
420 if ($pStyle->getAlignment()->getIndent() > 0) {
423 if ($pStyle->getAlignment()->getReadOrder() > 0) {
465 if ($pStyle->getAlignment()->getHorizontal() !== null) {
468 if ($pStyle->getAlignment()->getVertical() !== null) {
472 if ($pStyle->getAlignment()->getTextRotation() !== null) {
474 if ($pStyle->getAlignment()->getTextRotation() >= 0) {
[all …]
/dports/www/dolibarr13/dolibarr-13.0.5/htdocs/includes/phpoffice/PhpSpreadsheet/Writer/Xlsx/
H A DStyle.php399 …plyAlignment', ($spreadsheet->getDefaultStyle()->getAlignment()->getHashCode() != $pStyle->getAlig…
410 if ($pStyle->getAlignment()->getTextRotation() >= 0) {
411 $textRotation = $pStyle->getAlignment()->getTextRotation();
412 } elseif ($pStyle->getAlignment()->getTextRotation() < 0) {
420 if ($pStyle->getAlignment()->getIndent() > 0) {
423 if ($pStyle->getAlignment()->getReadOrder() > 0) {
465 if ($pStyle->getAlignment()->getHorizontal() !== null) {
468 if ($pStyle->getAlignment()->getVertical() !== null) {
472 if ($pStyle->getAlignment()->getTextRotation() !== null) {
474 if ($pStyle->getAlignment()->getTextRotation() >= 0) {
[all …]
/dports/www/ilias/ILIAS-5.4.25/libs/composer/vendor/phpoffice/phpspreadsheet/src/PhpSpreadsheet/Writer/Xlsx/
H A DStyle.php395 …plyAlignment', ($spreadsheet->getDefaultStyle()->getAlignment()->getHashCode() != $pStyle->getAlig…
406 if ($pStyle->getAlignment()->getTextRotation() >= 0) {
407 $textRotation = $pStyle->getAlignment()->getTextRotation();
408 } elseif ($pStyle->getAlignment()->getTextRotation() < 0) {
416 if ($pStyle->getAlignment()->getIndent() > 0) {
419 if ($pStyle->getAlignment()->getReadOrder() > 0) {
461 if ($pStyle->getAlignment()->getHorizontal() !== null) {
464 if ($pStyle->getAlignment()->getVertical() !== null) {
468 if ($pStyle->getAlignment()->getTextRotation() !== null) {
470 if ($pStyle->getAlignment()->getTextRotation() >= 0) {
[all …]
/dports/www/groupoffice/groupoffice-6.4.231-php-71/vendor/phpoffice/phpspreadsheet/src/PhpSpreadsheet/Writer/Xlsx/
H A DStyle.php395 …plyAlignment', ($spreadsheet->getDefaultStyle()->getAlignment()->getHashCode() != $pStyle->getAlig…
406 if ($pStyle->getAlignment()->getTextRotation() >= 0) {
407 $textRotation = $pStyle->getAlignment()->getTextRotation();
408 } elseif ($pStyle->getAlignment()->getTextRotation() < 0) {
416 if ($pStyle->getAlignment()->getIndent() > 0) {
419 if ($pStyle->getAlignment()->getReadOrder() > 0) {
461 if ($pStyle->getAlignment()->getHorizontal() !== null) {
464 if ($pStyle->getAlignment()->getVertical() !== null) {
468 if ($pStyle->getAlignment()->getTextRotation() !== null) {
470 if ($pStyle->getAlignment()->getTextRotation() >= 0) {
[all …]
/dports/www/thirtybees/thirtybees-1.1.0/vendor/phpoffice/phpexcel/Classes/PHPExcel/Writer/Excel2007/
H A DStyle.php410 …applyAlignment', ($pPHPExcel->getDefaultStyle()->getAlignment()->getHashCode() != $pStyle->getAlig…
421 if ($pStyle->getAlignment()->getTextRotation() >= 0) {
422 $textRotation = $pStyle->getAlignment()->getTextRotation();
423 } elseif ($pStyle->getAlignment()->getTextRotation() < 0) {
431 if ($pStyle->getAlignment()->getIndent() > 0) {
434 if ($pStyle->getAlignment()->getReadorder() > 0) {
477 if ($pStyle->getAlignment()->getHorizontal() !== null) {
480 if ($pStyle->getAlignment()->getVertical() !== null) {
484 if ($pStyle->getAlignment()->getTextRotation() !== null) {
486 if ($pStyle->getAlignment()->getTextRotation() >= 0) {
[all …]
/dports/www/moodle310/moodle/lib/phpspreadsheet/vendor/phpoffice/phpspreadsheet/src/PhpSpreadsheet/Writer/Xlsx/
H A DStyle.php399 …plyAlignment', ($spreadsheet->getDefaultStyle()->getAlignment()->getHashCode() != $pStyle->getAlig…
410 if ($pStyle->getAlignment()->getTextRotation() >= 0) {
411 $textRotation = $pStyle->getAlignment()->getTextRotation();
412 } elseif ($pStyle->getAlignment()->getTextRotation() < 0) {
420 if ($pStyle->getAlignment()->getIndent() > 0) {
423 if ($pStyle->getAlignment()->getReadOrder() > 0) {
465 if ($pStyle->getAlignment()->getHorizontal() !== null) {
468 if ($pStyle->getAlignment()->getVertical() !== null) {
472 if ($pStyle->getAlignment()->getTextRotation() !== null) {
474 if ($pStyle->getAlignment()->getTextRotation() >= 0) {
[all …]
/dports/www/moodle311/moodle/lib/phpspreadsheet/vendor/phpoffice/phpspreadsheet/src/PhpSpreadsheet/Writer/Xlsx/
H A DStyle.php395 …plyAlignment', ($spreadsheet->getDefaultStyle()->getAlignment()->getHashCode() != $pStyle->getAlig…
406 if ($pStyle->getAlignment()->getTextRotation() >= 0) {
407 $textRotation = $pStyle->getAlignment()->getTextRotation();
408 } elseif ($pStyle->getAlignment()->getTextRotation() < 0) {
416 if ($pStyle->getAlignment()->getIndent() > 0) {
419 if ($pStyle->getAlignment()->getReadOrder() > 0) {
461 if ($pStyle->getAlignment()->getHorizontal() !== null) {
464 if ($pStyle->getAlignment()->getVertical() !== null) {
468 if ($pStyle->getAlignment()->getTextRotation() !== null) {
470 if ($pStyle->getAlignment()->getTextRotation() >= 0) {
[all …]
/dports/www/moodle39/moodle/lib/phpspreadsheet/vendor/phpoffice/phpspreadsheet/src/PhpSpreadsheet/Writer/Xlsx/
H A DStyle.php399 …plyAlignment', ($spreadsheet->getDefaultStyle()->getAlignment()->getHashCode() != $pStyle->getAlig…
410 if ($pStyle->getAlignment()->getTextRotation() >= 0) {
411 $textRotation = $pStyle->getAlignment()->getTextRotation();
412 } elseif ($pStyle->getAlignment()->getTextRotation() < 0) {
420 if ($pStyle->getAlignment()->getIndent() > 0) {
423 if ($pStyle->getAlignment()->getReadOrder() > 0) {
465 if ($pStyle->getAlignment()->getHorizontal() !== null) {
468 if ($pStyle->getAlignment()->getVertical() !== null) {
472 if ($pStyle->getAlignment()->getTextRotation() !== null) {
474 if ($pStyle->getAlignment()->getTextRotation() >= 0) {
[all …]
/dports/devel/llvm-devel/llvm-project-f05c95f10fc1d8171071735af8ad3a9e87633120/clang/lib/CodeGen/
H A DCGBuilder.h70 Addr.getAlignment().getAsAlign(), Name);
76 Addr.getAlignment().getAsAlign(), Name); in CreateLoad()
154 Addr.getAlignment());
161 Addr.getAlignment());
177 return Address(Ptr, Addr.getAlignment());
197 Addr.getAlignment().alignmentAtOffset(Offset));
218 Addr.getAlignment().alignmentAtOffset(Index * EltSize));
259 Addr.getAlignment().alignmentAtOffset(Offset));
266 Addr.getAlignment().alignmentAtOffset(Offset));
281 return Address(GEP, Addr.getAlignment().alignmentAtOffset(
[all …]
/dports/devel/llvm12/llvm-project-12.0.1.src/clang/lib/CodeGen/
H A DCGBuilder.h70 Addr.getAlignment().getAsAlign(), Name);
76 Addr.getAlignment().getAsAlign(), Name); in CreateLoad()
139 Addr.getAlignment());
146 Addr.getAlignment());
162 return Address(Ptr, Addr.getAlignment());
182 Addr.getAlignment().alignmentAtOffset(Offset));
203 Addr.getAlignment().alignmentAtOffset(Index * EltSize));
243 Addr.getAlignment().alignmentAtOffset(Offset));
249 Addr.getAlignment().alignmentAtOffset(Offset));
264 return Address(GEP, Addr.getAlignment().alignmentAtOffset(
[all …]
/dports/devel/llvm11/llvm-11.0.1.src/tools/clang/lib/CodeGen/
H A DCGBuilder.h70 Addr.getAlignment().getAsAlign(), Name);
76 Addr.getAlignment().getAsAlign(), Name); in CreateLoad()
139 Addr.getAlignment());
146 Addr.getAlignment());
162 return Address(Ptr, Addr.getAlignment());
182 Addr.getAlignment().alignmentAtOffset(Offset));
203 Addr.getAlignment().alignmentAtOffset(Index * EltSize));
243 Addr.getAlignment().alignmentAtOffset(Offset));
249 Addr.getAlignment().alignmentAtOffset(Offset));
264 return Address(GEP, Addr.getAlignment().alignmentAtOffset(
[all …]
/dports/devel/llvm-cheri/llvm-project-37c49ff00e3eadce5d8703fdc4497f28458c64a8/clang/lib/CodeGen/
H A DCGBuilder.h70 Addr.getAlignment().getAsAlign(), Name);
76 Addr.getAlignment().getAsAlign(), Name); in CreateLoad()
139 Addr.getAlignment());
146 Addr.getAlignment());
162 return Address(Ptr, Addr.getAlignment());
182 Addr.getAlignment().alignmentAtOffset(Offset));
203 Addr.getAlignment().alignmentAtOffset(Index * EltSize));
243 Addr.getAlignment().alignmentAtOffset(Offset));
249 Addr.getAlignment().alignmentAtOffset(Offset));
264 return Address(GEP, Addr.getAlignment().alignmentAtOffset(
[all …]
/dports/devel/wasi-compiler-rt13/llvm-project-13.0.1.src/clang/lib/CodeGen/
H A DCGBuilder.h70 Addr.getAlignment().getAsAlign(), Name);
76 Addr.getAlignment().getAsAlign(), Name); in CreateLoad()
154 Addr.getAlignment());
161 Addr.getAlignment());
177 return Address(Ptr, Addr.getAlignment());
197 Addr.getAlignment().alignmentAtOffset(Offset));
218 Addr.getAlignment().alignmentAtOffset(Index * EltSize));
259 Addr.getAlignment().alignmentAtOffset(Offset));
266 Addr.getAlignment().alignmentAtOffset(Offset));
281 return Address(GEP, Addr.getAlignment().alignmentAtOffset(
[all …]
/dports/devel/wasi-libcxx/llvm-project-13.0.1.src/clang/lib/CodeGen/
H A DCGBuilder.h70 Addr.getAlignment().getAsAlign(), Name);
76 Addr.getAlignment().getAsAlign(), Name); in CreateLoad()
154 Addr.getAlignment());
161 Addr.getAlignment());
177 return Address(Ptr, Addr.getAlignment());
197 Addr.getAlignment().alignmentAtOffset(Offset));
218 Addr.getAlignment().alignmentAtOffset(Index * EltSize));
259 Addr.getAlignment().alignmentAtOffset(Offset));
266 Addr.getAlignment().alignmentAtOffset(Offset));
281 return Address(GEP, Addr.getAlignment().alignmentAtOffset(
[all …]
/dports/www/chromium-legacy/chromium-88.0.4324.182/third_party/llvm/clang/lib/CodeGen/
H A DCGBuilder.h70 Addr.getAlignment().getAsAlign(), Name);
76 Addr.getAlignment().getAsAlign(), Name); in CreateLoad()
139 Addr.getAlignment());
146 Addr.getAlignment());
162 return Address(Ptr, Addr.getAlignment());
182 Addr.getAlignment().alignmentAtOffset(Offset));
203 Addr.getAlignment().alignmentAtOffset(Index * EltSize));
243 Addr.getAlignment().alignmentAtOffset(Offset));
249 Addr.getAlignment().alignmentAtOffset(Offset));
264 return Address(GEP, Addr.getAlignment().alignmentAtOffset(
[all …]
/dports/lang/rust/rustc-1.58.1-src/src/llvm-project/clang/lib/CodeGen/
H A DCGBuilder.h70 Addr.getAlignment().getAsAlign(), Name);
76 Addr.getAlignment().getAsAlign(), Name); in CreateLoad()
154 Addr.getAlignment());
161 Addr.getAlignment());
177 return Address(Ptr, Addr.getAlignment());
197 Addr.getAlignment().alignmentAtOffset(Offset));
218 Addr.getAlignment().alignmentAtOffset(Index * EltSize));
259 Addr.getAlignment().alignmentAtOffset(Offset));
266 Addr.getAlignment().alignmentAtOffset(Offset));
281 return Address(GEP, Addr.getAlignment().alignmentAtOffset(
[all …]
/dports/devel/wasi-compiler-rt12/llvm-project-12.0.1.src/clang/lib/CodeGen/
H A DCGBuilder.h70 Addr.getAlignment().getAsAlign(), Name);
76 Addr.getAlignment().getAsAlign(), Name); in CreateLoad()
139 Addr.getAlignment());
146 Addr.getAlignment());
162 return Address(Ptr, Addr.getAlignment());
182 Addr.getAlignment().alignmentAtOffset(Offset));
203 Addr.getAlignment().alignmentAtOffset(Index * EltSize));
243 Addr.getAlignment().alignmentAtOffset(Offset));
249 Addr.getAlignment().alignmentAtOffset(Offset));
264 return Address(GEP, Addr.getAlignment().alignmentAtOffset(
[all …]
/dports/devel/llvm13/llvm-project-13.0.1.src/clang/lib/CodeGen/
H A DCGBuilder.h70 Addr.getAlignment().getAsAlign(), Name);
76 Addr.getAlignment().getAsAlign(), Name); in CreateLoad()
154 Addr.getAlignment());
161 Addr.getAlignment());
177 return Address(Ptr, Addr.getAlignment());
197 Addr.getAlignment().alignmentAtOffset(Offset));
218 Addr.getAlignment().alignmentAtOffset(Index * EltSize));
259 Addr.getAlignment().alignmentAtOffset(Offset));
266 Addr.getAlignment().alignmentAtOffset(Offset));
281 return Address(GEP, Addr.getAlignment().alignmentAtOffset(
[all …]

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