Searched refs:getBaseQualityCount (Results 1 – 9 of 9) sorted by relevance
20 if (read.getBaseQualityCount() == read.getLength()) { in apply()
54 if (read.getBaseQualityCount() == read.getLength()) { in apply()
21 final int baseQualityCount = read.getBaseQualityCount(); in recordValues()
422 default int getBaseQualityCount(){ in getBaseQualityCount() method
839 quals = new byte[read.getBaseQualityCount()]; in getBaseInsertionQualities()855 quals = new byte[read.getBaseQualityCount()]; in getBaseDeletionQualities()
301 public int getBaseQualityCount(){ in getBaseQualityCount() method in SAMRecordToGATKReadAdapter
68 return read.getLength() == read.getBaseQualityCount();}} in test()
370 reads.filter(r -> r.getLength() == r.getBaseQualityCount()), in sanitize()
446 …Assert.assertEquals(read.getBaseQualityCount(), expectedQuals.length, "Wrong number of base qualit… in testGetAndSetBaseQualities()451 …Assert.assertEquals(read.getBaseQualityCount(), newQuals.length, "Wrong number of base qualities f… in testGetAndSetBaseQualities()