| /dports/biology/ugene/ugene-40.1/src/corelibs/U2Core/src/tasks/ |
| H A D | SaveDocumentTask.cpp | 57 iof = doc->getIOAdapterFactory(); in SaveDocumentTask()
71 …doc(_doc), iof(doc->getIOAdapterFactory()), url(doc->getURL()), flags(f), excludeFileNames(_exclud… in SaveDocumentTask()
139 …estFlag(SaveDoc_Append) ? IOAdapterMode_Append : IOAdapterMode_Write, doc->getIOAdapterFactory())); in run()
153 …estFlag(SaveDoc_Append) ? IOAdapterMode_Append : IOAdapterMode_Write, doc->getIOAdapterFactory())); in run()
171 if (doc && url == doc->getURL() && iof == doc->getIOAdapterFactory()) { in report()
253 …addSubTask(new SaveDocumentTask(doc, doc->getIOAdapterFactory(), url, SaveDocFlags(SaveDoc_Overwri… in SaveMultipleDocuments()
255 addSubTask(new SaveDocumentTask(doc, doc->getIOAdapterFactory(), url)); in SaveMultipleDocuments()
347 …Document *doc = df->createNewUnloadedDocument(saveTask->getIOAdapterFactory(), saveUrl, stateInfo,… in report()
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| H A D | SaveDocumentTask.h | 66 IOAdapterFactory *getIOAdapterFactory() const { in Q_DECLARE_FLAGS()
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| H A D | CopyDocumentTask.cpp | 98 … saveTask = new SaveDocumentTask(dstDoc, dstDoc->getIOAdapterFactory(), dstUrl, SaveDoc_Append); in onSubTaskFinished()
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| H A D | LoadDocumentTask.cpp | 88 IOAdapterFactory *iof = unloadedDoc->getIOAdapterFactory(); in prepare()
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| /dports/biology/ugene/ugene-40.1/src/corelibs/U2View/src/ov_msa/ |
| H A D | ExportSequencesTask.cpp | 83 …auto saveTask = new SaveDocumentTask(takenDoc, takenDoc->getIOAdapterFactory(), takenDoc->getURL()… in prepare()
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| H A D | MaEditorTasks.cpp | 278 …auto saveTask = new SaveDocumentTask(consensusDocument, consensusDocument->getIOAdapterFactory(), … in onSubTaskFinished()
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| /dports/biology/ugene/ugene-40.1/src/corelibs/U2Core/src/models/ |
| H A D | DocumentUtils.cpp | 252 …resultDoc = new Document(doc->getDocumentFormat(), doc->getIOAdapterFactory(), doc->getURL(), doc-… in createCopyRestructuredWithHints()
262 …resultDoc = new Document(doc->getDocumentFormat(), doc->getIOAdapterFactory(), doc->getURL(), doc-… in createCopyRestructuredWithHints()
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| H A D | DocumentModel.h | 380 IOAdapterFactory *getIOAdapterFactory() const { in getIOAdapterFactory() function
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| H A D | DocumentModel.cpp | 130 iof = doc->getIOAdapterFactory(); in storeDocument()
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| /dports/biology/ugene/ugene-40.1/src/plugins_3rdparty/sitecon/src/ |
| H A D | SiteconAlgorithmTests.cpp | 573 …SiteconModel model1 = SiteconIO::readModel(doc1->getIOAdapterFactory(), doc1->getURLString(), stat… in report()
574 …SiteconModel model2 = SiteconIO::readModel(doc2->getIOAdapterFactory(), doc2->getURLString(), stat… in report()
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| /dports/biology/ugene/ugene-40.1/src/plugins/external_tool_support/src/cufflinks/ |
| H A D | CuffdiffSupportTask.cpp | 131 …ask *t = new SaveDocumentTask(transcriptDoc.data(), transcriptDoc->getIOAdapterFactory(), transcri… in createTranscriptTask()
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| H A D | CuffmergeSupportTask.cpp | 130 SaveDocumentTask *task = new SaveDocumentTask(doc, doc->getIOAdapterFactory(), filePath); in createWriteTask()
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| /dports/biology/ugene/ugene-40.1/src/plugins/external_tool_support/src/mafft/ |
| H A D | MafftAddToAlignmentTask.cpp | 127 …cesDocumentTask = new SaveDocumentTask(tempDocument, tempDocument->getIOAdapterFactory(), tmpAdded… in prepare()
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| /dports/biology/ugene/ugene-40.1/src/corelibs/U2Gui/src/ |
| H A D | ProjectParsing.cpp | 144 QString adapterId = gbDoc->getIOAdapterFactory()->getAdapterId(); in saveProjectFile()
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| /dports/biology/ugene/ugene-40.1/src/ugeneui/src/project_support/ |
| H A D | ProjectTasksGui.cpp | 365 IOAdapterId id = doc->getIOAdapterFactory()->getAdapterId(); in report()
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| /dports/biology/ugene/ugene-40.1/src/ugeneui/src/project_view/ |
| H A D | ProjectViewImpl.cpp | 234 Task *saveDoc = new SaveDocumentTask(doc, doc->getIOAdapterFactory(), newFileUrl); in makeDecision()
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