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Searched refs:getIOAdapterRegistry (Results 1 – 25 of 123) sorted by relevance

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/dports/biology/ugene/ugene-40.1/src/corelibs/U2Formats/src/tasks/
H A DBgzipTask.cpp57 …SAFE_POINT_EXT(AppContext::getIOAdapterRegistry() != nullptr, setError(tr("IOAdapterRegistry is NU… in run()
58 …IOAdapterFactory *ioFactory = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(BaseIOAd… in run()
136 …SAFE_POINT_EXT(AppContext::getIOAdapterRegistry() != nullptr, setError(tr("IOAdapterRegistry is NU… in run()
138 …IOAdapterFactory *inFactory = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(BaseIOAd… in run()
140 …IOAdapterFactory *outFactory = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(BaseIOA… in run()
H A DExportTasks.cpp64 …IOAdapterFactory *iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(IOAdapterUtils… in run()
99 …IOAdapterFactory *iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(IOAdapterUtils… in run()
158 …IOAdapterFactory *iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(IOAdapterUtils… in run()
274 …IOAdapterFactory *iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(BaseIOAdapters… in prepare()
/dports/biology/ugene/ugene-40.1/src/corelibs/U2Formats/src/
H A DStreamSequenceWriter.cpp38 …IOAdapterFactory *iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(BaseIOAdapters… in StreamShortReadsWriter()
64 …IOAdapterFactory *iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(BaseIOAdapters… in StreamShortReadWriter()
103 …IOAdapterFactory *iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(BaseIOAdapters… in StreamGzippedShortReadWriter()
/dports/biology/ugene/ugene-40.1/src/corelibs/U2Core/src/util/
H A DIOAdapterUtils.cpp54 …IOAdapterFactory *iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(IOAdapterUtils… in readFileHeader()
98 iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(ioId); in open()
117 return AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(id); in get()
/dports/biology/ugene/ugene-40.1/src/plugins/dbi_bam/src/
H A DLoadBamInfoTask.cpp52 …IOAdapterFactory *factory = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(IOAdapterU… in run()
59 …IOAdapterFactory *factory = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(IOAdapterU… in run()
/dports/biology/ugene/ugene-40.1/src/plugins/weight_matrix/src/
H A DWeightMatrixIO.cpp307 …IOAdapterFactory *iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(IOAdapterUtils… in run()
312 …IOAdapterFactory *iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(IOAdapterUtils… in run()
320 …IOAdapterFactory *iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(IOAdapterUtils… in run()
325 …IOAdapterFactory *iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(IOAdapterUtils… in run()
/dports/biology/ugene/ugene-40.1/src/corelibs/U2Core/src/io/
H A DVirtualFileSystem.cpp56 …IOAdapterFactory *iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(IOAdapterUtils… in mapFile()
86 …IOAdapterFactory *iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(IOAdapterUtils… in mapBack()
/dports/biology/ugene/ugene-40.1/src/plugins/dna_export/src/
H A DImportQualityScoresTask.cpp48 …IOAdapterFactory *f = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(BaseIOAdapters::… in run()
120 …IOAdapterFactory *f = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(BaseIOAdapters::… in checkRawData()
/dports/biology/ugene/ugene-40.1/src/plugins/external_tool_support/src/peak2gene/
H A DPeak2GeneTask.cpp140 …QScopedPointer<IOAdapter> geneAdapter(AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(… in run()
150 …QScopedPointer<IOAdapter> peakAdapter(AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(… in run()
/dports/biology/ugene/ugene-40.1/src/plugins/workflow_designer/src/tasks/
H A DRenameChromosomeInVariationTask.cpp104 …IOAdapterFactory *ioAdapterFactory = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(I… in prepare()
132 …IOAdapterFactory *ioAdapterFactory = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(B… in initSaveTask()
/dports/biology/ugene/ugene-40.1/src/plugins_3rdparty/kalign/src/kalign_tests/
H A DKalignTests.cpp94 …IOAdapterFactory* iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(IOAdapterUtils… in prepare()
98 …iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(IOAdapterUtils::url2io(str_patFi… in prepare()
341 …IOAdapterFactory* iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(IOAdapterUtils… in prepare()
345 …iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(IOAdapterUtils::url2io(env->getV… in prepare()
/dports/biology/ugene/ugene-40.1/src/plugins/external_tool_support/src/utils/
H A DExportTasks.cpp73 …IOAdapterFactory *iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(IOAdapterUtils… in run()
113 …IOAdapterFactory *iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(IOAdapterUtils… in run()
/dports/biology/ugene/ugene-40.1/src/corelibs/U2Gui/src/
H A DObjectViewTasks.cpp113 …IOAdapterFactory *iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(IOAdapterUtils… in createDocumentAndAddToProject()
120 …IOAdapterFactory *ioAdapterFactory = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(B… in createDocumentAndAddToProject()
/dports/biology/ugene/ugene-40.1/src/plugins/enzymes/src/
H A DEnzymesIO.cpp49 IOAdapterFactory *iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(ioId); in readEnzymes()
102 IOAdapterFactory *iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(ioId); in writeEnzymes()
109 IOAdapterFactory *srciof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(srcioId); in writeEnzymes()
/dports/biology/ugene/ugene-40.1/src/corelibs/U2Core/src/tasks/
H A DConnectSharedDatabaseTask.cpp49 …IOAdapterFactory *ioAdapterFactory = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(B… in run()
H A DModifySequenceObjectTask.cpp89 …IOAdapterFactory *iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(IOAdapterUtils… in report()
153 IOAdapterRegistry *ioReg = AppContext::getIOAdapterRegistry(); in cloneSequenceAndAnnotations()
H A DLoadDocumentTask.cpp259 …IOAdapterFactory *iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(IOAdapterUtils… in getDefaultLoadDocTask()
275 …IOAdapterFactory *iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(IOAdapterUtils… in getCommonLoadDocTask()
344 …SAFE_POINT_EXT(AppContext::getIOAdapterRegistry() != nullptr, os.setError("IOAdapterRegistry is NU… in loadMulti()
345 …IOAdapterFactory *factory = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(IOAdapterU… in loadMulti()
H A DLoadRemoteDocumentTask.cpp138 …IOAdapterFactory *iow = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(BaseIOAdapters… in initLoadDocumentTask()
166 …IOAdapterFactory *iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(IOAdapterUtils… in createLoadedDocument()
194 …IOAdapterFactory *iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(BaseIOAdapters… in prepare()
195 …IOAdapterFactory *iow = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(BaseIOAdapters… in prepare()
/dports/biology/ugene/ugene-40.1/src/plugins/external_tool_support/src/cufflinks/
H A DCuffmergeSupportTask.cpp192 …IOAdapterFactory *iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(BaseIOAdapters… in createLoadResultDocumentTask()
211 …IOAdapterFactory *iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(BaseIOAdapters… in prepareDocument()
/dports/biology/ugene/ugene-40.1/src/plugins/external_tool_support/src/macs/
H A DMACSTask.cpp108 … AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(BaseIOAdapters::LOCAL_FILE)); in onSubTaskFinished()
114 … AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(BaseIOAdapters::LOCAL_FILE)); in onSubTaskFinished()
/dports/biology/ugene/ugene-40.1/src/plugins/external_tool_support/src/blast_plus/
H A DBlastDBCmdSupportTask.cpp76 …IOAdapterFactory *iow = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(BaseIOAdapters… in onSubTaskFinished()
/dports/biology/ugene/ugene-40.1/src/plugins/workflow_designer/src/library/
H A DReadVariationWorker.cpp117 …IOAdapterFactory *iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(IOAdapterUtils… in prepare()
150 …IOAdapterFactory *iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(IOAdapterUtils… in run()
/dports/biology/ugene/ugene-40.1/src/plugins/external_tool_support/src/tcoffee/
H A DTCoffeeSupportTask.cpp196 …IOAdapterFactory *iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(BaseIOAdapters… in onSubTaskFinished()
325 …IOAdapterFactory *iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(IOAdapterUtils… in prepare()
360 …AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(IOAdapterUtils::url2io(settings.output… in onSubTaskFinished()
/dports/biology/ugene/ugene-40.1/src/plugins/external_tool_support/src/clustalw/
H A DClustalWSupportTask.cpp217 … AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(BaseIOAdapters::LOCAL_FILE)); in onSubTaskFinished()
346 …IOAdapterFactory *iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(IOAdapterUtils… in prepare()
378 …AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(IOAdapterUtils::url2io(settings.output… in onSubTaskFinished()
/dports/biology/ugene/ugene-40.1/src/corelibs/U2Gui/src/util/
H A DExportObjectUtils.cpp135 IOAdapterRegistry *ioar = AppContext::getIOAdapterRegistry(); in export2Document()
171 IOAdapterFactory *iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById( in saveAnnotationsTask()

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