/dports/biology/ugene/ugene-40.1/src/corelibs/U2Formats/src/tasks/ |
H A D | BgzipTask.cpp | 57 …SAFE_POINT_EXT(AppContext::getIOAdapterRegistry() != nullptr, setError(tr("IOAdapterRegistry is NU… in run() 58 …IOAdapterFactory *ioFactory = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(BaseIOAd… in run() 136 …SAFE_POINT_EXT(AppContext::getIOAdapterRegistry() != nullptr, setError(tr("IOAdapterRegistry is NU… in run() 138 …IOAdapterFactory *inFactory = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(BaseIOAd… in run() 140 …IOAdapterFactory *outFactory = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(BaseIOA… in run()
|
H A D | ExportTasks.cpp | 64 …IOAdapterFactory *iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(IOAdapterUtils… in run() 99 …IOAdapterFactory *iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(IOAdapterUtils… in run() 158 …IOAdapterFactory *iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(IOAdapterUtils… in run() 274 …IOAdapterFactory *iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(BaseIOAdapters… in prepare()
|
/dports/biology/ugene/ugene-40.1/src/corelibs/U2Formats/src/ |
H A D | StreamSequenceWriter.cpp | 38 …IOAdapterFactory *iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(BaseIOAdapters… in StreamShortReadsWriter() 64 …IOAdapterFactory *iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(BaseIOAdapters… in StreamShortReadWriter() 103 …IOAdapterFactory *iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(BaseIOAdapters… in StreamGzippedShortReadWriter()
|
/dports/biology/ugene/ugene-40.1/src/corelibs/U2Core/src/util/ |
H A D | IOAdapterUtils.cpp | 54 …IOAdapterFactory *iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(IOAdapterUtils… in readFileHeader() 98 iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(ioId); in open() 117 return AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(id); in get()
|
/dports/biology/ugene/ugene-40.1/src/plugins/dbi_bam/src/ |
H A D | LoadBamInfoTask.cpp | 52 …IOAdapterFactory *factory = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(IOAdapterU… in run() 59 …IOAdapterFactory *factory = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(IOAdapterU… in run()
|
/dports/biology/ugene/ugene-40.1/src/plugins/weight_matrix/src/ |
H A D | WeightMatrixIO.cpp | 307 …IOAdapterFactory *iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(IOAdapterUtils… in run() 312 …IOAdapterFactory *iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(IOAdapterUtils… in run() 320 …IOAdapterFactory *iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(IOAdapterUtils… in run() 325 …IOAdapterFactory *iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(IOAdapterUtils… in run()
|
/dports/biology/ugene/ugene-40.1/src/corelibs/U2Core/src/io/ |
H A D | VirtualFileSystem.cpp | 56 …IOAdapterFactory *iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(IOAdapterUtils… in mapFile() 86 …IOAdapterFactory *iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(IOAdapterUtils… in mapBack()
|
/dports/biology/ugene/ugene-40.1/src/plugins/dna_export/src/ |
H A D | ImportQualityScoresTask.cpp | 48 …IOAdapterFactory *f = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(BaseIOAdapters::… in run() 120 …IOAdapterFactory *f = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(BaseIOAdapters::… in checkRawData()
|
/dports/biology/ugene/ugene-40.1/src/plugins/external_tool_support/src/peak2gene/ |
H A D | Peak2GeneTask.cpp | 140 …QScopedPointer<IOAdapter> geneAdapter(AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(… in run() 150 …QScopedPointer<IOAdapter> peakAdapter(AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(… in run()
|
/dports/biology/ugene/ugene-40.1/src/plugins/workflow_designer/src/tasks/ |
H A D | RenameChromosomeInVariationTask.cpp | 104 …IOAdapterFactory *ioAdapterFactory = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(I… in prepare() 132 …IOAdapterFactory *ioAdapterFactory = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(B… in initSaveTask()
|
/dports/biology/ugene/ugene-40.1/src/plugins_3rdparty/kalign/src/kalign_tests/ |
H A D | KalignTests.cpp | 94 …IOAdapterFactory* iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(IOAdapterUtils… in prepare() 98 …iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(IOAdapterUtils::url2io(str_patFi… in prepare() 341 …IOAdapterFactory* iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(IOAdapterUtils… in prepare() 345 …iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(IOAdapterUtils::url2io(env->getV… in prepare()
|
/dports/biology/ugene/ugene-40.1/src/plugins/external_tool_support/src/utils/ |
H A D | ExportTasks.cpp | 73 …IOAdapterFactory *iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(IOAdapterUtils… in run() 113 …IOAdapterFactory *iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(IOAdapterUtils… in run()
|
/dports/biology/ugene/ugene-40.1/src/corelibs/U2Gui/src/ |
H A D | ObjectViewTasks.cpp | 113 …IOAdapterFactory *iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(IOAdapterUtils… in createDocumentAndAddToProject() 120 …IOAdapterFactory *ioAdapterFactory = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(B… in createDocumentAndAddToProject()
|
/dports/biology/ugene/ugene-40.1/src/plugins/enzymes/src/ |
H A D | EnzymesIO.cpp | 49 IOAdapterFactory *iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(ioId); in readEnzymes() 102 IOAdapterFactory *iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(ioId); in writeEnzymes() 109 IOAdapterFactory *srciof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(srcioId); in writeEnzymes()
|
/dports/biology/ugene/ugene-40.1/src/corelibs/U2Core/src/tasks/ |
H A D | ConnectSharedDatabaseTask.cpp | 49 …IOAdapterFactory *ioAdapterFactory = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(B… in run()
|
H A D | ModifySequenceObjectTask.cpp | 89 …IOAdapterFactory *iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(IOAdapterUtils… in report() 153 IOAdapterRegistry *ioReg = AppContext::getIOAdapterRegistry(); in cloneSequenceAndAnnotations()
|
H A D | LoadDocumentTask.cpp | 259 …IOAdapterFactory *iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(IOAdapterUtils… in getDefaultLoadDocTask() 275 …IOAdapterFactory *iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(IOAdapterUtils… in getCommonLoadDocTask() 344 …SAFE_POINT_EXT(AppContext::getIOAdapterRegistry() != nullptr, os.setError("IOAdapterRegistry is NU… in loadMulti() 345 …IOAdapterFactory *factory = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(IOAdapterU… in loadMulti()
|
H A D | LoadRemoteDocumentTask.cpp | 138 …IOAdapterFactory *iow = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(BaseIOAdapters… in initLoadDocumentTask() 166 …IOAdapterFactory *iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(IOAdapterUtils… in createLoadedDocument() 194 …IOAdapterFactory *iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(BaseIOAdapters… in prepare() 195 …IOAdapterFactory *iow = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(BaseIOAdapters… in prepare()
|
/dports/biology/ugene/ugene-40.1/src/plugins/external_tool_support/src/cufflinks/ |
H A D | CuffmergeSupportTask.cpp | 192 …IOAdapterFactory *iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(BaseIOAdapters… in createLoadResultDocumentTask() 211 …IOAdapterFactory *iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(BaseIOAdapters… in prepareDocument()
|
/dports/biology/ugene/ugene-40.1/src/plugins/external_tool_support/src/macs/ |
H A D | MACSTask.cpp | 108 … AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(BaseIOAdapters::LOCAL_FILE)); in onSubTaskFinished() 114 … AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(BaseIOAdapters::LOCAL_FILE)); in onSubTaskFinished()
|
/dports/biology/ugene/ugene-40.1/src/plugins/external_tool_support/src/blast_plus/ |
H A D | BlastDBCmdSupportTask.cpp | 76 …IOAdapterFactory *iow = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(BaseIOAdapters… in onSubTaskFinished()
|
/dports/biology/ugene/ugene-40.1/src/plugins/workflow_designer/src/library/ |
H A D | ReadVariationWorker.cpp | 117 …IOAdapterFactory *iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(IOAdapterUtils… in prepare() 150 …IOAdapterFactory *iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(IOAdapterUtils… in run()
|
/dports/biology/ugene/ugene-40.1/src/plugins/external_tool_support/src/tcoffee/ |
H A D | TCoffeeSupportTask.cpp | 196 …IOAdapterFactory *iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(BaseIOAdapters… in onSubTaskFinished() 325 …IOAdapterFactory *iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(IOAdapterUtils… in prepare() 360 …AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(IOAdapterUtils::url2io(settings.output… in onSubTaskFinished()
|
/dports/biology/ugene/ugene-40.1/src/plugins/external_tool_support/src/clustalw/ |
H A D | ClustalWSupportTask.cpp | 217 … AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(BaseIOAdapters::LOCAL_FILE)); in onSubTaskFinished() 346 …IOAdapterFactory *iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(IOAdapterUtils… in prepare() 378 …AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById(IOAdapterUtils::url2io(settings.output… in onSubTaskFinished()
|
/dports/biology/ugene/ugene-40.1/src/corelibs/U2Gui/src/util/ |
H A D | ExportObjectUtils.cpp | 135 IOAdapterRegistry *ioar = AppContext::getIOAdapterRegistry(); in export2Document() 171 IOAdapterFactory *iof = AppContext::getIOAdapterRegistry()->getIOAdapterFactoryById( in saveAnnotationsTask()
|