Searched refs:getLambdaConventionValency (Results 1 – 9 of 9) sorted by relevance
494 …tExpectedValency = (a.getLambdaConventionValency() ==null ? ValencyChecker.getDefaultValency(chemE… in applyUnlocantedChargeModification()
317 if (a.getLambdaConventionValency() != null) { in getMaximumValency()318 maxVal = a.getLambdaConventionValency() + a.getProtonsExplicitlyAddedOrRemoved(); in getMaximumValency()
493 Integer getLambdaConventionValency() { in getLambdaConventionValency() method in Atom
941 if (atom.getLambdaConventionValency()!=null){//corrects valency for phosphin/arsin/stibin in removeTerminalOxygen()942 atom.setLambdaConventionValency(atom.getLambdaConventionValency()-desiredBondOrder); in removeTerminalOxygen()
383 newAtom.setLambdaConventionValency(atom.getLambdaConventionValency()); in copyAndRelabelFragment()
723 …if (atom.getProperty(Atom.SMILES_HYDROGEN_COUNT) != null && atom.getLambdaConventionValency() == n… in build()
651 …if (atomToAddOxideTo.getLambdaConventionValency()==null || !ValencyChecker.checkValencyAvailableFo… in formAppropriateBondToOxideAndAdjustCharges()2236 …if (connectedAtom.getLambdaConventionValency()!=null && connectedAtom.getLambdaConventionValency()… in processSpecialCases()
1363 if (a.getLambdaConventionValency() != null) { in getLambdaValencyOrHwValencyOrMaxValIfCharged()1364 return a.getLambdaConventionValency() + a.getProtonsExplicitlyAddedOrRemoved(); in getLambdaValencyOrHwValencyOrMaxValIfCharged()
402 int lambdaConvent =atomList.get(0).getLambdaConventionValency(); in hydrogenHandling11()