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/dports/science/cdk/cdk-cdk-2.3/tool/formula/src/test/java/org/openscience/cdk/formula/
H A DIsotopePatternManipulatorTest.java43 Assert.assertEquals(156.07770, listISO.get(0).getMass(), 0.00001); in testNormalize_IsotopePattern()
44 Assert.assertEquals(157.08059, listISO.get(1).getMass(), 0.00001); in testNormalize_IsotopePattern()
45 Assert.assertEquals(157.07503, listISO.get(2).getMass(), 0.00001); in testNormalize_IsotopePattern()
46 Assert.assertEquals(158.08135, listISO.get(3).getMass(), 0.00001); in testNormalize_IsotopePattern()
69 Assert.assertEquals(156.07770, listISO.get(0).getMass(), 0.00001); in testSortByIntensity_IsotopePattern()
70 Assert.assertEquals(158.08135, listISO.get(1).getMass(), 0.00001); in testSortByIntensity_IsotopePattern()
71 Assert.assertEquals(157.08059, listISO.get(2).getMass(), 0.00001); in testSortByIntensity_IsotopePattern()
72 Assert.assertEquals(157.07503, listISO.get(3).getMass(), 0.00001); in testSortByIntensity_IsotopePattern()
100 Assert.assertEquals(156.07770, listISO.get(0).getMass(), 0.00001); in testSortAndNormalizedByIntensity_IsotopePattern()
101 Assert.assertEquals(158.08135, listISO.get(1).getMass(), 0.00001); in testSortAndNormalizedByIntensity_IsotopePattern()
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H A DIsotopePatternGeneratorTest.java143 Assert.assertEquals(massResults[0], isoPattern.getIsotope(0).getMass(), 0.01); in testCalculateIsotopesAllBromine()
144 Assert.assertEquals(massResults[1], isoPattern.getIsotope(1).getMass(), 0.01); in testCalculateIsotopesAllBromine()
145 Assert.assertEquals(massResults[2], isoPattern.getIsotope(2).getMass(), 0.01); in testCalculateIsotopesAllBromine()
175 Assert.assertEquals(massResults[0], isoPattern.getIsotope(0).getMass(), 0.01); in testCalculateIsotopesIodemethylidyne()
176 Assert.assertEquals(massResults[1], isoPattern.getIsotope(1).getMass(), 0.01); in testCalculateIsotopesIodemethylidyne()
202 Assert.assertEquals(massResults[0], isoPattern.getIsotope(0).getMass(), 0.01); in testCalculateIsotopesnCarbono()
203 Assert.assertEquals(massResults[1], isoPattern.getIsotope(1).getMass(), 0.01); in testCalculateIsotopesnCarbono()
204 Assert.assertEquals(massResults[2], isoPattern.getIsotope(2).getMass(), 0.01); in testCalculateIsotopesnCarbono()
276 Assert.assertTrue(isos.getIsotope(i).getMass() > 120085); in testCalculateIsotopesC10000()
319 Assert.assertNotEquals(ip1.getIsotope(0).getMass(), ip2.getIsotope(0).getMass()); in testGetIsotopes_IMolecularFormula_Charged()
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H A DIsotopePatternTest.java156 Assert.assertEquals(156.07770, clone.getMonoIsotope().getMass(), 0.001); in testClone()
157 Assert.assertEquals(156.07770, clone.getIsotopes().get(0).getMass(), 0.001); in testClone()
158 Assert.assertEquals(157.07503, clone.getIsotopes().get(1).getMass(), 0.001); in testClone()
159 Assert.assertEquals(157.08059, clone.getIsotopes().get(2).getMass(), 0.001); in testClone()
160 Assert.assertEquals(158.08135, clone.getIsotopes().get(3).getMass(), 0.001); in testClone()
H A DIsotopeContainerTest.java66 Assert.assertEquals(mass, isoC.getMass(), 0.001); in testIsotopeContainer_double_double()
130 Assert.assertEquals(mass, isoC.getMass(), 0.001); in testGetMass()
163 Assert.assertEquals(mass, clone.getMass(), 0.001); in testClone()
/dports/cad/impact/Impact/src/run/constraints/
H A DRigidBody.java255 pos = master_node.getPos().times(master_node.getMass()); in setInitialConditions()
256 mass = master_node.getMass(); in setInitialConditions()
260 pos.plusEquals(nod.getPos().times(nod.getMass())); in setInitialConditions()
261 mass += nod.getMass(); in setInitialConditions()
279 master_node.addMass(nod.getMass()); in setInitialConditions()
323 inertia.set(0, 1, master_node.getMass() * (vx + vy)); // Ixy in setInitialConditions()
324 inertia.set(1, 0, master_node.getMass() * (vx + vy)); // Iyx in setInitialConditions()
325 inertia.set(1, 2, master_node.getMass() * (vy + vz)); // Iyz in setInitialConditions()
326 inertia.set(2, 1, master_node.getMass() * (vy + vz)); // Izy in setInitialConditions()
327 inertia.set(2, 0, master_node.getMass() * (vx + vz)); // Ixz in setInitialConditions()
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/dports/cad/impact/Impact/bin_cluster/genjpsource/run/constraints/
H A DRigidBody.java221 pos = this.master_node.getPos().times(this.master_node.getMass()); in setInitialConditions()
222 mass = this.master_node.getMass(); in setInitialConditions()
225 pos.plusEquals(nod.getPos().times(nod.getMass())); in setInitialConditions()
226 mass += nod.getMass(); in setInitialConditions()
236 this.master_node.addMass(nod.getMass()); in setInitialConditions()
259 inertia.set(0, 1, this.master_node.getMass() * (vx + vy)); in setInitialConditions()
260 inertia.set(1, 0, this.master_node.getMass() * (vx + vy)); in setInitialConditions()
261 inertia.set(1, 2, this.master_node.getMass() * (vy + vz)); in setInitialConditions()
262 inertia.set(2, 1, this.master_node.getMass() * (vy + vz)); in setInitialConditions()
263 inertia.set(2, 0, this.master_node.getMass() * (vx + vz)); in setInitialConditions()
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/dports/science/cdk/cdk-cdk-2.3/tool/formula/src/main/java/org/openscience/cdk/formula/
H A DIsotopePatternSimilarity.java66 double mass = isoC.getMass(); in compare()
86 diffMass = isoContainer.getMass() - iso2.getIsotopes().get(closestDp).getMass(); in compare()
115 … double tempDiff = Math.abs((isoContainer.getMass()) - pattern.getIsotopes().get(i).getMass()); in getClosestDataDiff()
116 if (tempDiff <= (tolerance_ppm / isoContainer.getMass()) && tempDiff < diff) { in getClosestDataDiff()
H A DIsotopePatternGenerator.java176 if (Math.abs(container.getMass() - mass) <= treshhold) { in findExisting()
217 double mass = container.getMass() + other.getMass(); in calculateAbundanceAndMass()
224 existing.setMass((existing.getMass()*existing.getIntensity() + in calculateAbundanceAndMass()
H A DIsotopeContainer.java121 public double getMass() { in getMass() method in IsotopeContainer
144 isoClone.setMass(getMass()); in clone()
/dports/science/votca/votca-2021.2-18560-gfbe18d971/csg/src/tests/
H A Dtest_triplelist.cc85 BOOST_CHECK_CLOSE(triplefront->bead1()->getMass(), 1.0, 1e-5);
86 BOOST_CHECK_CLOSE(triplefront->bead2()->getMass(), 2.0, 1e-5);
87 BOOST_CHECK_CLOSE(triplefront->bead3()->getMass(), 3.0, 1e-5);
94 BOOST_CHECK_CLOSE(tripleback->bead1()->getMass(), 1.0, 1e-5);
95 BOOST_CHECK_CLOSE(tripleback->bead2()->getMass(), 2.0, 1e-5);
96 BOOST_CHECK_CLOSE(tripleback->bead3()->getMass(), 3.0, 1e-5);
H A Dtest_basebead.cc50 BOOST_CHECK_CLOSE(basebead.getMass(), 0.0, 1e-5); in BOOST_AUTO_TEST_CASE()
61 BOOST_CHECK_CLOSE(basebead.getMass(), 1.0, 1e-5); in BOOST_AUTO_TEST_CASE()
/dports/science/votca/votca-2021.2-18560-gfbe18d971/csg/csg-da5c1dc/src/tests/
H A Dtest_triplelist.cc85 BOOST_CHECK_CLOSE(triplefront->bead1()->getMass(), 1.0, 1e-5); in BOOST_AUTO_TEST_CASE()
86 BOOST_CHECK_CLOSE(triplefront->bead2()->getMass(), 2.0, 1e-5); in BOOST_AUTO_TEST_CASE()
87 BOOST_CHECK_CLOSE(triplefront->bead3()->getMass(), 3.0, 1e-5); in BOOST_AUTO_TEST_CASE()
94 BOOST_CHECK_CLOSE(tripleback->bead1()->getMass(), 1.0, 1e-5); in BOOST_AUTO_TEST_CASE()
95 BOOST_CHECK_CLOSE(tripleback->bead2()->getMass(), 2.0, 1e-5); in BOOST_AUTO_TEST_CASE()
96 BOOST_CHECK_CLOSE(tripleback->bead3()->getMass(), 3.0, 1e-5); in BOOST_AUTO_TEST_CASE()
H A Dtest_basebead.cc50 BOOST_CHECK_CLOSE(basebead.getMass(), 0.0, 1e-5); in BOOST_AUTO_TEST_CASE()
61 BOOST_CHECK_CLOSE(basebead.getMass(), 1.0, 1e-5); in BOOST_AUTO_TEST_CASE()
/dports/misc/dartsim/dart-6.11.1/dart/dynamics/
H A DPointMass.cpp215 double PointMass::getMass() const in getMass() function in dart::dynamics::PointMass
773 mF.noalias() = getMass() * getBodyAcceleration(); in updateTransmittedForceID()
775 getMass() * getBodyVelocity()) in updateTransmittedForceID()
779 mF -= getMass() in updateTransmittedForceID()
793 mPsi = 1.0 / getMass(); in updateArtInertiaFD()
805 mPi = getMass() - getMass() * getMass() * mPsi; in updateArtInertiaFD()
806 mImplicitPi = getMass() - getMass() * getMass() * mImplicitPsi; in updateArtInertiaFD()
828 getMass() * getBodyVelocity()) in updateBiasForceFD()
833 mB -= getMass() in updateBiasForceFD()
888 mF.noalias() += getMass() * getBodyAcceleration(); in updateTransmittedForce()
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/dports/science/plumed/plumed2-2.7.2/src/colvar/
H A DGyration.cpp172 totmass+=getMass(i); in calculate()
173 com+=getMass(i)*getPosition(i); in calculate()
191 rgyr += getMass(i)*diff.modulo2(); in calculate()
192 derivatives[i] = diff*getMass(i); in calculate()
223 gyr_tens[0][0]+=getMass(i)*diff[0]*diff[0]; in calculate()
224 gyr_tens[1][1]+=getMass(i)*diff[1]*diff[1]; in calculate()
225 gyr_tens[2][2]+=getMass(i)*diff[2]*diff[2]; in calculate()
226 gyr_tens[0][1]+=getMass(i)*diff[0]*diff[1]; in calculate()
227 gyr_tens[0][2]+=getMass(i)*diff[0]*diff[2]; in calculate()
228 gyr_tens[1][2]+=getMass(i)*diff[1]*diff[2]; in calculate()
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/dports/science/opensim-core/opensim-core-4.1/OpenSim/Simulation/Test/
H A DtestPrescribedForce.cpp156 ball.setMass(ballMass.getMass()); in testPrescribedForce()
219 accel.push_back(gravity_vec+Vec3(1.0/ballMass.getMass(), 0, 0)); in testForceAtOrigin()
222 accel.push_back(gravity_vec+Vec3(0.5/ballMass.getMass(), 0.5/ballMass.getMass(), 0)); in testForceAtOrigin()
225 accel.push_back(gravity_vec+Vec3(0, 1/ballMass.getMass(), 0)); in testForceAtOrigin()
245 accel.push_back(gravity_vec+Vec3(1.0/ballMass.getMass(), 0, 0)); in testForceAtPoint()
/dports/science/cdk/cdk-cdk-2.3/descriptor/qsar/src/main/java/org/openscience/cdk/tools/
H A DAtomicProperties.java97 public double getMass(String symbol) { in getMass() method in AtomicProperties
102 return this.getMass(symbol) / this.getMass("C"); in getNormalizedMass()
/dports/science/opensim-core/opensim-core-4.1/OpenSim/Simulation/SimbodyEngine/Test/
H A DtestJoints.cpp555 OpenSim::Body osim_shank("shank", tibiaMass.getMass(), in testCustomVsUniversalPin()
681 OpenSim::Body osim_thigh("thigh", femurMass.getMass(), in testCustomJointVsFunctionBased()
698 OpenSim::Body osim_shank("shank", tibiaMass.getMass(), in testCustomJointVsFunctionBased()
940 OpenSim::Body osim_foot("foot", footMass.getMass(), in testWeldJoint()
949 OpenSim::Body osim_toes ("toes", toesMass.getMass(), in testWeldJoint()
1864 OpenSim::Body thigh2("thigh2", femurMass.getMass(), in testCustomVsCompoundJoint()
1877 OpenSim::Body shank2("shank2", tibiaMass.getMass(), in testCustomVsCompoundJoint()
2068 auto thigh = new Body("thigh", femurMass.getMass(), in testAutomaticJointReversal()
2276 OpenSim::Body thigh("thigh", femurMass.getMass(), in testAutomaticLoopJointBreaker()
2299 Body shank("shank", tibiaMass.getMass(), in testAutomaticLoopJointBreaker()
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/dports/science/votca/votca-2021.2-18560-gfbe18d971/csg/src/csgapps/radii/
H A Dradii.cc109 M += mol.getBead(i)->getMass(); in EvalConfiguration()
110 cm += mol.getBead(i)->getPos() * mol.getBead(i)->getMass(); in EvalConfiguration()
117 r_gyr_m_sq += mol.getBead(i)->getMass() * r_ij.squaredNorm(); in EvalConfiguration()
/dports/science/votca/votca-2021.2-18560-gfbe18d971/csg/csg-da5c1dc/src/csgapps/radii/
H A Dradii.cc109 M += mol.getBead(i)->getMass(); in EvalConfiguration()
110 cm += mol.getBead(i)->getPos() * mol.getBead(i)->getMass(); in EvalConfiguration()
117 r_gyr_m_sq += mol.getBead(i)->getMass() * r_ij.squaredNorm(); in EvalConfiguration()
/dports/science/plumed/plumed2-2.7.2/src/vatom/
H A DCenter.cpp208 if(std::isnan(getMass(i))) { in calculate()
219 for(unsigned i=0; i<getNumberOfAtoms(); i++) mass+=getMass(i); in calculate()
239 if(weight_mass) w=getMass(i)/mass; in calculate()
293 if(weight_mass) w=getMass(i)/mass; in calculate()
/dports/science/gabedit/GabeditSrc251_300720/src/Symmetry/
H A DSAtom.c29 static gdouble getMass(SAtom* atom);
49 e.getMass = getMass; in newSAtom()
89 static gdouble getMass(SAtom* atom) in getMass() function
/dports/games/chapping/chapping-0.43-source/game/
H A Dball.cpp115 float k=mass*vel.module()-c.b->getMass()*c.b->getVel().module(); in getCollision()
123 float k=(cos_alpha)*c.a->getMass()/(c.b->getMass()); in getCollision()
H A Dcap.cpp118 float k=mass*vel.module()-c.b->getMass()*c.b->getVel().module(); in getCollision()
126 float k=(cos_alpha)*c.a->getMass()/(c.b->getMass()); in getCollision()
/dports/science/plumed/plumed2-2.7.2/src/tools/
H A DUnits.h100 const double & getMass()const;
134 const double & Units::getMass()const { in getMass() function

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