Searched refs:getPtnRate (Results 1 – 6 of 6) sorted by relevance
237 double RateMeyerDiscrete::getPtnRate(int ptn) { in getPtnRate() function in RateMeyerDiscrete238 if (!is_categorized) return RateMeyerHaeseler::getPtnRate(ptn); in getPtnRate()420 if (getPtnRate(i) < MAX_SITE_RATE) { in normalizeRates()421 sum += getPtnRate(i) * phylo_tree->aln->at(i).frequency; in normalizeRates()
66 virtual double getPtnRate(int ptn);
80 virtual double getPtnRate(int ptn);
158 virtual double getPtnRate(int ptn) { return 1.0; } in getPtnRate() function
129 double RateMeyerHaeseler::getPtnRate(int ptn) { in getPtnRate() function in RateMeyerHaeseler
118 …double trans = tree->getModelFactory()->computeTrans(value * site_rate->getPtnRate(i), state1, sta… in computeFunction()190 double rate_val = site_rate->getPtnRate(i); in computeFuncDerv()210 double rate_val = site_rate->getPtnRate(i); in computeFuncDerv()