| /dports/biology/iqtree/IQ-TREE-2.0.6/model/ |
| H A D | modelpomomixture.cpp | 153 ModelPoMo::getStateFrequency(at(m)->state_freq); in decomposeRateMatrix()
166 ModelPoMo::getStateFrequency(state_freq); in decomposeRateMatrix()
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| H A D | modelmixture.h | 133 virtual void getStateFrequency(double *state_freq, int mixture = 0);
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| H A D | modelsubst.h | 238 virtual void getStateFrequency(double *state_freq, int mixture = 0);
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| H A D | modelsubst.cpp | 122 void ModelSubst::getStateFrequency(double *state_freq, int mixture) { in getStateFrequency() function in ModelSubst
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| H A D | modelmarkov.h | 241 virtual void getStateFrequency(double *state_freq, int mixture = 0);
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| H A D | modelmixture.cpp | 1450 void ModelMixture::getStateFrequency(double *state_freq, int mixture) { in getStateFrequency() function in ModelMixture
1453 at(mixture)->getStateFrequency(state_freq); in getStateFrequency()
1463 at(i)->getStateFrequency(state_freq_class); in getStateFrequency()
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| H A D | modelgtr.cpp | 368 void ModelGTR::getStateFrequency(double *freq) { in getStateFrequency() function in ModelGTR
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| H A D | modelfactory.cpp | 550 modeli->getStateFrequency(state_freq); in ModelFactory()
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| H A D | modelmarkov.cpp | 676 void ModelMarkov::getStateFrequency(double *freq, int mixture) { in getStateFrequency() function in ModelMarkov
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| /dports/games/supertuxkart/SuperTuxKart-1.2-src/src/network/ |
| H A D | network_config.hpp | 283 int getStateFrequency() const { return m_state_frequency; } in getStateFrequency() function in NetworkConfig
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| H A D | rewind_manager.cpp | 91 NetworkConfig::get()->getStateFrequency(); in reset()
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| /dports/biology/iqtree/IQ-TREE-2.0.6/tree/ |
| H A D | phylotreesse.cpp | 650 model->getMutationModel()->getStateFrequency(state_freq, -1); in computePtnInvar()
1546 model->getStateFrequency(state_freq); in computeMarginalAncestralState()
1833 model->getStateFrequency(trans_mat); in computeAncestralLikelihood()
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| H A D | phylokernelnonrev.h | 619 model->getStateFrequency(state_freq, m);
656 model->getStateFrequency(lh_node, m);
1086 model->getStateFrequency(state_freq, m);
1108 model->getStateFrequency(lh_node, m);
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| H A D | phylokernelnonrev.cpp | 655 model->getStateFrequency(lh_node); in computeNonrevLikelihoodBranch()
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| H A D | iqtree.cpp | 1767 getModel()->getStateFrequency(state_freqs); in inputModelIQTree2PLL()
1792 getModel()->getStateFrequency(state_freqs); in inputModelIQTree2PLL()
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| H A D | phylokernelnew.h | 923 model->getStateFrequency(partial_lh_leaf + c*nstates, m); in computePartialInfo()
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| H A D | phylotree.cpp | 2328 model->getStateFrequency(tmp_state_freq); in computeBayesianBranchLength()
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| /dports/games/supertuxkart/SuperTuxKart-1.2-src/src/graphics/ |
| H A D | irr_driver.cpp | 2128 str, NetworkConfig::get()->getStateFrequency()), in renderNetworkDebug()
2136 NetworkConfig::get()->getStateFrequency()), background_rect, black, in renderNetworkDebug()
2144 NetworkConfig::get()->getStateFrequency()), background_rect, black, in renderNetworkDebug()
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| /dports/biology/iqtree/IQ-TREE-2.0.6/obsolete/ |
| H A D | ngs.cpp | 880 tree.getModel()->getStateFrequency(state_freq); in reportNGSAnalysis()
969 sum_tree.getModel()->getStateFrequency(rate_mat); in testSingleRateModel()
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| /dports/biology/iqtree/IQ-TREE-2.0.6/main/ |
| H A D | phyloanalysis.cpp | 364 m->getStateFrequency(state_freq); in reportModel()
406 m->getStateFrequency(state_freqs); in reportModel()
2948 iqtree.getModel()->getStateFrequency(state_freqs); in searchGAMMAInvarByRestarting()
2976 iqtree.getModel()->getStateFrequency(bestStateFreqs); in searchGAMMAInvarByRestarting()
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