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Searched refs:getStop (Results 1 – 25 of 118) sorted by relevance

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/dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/utils/
H A DGenomeLoc.java72 …meLoc getStopLocation() { return new GenomeLoc(getContig(),getContigIndex(),getStop(),getStop()); } in getStopLocation()
88 return getStop(); in getEnd()
153 Math.max( getStop(), that.getStop()) ); in merge()
184 Math.min( getStop(), that.getStop()) ); in intersect()
214 final int afterStop = this.getStop(); in subtract()
252 … n = new GenomeLoc(this.getContig(), getContigIndex(), that.getStop() + 1, this.getStop()); in subtract()
263 return onSameContig(that) && getStart() <= that.getStart() && getStop() >= that.getStop(); in containsP()
388 else if ( this.getStop() < that.getStop() ) { in compareTo()
390 } else if ( this.getStop() > that.getStop() ) { in compareTo()
461 …Contig(), a.contigIndex, Math.min(a.getStart(), b.getStart()), Math.max(a.getStop(), b.getStop())); in merge()
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H A DGenomeLocParser.java455 …OnContig(loc.getContig(), loc.getContigIndex(), loc.getStart() - padding, loc.getStop() + padding); in createPaddedGenomeLoc()
472 int start = loc.getStop() + 1; in createGenomeLocAtStop()
473 int stop = loc.getStop() + maxBasePairs; in createGenomeLocAtStop()
/dports/graphics/krita/krita-4.4.8/libs/flake/
H A DKoMeshPatchesRenderer.h74 QColor color0 = patch->getStop(SvgMeshPatch::Top).color;
346 SvgMeshStop f10 = patch0->getStop(SvgMeshPatch::Top); in derivativeX()
349 SvgMeshStop f11 = patch1->getStop(SvgMeshPatch::Top); in derivativeX()
370 SvgMeshStop f01 = patch0->getStop(SvgMeshPatch::Top); in derivativeY()
373 SvgMeshStop f11 = patch1->getStop(SvgMeshPatch::Top); in derivativeY()
393 SvgMeshStop f00 = patch0->getStop(SvgMeshPatch::Top); in derivativeEdgeBeginX()
413 SvgMeshStop f00 = patch0->getStop(SvgMeshPatch::Top); in derivativeEdgeBeginY()
433 SvgMeshStop f02 = patch1->getStop(SvgMeshPatch::Top); in derivativeEdgeEndX()
438 SvgMeshStop f01 = patch0->getStop(SvgMeshPatch::Top); in derivativeEdgeEndX()
494 SvgMeshStop f11 = patch->getStop(SvgMeshPatch::Top); in calculateAlpha()
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/dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/utils/
H A DGenomeLocParserUnitTest.java116 assertEquals(loc.getStop(), 5); in testContigHasColon()
123 assertEquals(loc.getStop(), 10); in testParseGoodString()
138 assertEquals(loc.getStop(), 100); in testCreateGenomeLoc1()
146 assertEquals(loc.getStop(), 1); in testCreateGenomeLoc1point5()
154 assertEquals(loc.getStop(), 100); in testCreateGenomeLoc2()
162 assertEquals(loc.getStop(), 1); in testCreateGenomeLoc3()
170 assertEquals(loc.getStop(), 1); in testCreateGenomeLoc4()
179 assertEquals(copy.getStop(), 100); in testCreateGenomeLoc5()
187 assertEquals(loc.getStop(), 10); // the size in testGenomeLocPlusSign()
378 Assert.assertEquals(loc.getStop(), start); in testParsingPositions()
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H A DGenomeLocSortedSetUnitTest.java112 assertEquals(loc.getStop(), 100); in mergingOverlappingBelow()
163 assertEquals(loc.getStop(), 100); in mergingOverlappingAbove()
189 assertTrue(loc.getStop() == 100); in deleteSomeByRegion()
207 assertTrue(loc.getStop() == 14); in deleteSuperRegion()
212 assertTrue(loc.getStop() == 100); in deleteSuperRegion()
288 assertTrue(loc.getStop() == GenomeLocSortedSetUnitTest.CHROMOSOME_SIZE); in fromSequenceDictionary()
319 …c spanning = genomeLocParser.createGenomeLocOnContig("2", regionStart - 10, region.getStop() + 10); in makeGetOverlappingTest()
322 …iddle_past = genomeLocParser.createGenomeLocOnContig("2", region.getStop()-1, region.getStop()+10); in makeGetOverlappingTest()
/dports/graphics/krita/krita-4.4.8/libs/flake/svg/
H A DSvgMeshArray.cpp98 start.setX(patch->getStop(SvgMeshPatch::Right).point.x()); in createDefaultMesh()
130 QColor color = getStop(SvgMeshPatch::Left, irow - 1, icol).color; in addPatch()
151 true, getStop(SvgMeshPatch::Bottom, irow, icol - 1).point); in addPatch()
165 true, getStop(SvgMeshPatch::Top, irow, icol).point); in addPatch()
168 QColor color = getStop(SvgMeshPatch::Bottom, irow, icol - 1).color; in addPatch()
185 SvgMeshStop node = patch->getStop(edge); in getStop()
195 return getStop(SvgMeshPatch::Left, row - 1, col); in getStop()
197 return getStop(SvgMeshPatch::Bottom, row, col - 1); in getStop()
203 SvgMeshStop SvgMeshArray::getStop(const SvgMeshPosition &pos) const in getStop() function in SvgMeshArray
205 return getStop(pos.segmentType, pos.row, pos.col); in getStop()
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H A DSvgMeshPatch.cpp223 QColor c1 = getStop(Top).color; in subdivideHorizontally()
224 QColor c2 = getStop(Right).color; in subdivideHorizontally()
225 QColor c3 = getStop(Bottom).color; in subdivideHorizontally()
226 QColor c4 = getStop(Left).color; in subdivideHorizontally()
270 QColor c1 = getStop(Top).color; in subdivideVertically()
271 QColor c2 = getStop(Right).color; in subdivideVertically()
272 QColor c3 = getStop(Bottom).color; in subdivideVertically()
273 QColor c4 = getStop(Left).color; in subdivideVertically()
356 QColor c1 = getStop(Top).color; in subdivide()
357 QColor c2 = getStop(Right).color; in subdivide()
[all …]
H A DSvgMeshArray.h66 SvgMeshStop getStop(const SvgMeshPatch::Type edge, const int row, const int col) const;
68 SvgMeshStop getStop(const SvgMeshPosition &pos) const;
/dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/tools/walkers/rnaseq/
H A DOverhangFixingManager.java260 final int overhang = splice.loc.getStop() - read.getStart() + 1; in fixSplit()
262 … clippedRead = ReadClipper.softClipByReadCoordinates(read, 0, splice.loc.getStop() - readLoc.getSt… in fixSplit()
267 final int overhang = readLoc.getStop() - splice.loc.getStart() + 1; in fixSplit()
283 …dLoc.getStart() <= spliceLoc.getStop() && readLoc.getStart() > spliceLoc.getStart() && readLoc.get… in isLeftOverhang()
294 …return readLoc.getStop() >= spliceLoc.getStart() && readLoc.getStop() < spliceLoc.getStop() && rea… in isRightOverhang()
489 …ence = referenceReader.getSubsequenceAt(loc.getContig(), loc.getStart(), loc.getStop()).getBases(); in initialize()
/dports/editors/libreoffice/libreoffice-7.2.6.2/drawinglayer/source/primitive2d/
H A Dwrongspellprimitive2d.cxx57 basegfx::B2DPoint aStop(getStop(), fRelativeUnderlineDistance); in create2DDecomposition()
91 && getStop() == rCompare.getStop() in operator ==()
/dports/editors/libreoffice6/libreoffice-6.4.7.2/drawinglayer/source/primitive2d/
H A Dwrongspellprimitive2d.cxx59 basegfx::B2DPoint aStop(getStop(), fRelativeUnderlineDistance); in create2DDecomposition()
93 && getStop() == rCompare.getStop() in operator ==()
/dports/games/libretro-scummvm/scummvm-7b1e929/engines/pegasus/
H A Denergymonitor.cpp125 setTime(getStop() - value); in setEnergyValue()
128 setTime(getStop() - value); in setEnergyValue()
165 if (currentTime == getStop()) { in timeChanged()
231 if (getStop() == 0) { in calcLevelRect()
235 r.left = r.right - r.width() * (kMaxJMPEnergy - getTime()) / getStop(); in calcLevelRect()
H A Dtimers.cpp147 return getTime() != getStop(); in isRunning()
169 TimeValue TimeBase::getStop(const TimeScale scale) const { in getStop() function in Pegasus::TimeBase
183 stopTime = getStop(scale); in getSegment()
415 return _fuseTimer.getStop() - _fuseTimer.getTime(); in getTimeRemaining()
/dports/games/scummvm/scummvm-2.5.1/engines/pegasus/
H A Denergymonitor.cpp125 setTime(getStop() - value); in setEnergyValue()
128 setTime(getStop() - value); in setEnergyValue()
165 if (currentTime == getStop()) { in timeChanged()
231 if (getStop() == 0) { in calcLevelRect()
235 r.left = r.right - r.width() * (kMaxJMPEnergy - getTime()) / getStop(); in calcLevelRect()
H A Dtimers.cpp147 return getTime() != getStop(); in isRunning()
169 TimeValue TimeBase::getStop(const TimeScale scale) const { in getStop() function in Pegasus::TimeBase
183 stopTime = getStop(scale); in getSegment()
411 return _fuseTimer.getStop() - _fuseTimer.getTime(); in getTimeRemaining()
/dports/devel/RStudio/rstudio-2021.09.1-372/src/gwt/src/org/rstudio/studio/client/rmarkdown/model/
H A DNotebookQueueUnit.java124 ranges.get(i).getStop() <= range.getStop()) in hasPendingRange()
150 if (i >= range.getStart() && i < range.getStop()) in linesFromRanges()
H A DNotebookExecRange.java36 public final native int getStop() /*-{ in getStop() method in NotebookExecRange
/dports/audio/rhvoice/RHVoice-1.2.4/src/third-party/cldr/tools/java/org/unicode/cldr/util/
H A DTabber.java100 int last = getStop(stops.size() - 1); in add()
106 public int getStop(int fieldNumber) { in getStop() method in Tabber.MonoTabber
121 int startPos = getStop(count - 1); in process_field()
122 int endPos = getStop(count) - minGap; in process_field()
/dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/tools/walkers/rnaseq/
H A DOverhangFixingManagerUnitTest.java73 final boolean isValidOverhang = readLoc.getStart() <= spliceLoc.getStop() && in testLeftOverhangs()
74 readLoc.getStop() > spliceLoc.getStop() && in testLeftOverhangs()
81 final boolean isValidOverhang = readLoc.getStop() >= spliceLoc.getStart() && in testRightOverhangs()
82 readLoc.getStop() < spliceLoc.getStop() && in testRightOverhangs()
/dports/math/primecount/primecount-7.2/lib/primesieve/include/primesieve/
H A DErat.hpp91 uint64_t getStop() const;
158 inline uint64_t Erat::getStop() const in getStop() function in primesieve::Erat
/dports/math/primesieve/primesieve-7.7/include/primesieve/
H A DErat.hpp91 uint64_t getStop() const;
158 inline uint64_t Erat::getStop() const in getStop() function in primesieve::Erat
/dports/databases/hsqldb/hsqldb-2.3.4/hsqldb/src/org/hsqldb/lib/tar/
H A DTarGenerator.java284 int stop = field.getStop(); in writeField()
305 int stop = field.getStop(); in clearField()
318 newValue, field.getStop() - field.getStart()), target); in writeField()
559 && (i < TarHeaderField.checksum.getStop())); in headerChecksum()
H A DTarHeaderField.java118 public int getStop() { return stop; } in getStop() method in TarHeaderField
/dports/math/primesieve/primesieve-7.7/test/
H A Dcount_primes1.cpp54 count += ps.countPrimes(ps.getStop() + 1, (uint64_t) pow(10.0, i)); in main()
/dports/math/primecount/primecount-7.2/lib/primesieve/test/
H A Dcount_primes1.cpp54 count += ps.countPrimes(ps.getStop() + 1, (uint64_t) pow(10.0, i)); in main()

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