/dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/utils/ |
H A D | GenomeLoc.java | 72 …meLoc getStopLocation() { return new GenomeLoc(getContig(),getContigIndex(),getStop(),getStop()); } in getStopLocation() 88 return getStop(); in getEnd() 153 Math.max( getStop(), that.getStop()) ); in merge() 184 Math.min( getStop(), that.getStop()) ); in intersect() 214 final int afterStop = this.getStop(); in subtract() 252 … n = new GenomeLoc(this.getContig(), getContigIndex(), that.getStop() + 1, this.getStop()); in subtract() 263 return onSameContig(that) && getStart() <= that.getStart() && getStop() >= that.getStop(); in containsP() 388 else if ( this.getStop() < that.getStop() ) { in compareTo() 390 } else if ( this.getStop() > that.getStop() ) { in compareTo() 461 …Contig(), a.contigIndex, Math.min(a.getStart(), b.getStart()), Math.max(a.getStop(), b.getStop())); in merge() [all …]
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H A D | GenomeLocParser.java | 455 …OnContig(loc.getContig(), loc.getContigIndex(), loc.getStart() - padding, loc.getStop() + padding); in createPaddedGenomeLoc() 472 int start = loc.getStop() + 1; in createGenomeLocAtStop() 473 int stop = loc.getStop() + maxBasePairs; in createGenomeLocAtStop()
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/dports/graphics/krita/krita-4.4.8/libs/flake/ |
H A D | KoMeshPatchesRenderer.h | 74 QColor color0 = patch->getStop(SvgMeshPatch::Top).color; 346 SvgMeshStop f10 = patch0->getStop(SvgMeshPatch::Top); in derivativeX() 349 SvgMeshStop f11 = patch1->getStop(SvgMeshPatch::Top); in derivativeX() 370 SvgMeshStop f01 = patch0->getStop(SvgMeshPatch::Top); in derivativeY() 373 SvgMeshStop f11 = patch1->getStop(SvgMeshPatch::Top); in derivativeY() 393 SvgMeshStop f00 = patch0->getStop(SvgMeshPatch::Top); in derivativeEdgeBeginX() 413 SvgMeshStop f00 = patch0->getStop(SvgMeshPatch::Top); in derivativeEdgeBeginY() 433 SvgMeshStop f02 = patch1->getStop(SvgMeshPatch::Top); in derivativeEdgeEndX() 438 SvgMeshStop f01 = patch0->getStop(SvgMeshPatch::Top); in derivativeEdgeEndX() 494 SvgMeshStop f11 = patch->getStop(SvgMeshPatch::Top); in calculateAlpha() [all …]
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/dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/utils/ |
H A D | GenomeLocParserUnitTest.java | 116 assertEquals(loc.getStop(), 5); in testContigHasColon() 123 assertEquals(loc.getStop(), 10); in testParseGoodString() 138 assertEquals(loc.getStop(), 100); in testCreateGenomeLoc1() 146 assertEquals(loc.getStop(), 1); in testCreateGenomeLoc1point5() 154 assertEquals(loc.getStop(), 100); in testCreateGenomeLoc2() 162 assertEquals(loc.getStop(), 1); in testCreateGenomeLoc3() 170 assertEquals(loc.getStop(), 1); in testCreateGenomeLoc4() 179 assertEquals(copy.getStop(), 100); in testCreateGenomeLoc5() 187 assertEquals(loc.getStop(), 10); // the size in testGenomeLocPlusSign() 378 Assert.assertEquals(loc.getStop(), start); in testParsingPositions() [all …]
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H A D | GenomeLocSortedSetUnitTest.java | 112 assertEquals(loc.getStop(), 100); in mergingOverlappingBelow() 163 assertEquals(loc.getStop(), 100); in mergingOverlappingAbove() 189 assertTrue(loc.getStop() == 100); in deleteSomeByRegion() 207 assertTrue(loc.getStop() == 14); in deleteSuperRegion() 212 assertTrue(loc.getStop() == 100); in deleteSuperRegion() 288 assertTrue(loc.getStop() == GenomeLocSortedSetUnitTest.CHROMOSOME_SIZE); in fromSequenceDictionary() 319 …c spanning = genomeLocParser.createGenomeLocOnContig("2", regionStart - 10, region.getStop() + 10); in makeGetOverlappingTest() 322 …iddle_past = genomeLocParser.createGenomeLocOnContig("2", region.getStop()-1, region.getStop()+10); in makeGetOverlappingTest()
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/dports/graphics/krita/krita-4.4.8/libs/flake/svg/ |
H A D | SvgMeshArray.cpp | 98 start.setX(patch->getStop(SvgMeshPatch::Right).point.x()); in createDefaultMesh() 130 QColor color = getStop(SvgMeshPatch::Left, irow - 1, icol).color; in addPatch() 151 true, getStop(SvgMeshPatch::Bottom, irow, icol - 1).point); in addPatch() 165 true, getStop(SvgMeshPatch::Top, irow, icol).point); in addPatch() 168 QColor color = getStop(SvgMeshPatch::Bottom, irow, icol - 1).color; in addPatch() 185 SvgMeshStop node = patch->getStop(edge); in getStop() 195 return getStop(SvgMeshPatch::Left, row - 1, col); in getStop() 197 return getStop(SvgMeshPatch::Bottom, row, col - 1); in getStop() 203 SvgMeshStop SvgMeshArray::getStop(const SvgMeshPosition &pos) const in getStop() function in SvgMeshArray 205 return getStop(pos.segmentType, pos.row, pos.col); in getStop() [all …]
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H A D | SvgMeshPatch.cpp | 223 QColor c1 = getStop(Top).color; in subdivideHorizontally() 224 QColor c2 = getStop(Right).color; in subdivideHorizontally() 225 QColor c3 = getStop(Bottom).color; in subdivideHorizontally() 226 QColor c4 = getStop(Left).color; in subdivideHorizontally() 270 QColor c1 = getStop(Top).color; in subdivideVertically() 271 QColor c2 = getStop(Right).color; in subdivideVertically() 272 QColor c3 = getStop(Bottom).color; in subdivideVertically() 273 QColor c4 = getStop(Left).color; in subdivideVertically() 356 QColor c1 = getStop(Top).color; in subdivide() 357 QColor c2 = getStop(Right).color; in subdivide() [all …]
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H A D | SvgMeshArray.h | 66 SvgMeshStop getStop(const SvgMeshPatch::Type edge, const int row, const int col) const; 68 SvgMeshStop getStop(const SvgMeshPosition &pos) const;
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/dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/tools/walkers/rnaseq/ |
H A D | OverhangFixingManager.java | 260 final int overhang = splice.loc.getStop() - read.getStart() + 1; in fixSplit() 262 … clippedRead = ReadClipper.softClipByReadCoordinates(read, 0, splice.loc.getStop() - readLoc.getSt… in fixSplit() 267 final int overhang = readLoc.getStop() - splice.loc.getStart() + 1; in fixSplit() 283 …dLoc.getStart() <= spliceLoc.getStop() && readLoc.getStart() > spliceLoc.getStart() && readLoc.get… in isLeftOverhang() 294 …return readLoc.getStop() >= spliceLoc.getStart() && readLoc.getStop() < spliceLoc.getStop() && rea… in isRightOverhang() 489 …ence = referenceReader.getSubsequenceAt(loc.getContig(), loc.getStart(), loc.getStop()).getBases(); in initialize()
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/dports/editors/libreoffice/libreoffice-7.2.6.2/drawinglayer/source/primitive2d/ |
H A D | wrongspellprimitive2d.cxx | 57 basegfx::B2DPoint aStop(getStop(), fRelativeUnderlineDistance); in create2DDecomposition() 91 && getStop() == rCompare.getStop() in operator ==()
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/dports/editors/libreoffice6/libreoffice-6.4.7.2/drawinglayer/source/primitive2d/ |
H A D | wrongspellprimitive2d.cxx | 59 basegfx::B2DPoint aStop(getStop(), fRelativeUnderlineDistance); in create2DDecomposition() 93 && getStop() == rCompare.getStop() in operator ==()
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/dports/games/libretro-scummvm/scummvm-7b1e929/engines/pegasus/ |
H A D | energymonitor.cpp | 125 setTime(getStop() - value); in setEnergyValue() 128 setTime(getStop() - value); in setEnergyValue() 165 if (currentTime == getStop()) { in timeChanged() 231 if (getStop() == 0) { in calcLevelRect() 235 r.left = r.right - r.width() * (kMaxJMPEnergy - getTime()) / getStop(); in calcLevelRect()
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H A D | timers.cpp | 147 return getTime() != getStop(); in isRunning() 169 TimeValue TimeBase::getStop(const TimeScale scale) const { in getStop() function in Pegasus::TimeBase 183 stopTime = getStop(scale); in getSegment() 415 return _fuseTimer.getStop() - _fuseTimer.getTime(); in getTimeRemaining()
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/dports/games/scummvm/scummvm-2.5.1/engines/pegasus/ |
H A D | energymonitor.cpp | 125 setTime(getStop() - value); in setEnergyValue() 128 setTime(getStop() - value); in setEnergyValue() 165 if (currentTime == getStop()) { in timeChanged() 231 if (getStop() == 0) { in calcLevelRect() 235 r.left = r.right - r.width() * (kMaxJMPEnergy - getTime()) / getStop(); in calcLevelRect()
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H A D | timers.cpp | 147 return getTime() != getStop(); in isRunning() 169 TimeValue TimeBase::getStop(const TimeScale scale) const { in getStop() function in Pegasus::TimeBase 183 stopTime = getStop(scale); in getSegment() 411 return _fuseTimer.getStop() - _fuseTimer.getTime(); in getTimeRemaining()
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/dports/devel/RStudio/rstudio-2021.09.1-372/src/gwt/src/org/rstudio/studio/client/rmarkdown/model/ |
H A D | NotebookQueueUnit.java | 124 ranges.get(i).getStop() <= range.getStop()) in hasPendingRange() 150 if (i >= range.getStart() && i < range.getStop()) in linesFromRanges()
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H A D | NotebookExecRange.java | 36 public final native int getStop() /*-{ in getStop() method in NotebookExecRange
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/dports/audio/rhvoice/RHVoice-1.2.4/src/third-party/cldr/tools/java/org/unicode/cldr/util/ |
H A D | Tabber.java | 100 int last = getStop(stops.size() - 1); in add() 106 public int getStop(int fieldNumber) { in getStop() method in Tabber.MonoTabber 121 int startPos = getStop(count - 1); in process_field() 122 int endPos = getStop(count) - minGap; in process_field()
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/dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/tools/walkers/rnaseq/ |
H A D | OverhangFixingManagerUnitTest.java | 73 final boolean isValidOverhang = readLoc.getStart() <= spliceLoc.getStop() && in testLeftOverhangs() 74 readLoc.getStop() > spliceLoc.getStop() && in testLeftOverhangs() 81 final boolean isValidOverhang = readLoc.getStop() >= spliceLoc.getStart() && in testRightOverhangs() 82 readLoc.getStop() < spliceLoc.getStop() && in testRightOverhangs()
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/dports/math/primecount/primecount-7.2/lib/primesieve/include/primesieve/ |
H A D | Erat.hpp | 91 uint64_t getStop() const; 158 inline uint64_t Erat::getStop() const in getStop() function in primesieve::Erat
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/dports/math/primesieve/primesieve-7.7/include/primesieve/ |
H A D | Erat.hpp | 91 uint64_t getStop() const; 158 inline uint64_t Erat::getStop() const in getStop() function in primesieve::Erat
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/dports/databases/hsqldb/hsqldb-2.3.4/hsqldb/src/org/hsqldb/lib/tar/ |
H A D | TarGenerator.java | 284 int stop = field.getStop(); in writeField() 305 int stop = field.getStop(); in clearField() 318 newValue, field.getStop() - field.getStart()), target); in writeField() 559 && (i < TarHeaderField.checksum.getStop())); in headerChecksum()
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H A D | TarHeaderField.java | 118 public int getStop() { return stop; } in getStop() method in TarHeaderField
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/dports/math/primesieve/primesieve-7.7/test/ |
H A D | count_primes1.cpp | 54 count += ps.countPrimes(ps.getStop() + 1, (uint64_t) pow(10.0, i)); in main()
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/dports/math/primecount/primecount-7.2/lib/primesieve/test/ |
H A D | count_primes1.cpp | 54 count += ps.countPrimes(ps.getStop() + 1, (uint64_t) pow(10.0, i)); in main()
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