| /dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/tools/walkers/contamination/ |
| H A D | CalculateContamination.java | 143 …final List<PileupSummary> coveredSites = allSites.stream().filter(s -> s.getTotalCount() > MIN_COV… in filterSitesByCoverage()
144 …final double[] coverage = coveredSites.stream().mapToDouble(PileupSummary::getTotalCount).toArray(… in filterSitesByCoverage()
150 ….filter(ps -> ps.getTotalCount() > lowCoverageThreshold && ps.getTotalCount() < highCoverageThresh… in filterSitesByCoverage()
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| H A D | ContaminationModel.java | 151 final long totalDepth = homs.stream().mapToLong(PileupSummary::getTotalCount).sum(); in calculateContamination()
160 .mapToDouble(ps -> ps.getTotalCount() * oppositeAlleleFrequency.applyAsDouble(ps)) in calculateContamination()
166 final double d = ps.getTotalCount(); in calculateContamination()
200 final long totalBases = sites.stream().mapToInt(PileupSummary::getTotalCount).sum(); in calculateErrorRate()
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| /dports/net-mgmt/icingaweb2-module-ipl/icingaweb2-module-ipl-0.5.0/vendor/ipl/web/src/Control/ |
| H A D | PaginationControl.php | 140 public function getTotalCount() function in ipl\\Web\\Control\\PaginationControl
186 return ceil($this->getTotalCount() / $pageSize);
308 return min($pageNumber * $this->getPageSize(), $this->getTotalCount());
324 $this->getTotalCount()
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| /dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/tools/walkers/mutect/clustering/ |
| H A D | BetaBinomialCluster.java | 34 final int refCount = datum.getTotalCount() - altCount; in correctedLogLikelihood()
47 final int ref = datum.getTotalCount() - alt; in learn()
49 …final double digammaOfTotalPlusAlphaPlusBeta = Gamma.digamma(datum.getTotalCount() + alpha + beta); in learn()
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| H A D | SomaticClusteringModel.java | 160 …= data.stream().mapToDouble(datum -> backgroundProbGivenSomatic(datum.getTotalCount(), datum.getAl… in initializeClusters()
195 … = data.stream().mapToDouble(datum -> logLikelihoodGivenSomatic(datum.getTotalCount(), datum.getAl… in initializeClusters()
224 ….map(d -> ImmutablePair.of((double) d.getAltCount() / d.getTotalCount(), probabilityOfSomaticVaria… in calculateAlleleFractionQuantiles()
271 …ray(alleleFractionQuantiles, f -> MathUtils.binomialProbability(datum.getTotalCount(), datum.getAl… in calculateQuantileBackgroundResponsibilities()
272 …plyToArrayInPlace(quantileResponsibilities, x -> x * backgroundProb * (datum.getTotalCount() + 1)); in calculateQuantileBackgroundResponsibilities()
352 …ouble(c -> logClusterWeights[c] + clusters.get(c).logLikelihood(datum.getTotalCount(), datum.getAl…
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| /dports/devel/pecl-APCu/apcu-5.1.21/ |
| H A D | apc_iterator_legacy_arginfo.h | 37 ZEND_METHOD(APCUIterator, getTotalCount);
49 ZEND_ME(APCUIterator, getTotalCount, arginfo_class_APCUIterator_getTotalCount, ZEND_ACC_PUBLIC)
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| H A D | apc_iterator_arginfo.h | 41 ZEND_METHOD(APCUIterator, getTotalCount);
53 ZEND_ME(APCUIterator, getTotalCount, arginfo_class_APCUIterator_getTotalCount, ZEND_ACC_PUBLIC)
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| H A D | apc_iterator.stub.php | 30 public function getTotalCount(): int; function in APCUIterator
|
| /dports/net-mgmt/icingaweb2-module-x509/icingaweb2-module-x509-1.0.0-8-g39fd7e1/library/X509/ |
| H A D | Paginator.php | 173 public function getTotalCount() function in Icinga\\Module\\X509\\Paginator
219 return ceil($this->getTotalCount() / $pageSize);
328 $totalCount = $this->getTotalCount();
|
| /dports/net-mgmt/icingaweb2-module-x509/icingaweb2-module-x509-1.0.0-8-g39fd7e1/vendor/ipl/pagination/src/ |
| H A D | Paginator.php | 137 public function getTotalCount() function in lipl\\Pagination\\Paginator
183 return ceil($this->getTotalCount() / $pageSize);
294 $totalCount = $this->getTotalCount();
|
| /dports/sysutils/terraform/terraform-1.0.11/vendor/github.com/aliyun/aliyun-tablestore-go-sdk/tablestore/search/ |
| H A D | search_query.go | 55 func (s *searchQuery) SetGetTotalCount(getTotalCount bool) *searchQuery {
56 s.GetTotalCount = getTotalCount
|
| /dports/finance/prestashop/prestashop/modules/statsbestsuppliers/ |
| H A D | statsbestsuppliers.php | 116 public function getTotalCount() function in statsbestsuppliers
132 $this->_totalCount = $this->getTotalCount();
|
| /dports/finance/prestashop/prestashop/modules/statsbestmanufacturers/ |
| H A D | statsbestmanufacturers.php | 117 public function getTotalCount() function in statsbestmanufacturers
134 $this->_totalCount = $this->getTotalCount();
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| /dports/www/thirtybees/thirtybees-1.1.0/modules/statsmodule/stats/ |
| H A D | statsbestsuppliers.php | 114 public function getTotalCount() function in StatsBestSuppliers
130 $this->_totalCount = $this->getTotalCount();
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| H A D | statsbestmanufacturers.php | 114 public function getTotalCount() function in StatsBestManufacturers
130 $this->_totalCount = $this->getTotalCount();
|
| /dports/java/eclipse/eclipse.platform.releng.aggregator-R4_16/eclipse.pde.ui/ui/org.eclipse.pde.ui/src/org/eclipse/pde/internal/ui/parts/ |
| H A D | WizardCheckboxTablePart.java | 158 String totalNumber = "" + getTotalCount(); //$NON-NLS-1$ in updateCounterLabel()
171 private int getTotalCount() { in getTotalCount() method in WizardCheckboxTablePart
183 selected = getTotalCount(); in handleSelectAll()
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| /dports/devel/hadoop2/hadoop-2.7.2-src/hadoop-hdfs-project/hadoop-hdfs/src/test/java/org/apache/hadoop/hdfs/server/namenode/top/window/ |
| H A D | TestRollingWindowManager.java | 82 op.getTotalCount()); in testTops()
100 (1 + users.length) * (users.length / 2), op.getTotalCount()); in testTops()
|
| /dports/devel/hs-git-brunch/git-brunch-1.5.1.0/_cabal_deps/hspec-core-2.7.10/src/Test/Hspec/Core/ |
| H A D | Formatters.hs | 31 , getTotalCount
84 , getTotalCount
304 total <- getTotalCount
|
| /dports/www/drupal9/drupal-9.2.10/core/modules/statistics/src/ |
| H A D | StatisticsViewsResult.php | 36 public function getTotalCount() { function in Drupal\\statistics\\StatisticsViewsResult
|
| /dports/www/drupal8/drupal-8.9.20/core/modules/statistics/src/ |
| H A D | StatisticsViewsResult.php | 36 public function getTotalCount() { function in Drupal\\statistics\\StatisticsViewsResult
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| /dports/www/owncloud/owncloud/apps/files_external/3rdparty/google/apiclient-services/src/Google/Service/DataLabeling/ |
| H A D | GoogleCloudDatalabelingV1alpha1ImportDataOperationResponse.php | 44 public function getTotalCount() function in Google_Service_DataLabeling_GoogleCloudDatalabelingV1alpha1ImportDataOperationResponse
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| H A D | GoogleCloudDatalabelingV1beta1ImportDataOperationResponse.php | 44 public function getTotalCount() function in Google_Service_DataLabeling_GoogleCloudDatalabelingV1beta1ImportDataOperationResponse
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| H A D | GoogleCloudDatalabelingV1p1alpha1ImportDataOperationResponse.php | 44 public function getTotalCount() function in Google_Service_DataLabeling_GoogleCloudDatalabelingV1p1alpha1ImportDataOperationResponse
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| H A D | GoogleCloudDatalabelingV1p2alpha1ImportDataOperationResponse.php | 44 public function getTotalCount() function in Google_Service_DataLabeling_GoogleCloudDatalabelingV1p2alpha1ImportDataOperationResponse
|
| /dports/www/orangehrm/orangehrm-4.9/symfony/lib/vendor/google/apiclient-services/src/Google/Service/Proximitybeacon/ |
| H A D | ListBeaconsResponse.php | 52 public function getTotalCount() function in Google_Service_Proximitybeacon_ListBeaconsResponse
|