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Searched refs:getUseNegMatrix (Results 1 – 4 of 4) sorted by relevance

/dports/biology/clustalw/clustalw-2.1/src/general/
H A DUserParameters.h104 bool getUseNegMatrix(){return negMatrix;}; in getUseNegMatrix() function
/dports/biology/clustalw/clustalw-2.1/src/interface/
H A DInteractiveMenu.cpp962 << ((!userParameters->getUseNegMatrix()) ? "OFF" : "ON") << "\n\n"; in multiMenu()
/dports/biology/clustalw/clustalw-2.1/src/multipleAlign/
H A DMyersMillerProfileAlign.cpp117 negative = userParameters->getUseNegMatrix(); in profileAlign()
/dports/biology/clustalw/clustalw-2.1/src/substitutionMatrix/
H A DSubMatrix.cpp408 bool _negMatrix = userParameters->getUseNegMatrix(); in getProfileAlignMatrix()