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Searched refs:get_ALT_allele (Results 1 – 5 of 5) sorted by relevance

/dports/biology/vcftools/vcftools-0.1.16/src/cpp/
H A Dentry.h72 string get_ALT_allele(int allele_num) const;
H A Dentry_getters.cpp136 string entry::get_ALT_allele(int allele_num) const in get_ALT_allele() function in entry
H A Dvariant_file_format_convert.cpp588 … e->get_POS() << " " << e->get_POS() << " " << e->get_REF() << " " << e->get_ALT_allele(0) << endl; in output_as_IMPUTE()
591 …legend << e->get_ID() << " " << e->get_POS() << " " << e->get_REF() << " " << e->get_ALT_allele(0)… in output_as_IMPUTE()
H A Dentry_filters.cpp202 string alt_allele = get_ALT_allele(0); in filter_sites_by_quality()
H A Dvariant_file_output.cpp2898 string model = e->get_REF() + e->get_ALT_allele(0); in output_FILTER_summary()
3004 model = e->get_REF() + e->get_ALT_allele(0); in output_TsTv()
3107 model = e->get_REF() + e->get_ALT_allele(0); in output_TsTv_summary()
3190 model = e->get_REF() + e->get_ALT_allele(0); in output_TsTv_by_count()
3272 model = e->get_REF() + e->get_ALT_allele(0);; in output_TsTv_by_quality()