Searched refs:get_POS (Results 1 – 5 of 5) sorted by relevance
115 POS = e->get_POS(); in output_as_plink()317 TPED << CHROM2 << "\t" << e->get_CHROM() << ":" << e->get_POS() << "\t0\t" << e->get_POS(); in output_as_plink_tped()319 TPED << CHROM2 << "\t" << e->get_ID() << "\t0\t" << e->get_POS(); in output_as_plink_tped()443 MAP << e->get_CHROM() << "\t" << e->get_POS() << endl; in output_as_012_matrix()588 …legend << e->get_CHROM() << "-" << e->get_POS() << " " << e->get_POS() << " " << e->get_REF() << "… in output_as_IMPUTE()725 POS = e->get_POS(); in output_as_LDhat_phased()886 POS = e->get_POS(); in output_as_LDhat_unphased()1088 POS = e->get_POS(); in output_as_LDhelmet()1194 out << e->get_CHROM() << "\t" << e->get_POS() << "\t" << e->get_REF() << "\t" << e->get_ALT(); in output_INFO_for_each_site()1250 out << e->get_CHROM() << "\t" << e->get_POS(); in output_FORMAT_information()[all …]
113 POS1 = e1->get_POS(); in output_sites_in_files()133 POS2 = e2->get_POS(); in output_sites_in_files()386 POS1 = e1->get_POS(); in output_discordance_by_indv()406 POS2 = e2->get_POS(); in output_discordance_by_indv()694 POS1 = e1->get_POS(); in output_discordance_by_site()714 POS2 = e2->get_POS(); in output_discordance_by_site()990 POS1 = e1->get_POS(); in output_discordance_matrix()1010 POS2 = e2->get_POS(); in output_discordance_matrix()1280 POS1 = e1->get_POS(); in output_switch_error()1300 POS2 = e2->get_POS(); in output_switch_error()
738 POS = e->get_POS(); in output_SNP_density()1259 POS1 = e->get_POS(); in output_haplotype_count()1472 POS = e->get_POS(); in output_haplotype_r2()1652 POS = e->get_POS(); in output_genotype_r2()1818 POS = e->get_POS(); in output_genotype_chisq()1990 POS = e->get_POS(); in output_interchromosomal_genotype_r2()2145 POS = e->get_POS(); in output_interchromosomal_haplotype_r2()2360 POS = e->get_POS(); in output_haplotype_r2_of_SNP_list_vs_all_others()2601 POS = e->get_POS(); in output_genotype_r2_of_SNP_list_vs_all_others()4251 POS = e->get_POS(); in output_kept_sites()[all …]
68 int get_POS() const;
23 int entry::get_POS() const in get_POS() function in entry