Searched refs:get_allele (Results 1 – 5 of 5) sorted by relevance
| /dports/biology/vcftools/vcftools-0.1.16/src/cpp/ |
| H A D | entry_getters.cpp | 108 void entry::get_allele(int allele_num, string &out) const in get_allele() function in entry
122 string entry::get_allele(int allele_num) const in get_allele() function in entry
293 get_allele(GENOTYPE[indv].first, out_allele1); in get_indv_GENOTYPE_strings()
294 get_allele(GENOTYPE[indv].second, out_allele2); in get_indv_GENOTYPE_strings()
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| H A D | entry.h | 73 void get_allele(int allele_num, string &out) const;
74 string get_allele(int allele_num) const;
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| H A D | entry_filters.cpp | 622 pos2 = max(pos2, (int)(pos1 + get_allele(i).length() - 1)); in filter_sites_by_BED_file()
849 get_allele(ui, allele); in filter_sites_by_allele_type()
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| H A D | variant_file_output.cpp | 89 if (AA == e->get_allele(ui)) in output_frequency()
110 out << "\t" << e->get_allele(aa_idx) << ":" << allele_counts[aa_idx]; in output_frequency()
114 out << "\t" << e->get_allele(ui) << ":" << allele_counts[ui]; in output_frequency()
135 out << "\t" << e->get_allele(aa_idx) << ":" << freq; in output_frequency()
141 out << "\t" << e->get_allele(ui) << ":" << freq; in output_frequency()
450 if (AA == e->get_allele(ui)) in output_indv_burden()
575 if (AA == e->get_allele(ui)) in output_indv_freq_burden()
2773 e->get_allele(a, allele); in output_singletons()
2789 e->get_allele(a, allele); in output_singletons()
5227 e->get_allele(ui, allele); in output_indel_hist()
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| /dports/biology/hisat2/hisat2-2.2.1/evaluation/tests/HLA_novel/ |
| H A D | hisatgenotype_locus_prev.py | 894 def get_allele(gene_name, allele_name, Vars, Var_list, Links): function
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