| /dports/science/py-rmf/rmf-1.3.1/src/ |
| H A D | signature.cpp | 102 if (bdcf.get_is(nh)) ret << " bond"; in get_frame_signature()
103 if (ccf.get_is(nh)) ret << " color"; in get_frame_signature()
104 if (pcf.get_is(nh)) in get_frame_signature()
106 else if (ipcf.get_is(nh)) in get_frame_signature()
108 if (rpcf.get_is(nh)) ret << " rigid"; in get_frame_signature()
109 if (scf.get_is(nh)) ret << " score"; in get_frame_signature()
110 if (bcf.get_is(nh)) ret << " ball"; in get_frame_signature()
111 if (cycf.get_is(nh)) ret << " cylinder"; in get_frame_signature()
113 if (rcf.get_is(nh)) ret << " residue"; in get_frame_signature()
114 if (acf.get_is(nh)) ret << " atom"; in get_frame_signature()
[all …]
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| H A D | show_hierarchy.cpp | 79 if (altcf.get_is(n)) { in print_tree()
193 else if (bdcf.get_is(n)) out << " bond"; in show_node_decorators()
195 else if (ccf.get_is(n)) out << " color"; in show_node_decorators()
200 else if (pcf.get_is(n)) in show_node_decorators()
202 else if (ipcf.get_is(n)) in show_node_decorators()
205 else if (rpcf.get_is(n)) out << " rigid"; in show_node_decorators()
207 else if (scf.get_is(n)) out << " score"; in show_node_decorators()
211 else if (bcf.get_is(n)) out << " ball"; in show_node_decorators()
217 else if (rcf.get_is(n)) out << " residue"; in show_node_decorators()
219 else if (acf.get_is(n)) out << " atom"; in show_node_decorators()
[all …]
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| H A D | TraverseHelper.cpp | 43 if (data_->state_factory_.get_is(n)) { in visit_impl()
47 if (data_->alternatives_factory_.get_is(n)) { in visit_impl()
55 if (data_->reference_frame_factory_.get_is(*this)) { in visit_impl()
60 if (data_->colored_factory_.get_is(*this)) { in visit_impl()
63 if (data_->residue_factory_.get_is(*this)) { in visit_impl()
69 if (data_->chain_factory_.get_is(*this)) { in visit_impl()
72 if (data_->copy_factory_.get_is(*this)) { in visit_impl()
99 if (data_->state_filter_ != -1 && data_->state_factory_.get_is(ch) && in get_children()
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| H A D | utility.cpp | 123 if (rff.get_is(root)) { in get_bounding_box_impl()
126 if (ipf.get_is(root)) { in get_bounding_box_impl()
132 if (gpf.get_is(root)) { in get_bounding_box_impl()
137 if (bf.get_is(root)) { in get_bounding_box_impl()
141 if (sf.get_is(root)) { in get_bounding_box_impl()
143 handle_vector(tr, v, cf.get_is(root) ? cf.get(root).get_radius() : 0.0f, in get_bounding_box_impl()
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| /dports/science/rmf/rmf-1.3.1/src/ |
| H A D | signature.cpp | 102 if (bdcf.get_is(nh)) ret << " bond"; in get_frame_signature()
103 if (ccf.get_is(nh)) ret << " color"; in get_frame_signature()
104 if (pcf.get_is(nh)) in get_frame_signature()
106 else if (ipcf.get_is(nh)) in get_frame_signature()
108 if (rpcf.get_is(nh)) ret << " rigid"; in get_frame_signature()
109 if (scf.get_is(nh)) ret << " score"; in get_frame_signature()
110 if (bcf.get_is(nh)) ret << " ball"; in get_frame_signature()
111 if (cycf.get_is(nh)) ret << " cylinder"; in get_frame_signature()
113 if (rcf.get_is(nh)) ret << " residue"; in get_frame_signature()
114 if (acf.get_is(nh)) ret << " atom"; in get_frame_signature()
[all …]
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| H A D | show_hierarchy.cpp | 79 if (altcf.get_is(n)) { in print_tree()
193 else if (bdcf.get_is(n)) out << " bond"; in show_node_decorators()
195 else if (ccf.get_is(n)) out << " color"; in show_node_decorators()
200 else if (pcf.get_is(n)) in show_node_decorators()
202 else if (ipcf.get_is(n)) in show_node_decorators()
205 else if (rpcf.get_is(n)) out << " rigid"; in show_node_decorators()
207 else if (scf.get_is(n)) out << " score"; in show_node_decorators()
211 else if (bcf.get_is(n)) out << " ball"; in show_node_decorators()
217 else if (rcf.get_is(n)) out << " residue"; in show_node_decorators()
219 else if (acf.get_is(n)) out << " atom"; in show_node_decorators()
[all …]
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| H A D | TraverseHelper.cpp | 43 if (data_->state_factory_.get_is(n)) { in visit_impl()
47 if (data_->alternatives_factory_.get_is(n)) { in visit_impl()
55 if (data_->reference_frame_factory_.get_is(*this)) { in visit_impl()
60 if (data_->colored_factory_.get_is(*this)) { in visit_impl()
63 if (data_->residue_factory_.get_is(*this)) { in visit_impl()
69 if (data_->chain_factory_.get_is(*this)) { in visit_impl()
72 if (data_->copy_factory_.get_is(*this)) { in visit_impl()
99 if (data_->state_filter_ != -1 && data_->state_factory_.get_is(ch) && in get_children()
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| H A D | utility.cpp | 123 if (rff.get_is(root)) { in get_bounding_box_impl()
126 if (ipf.get_is(root)) { in get_bounding_box_impl()
132 if (gpf.get_is(root)) { in get_bounding_box_impl()
137 if (bf.get_is(root)) { in get_bounding_box_impl()
141 if (sf.get_is(root)) { in get_bounding_box_impl()
143 handle_vector(tr, v, cf.get_is(root) ? cf.get(root).get_radius() : 0.0f, in get_bounding_box_impl()
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| /dports/science/py-rmf/rmf-1.3.1/plugins/vmd/ |
| H A D | Data.cpp | 132 if (rff_.get_is(cur)) { in handle_state()
183 if (altf_.get_is(cur)) in fill_bodies()
196 if (chf_.get_is(cur)) { in fill_bodies()
200 if (rf_.get_is(cur)) { in fill_bodies()
218 if (bf_.get_is(cur)) { in fill_bodies()
240 if (rff_.get_is(cur)) { in fill_graphics()
249 if (cf_.get_is(cur)) { in fill_graphics()
335 if (af_.get_is(cur)) { in copy_particles()
337 } else if (ff_.get_is(cur)) { in copy_particles()
339 } else if (df_.get_is(cur)) { in copy_particles()
[all …]
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| /dports/science/rmf/rmf-1.3.1/plugins/vmd/ |
| H A D | Data.cpp | 132 if (rff_.get_is(cur)) { in handle_state()
183 if (altf_.get_is(cur)) in fill_bodies()
196 if (chf_.get_is(cur)) { in fill_bodies()
200 if (rf_.get_is(cur)) { in fill_bodies()
218 if (bf_.get_is(cur)) { in fill_bodies()
240 if (rff_.get_is(cur)) { in fill_graphics()
249 if (cf_.get_is(cur)) { in fill_graphics()
335 if (af_.get_is(cur)) { in copy_particles()
337 } else if (ff_.get_is(cur)) { in copy_particles()
339 } else if (df_.get_is(cur)) { in copy_particles()
[all …]
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| /dports/science/py-rmf/rmf-1.3.1/plugins/pymol/ |
| H A D | plugin.py | 80 if mydata.atom_factory.get_is(helper):
105 and mydata.particle_factory.get_is(helper):
109 if mydata.ball_factory.get_is(helper):
116 elif mydata.cylinder_factory.get_is(helper):
119 elif mydata.segment_factory.get_is(helper):
121 elif tp == RMF.BOND and mydata.bond_factory.get_is(helper):
155 if mf.get_is(n) or cf.get_is(n):
157 elif n.get_type() == RMF.BOND and mydata.bond_factory.get_is(n):
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| /dports/science/rmf/rmf-1.3.1/plugins/pymol/ |
| H A D | plugin.py | 80 if mydata.atom_factory.get_is(helper):
105 and mydata.particle_factory.get_is(helper):
109 if mydata.ball_factory.get_is(helper):
116 elif mydata.cylinder_factory.get_is(helper):
119 elif mydata.segment_factory.get_is(helper):
121 elif tp == RMF.BOND and mydata.bond_factory.get_is(helper):
155 if mf.get_is(n) or cf.get_is(n):
157 elif n.get_type() == RMF.BOND and mydata.bond_factory.get_is(n):
|
| /dports/science/py-rmf/rmf-1.3.1/examples/ |
| H A D | reference_frames.py | 17 if reference_frame_factory.get_is(node):
21 elif segment_factory.get_is(node):
30 elif particle_factory.get_is(node):
33 elif ball_factory.get_is(node):
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| H A D | add_bonds.py | 8 if rcf.get_is(pin):
18 if acf.get_is(c) and c.get_name().find("CA") != -1:
32 if ccf.get_is(pin):
|
| /dports/science/rmf/rmf-1.3.1/examples/ |
| H A D | reference_frames.py | 17 if reference_frame_factory.get_is(node):
21 elif segment_factory.get_is(node):
30 elif particle_factory.get_is(node):
33 elif ball_factory.get_is(node):
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| H A D | add_bonds.py | 8 if rcf.get_is(pin):
18 if acf.get_is(c) and c.get_name().find("CA") != -1:
32 if ccf.get_is(pin):
|
| /dports/science/py-rmf/rmf-1.3.1/test/ |
| H A D | test_reference.py | 26 self.assertFalse(rf.get_is(c0))
27 self.assertTrue(rf.get_is(c1))
36 self.assertFalse(rf.get_is(c0))
37 self.assertTrue(rf.get_is(c1))
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| H A D | test_provenance.py | 95 self.assertTrue(clustpf.get_is(prov_root))
102 self.assertTrue(clustpf.get_is(clust_node))
109 self.assertTrue(filtpf.get_is(filt_node))
116 self.assertTrue(samppf.get_is(samp_node))
124 self.assertTrue(strucpf.get_is(struc_node))
131 self.assertTrue(scriptpf.get_is(script_node))
136 self.assertTrue(softpf.get_is(soft_node))
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| H A D | test_chain.py | 32 self.assertTrue(cf.get_is(c0))
33 self.assertFalse(cf.get_is(c1))
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| /dports/science/rmf/rmf-1.3.1/test/ |
| H A D | test_reference.py | 26 self.assertFalse(rf.get_is(c0))
27 self.assertTrue(rf.get_is(c1))
36 self.assertFalse(rf.get_is(c0))
37 self.assertTrue(rf.get_is(c1))
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| H A D | test_provenance.py | 95 self.assertTrue(clustpf.get_is(prov_root))
102 self.assertTrue(clustpf.get_is(clust_node))
109 self.assertTrue(filtpf.get_is(filt_node))
116 self.assertTrue(samppf.get_is(samp_node))
124 self.assertTrue(strucpf.get_is(struc_node))
131 self.assertTrue(scriptpf.get_is(script_node))
136 self.assertTrue(softpf.get_is(soft_node))
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| H A D | test_chain.py | 32 self.assertTrue(cf.get_is(c0))
33 self.assertFalse(cf.get_is(c1))
|
| /dports/science/py-rmf/rmf-1.3.1/src/decorator/ |
| H A D | alternatives.cpp | 35 if (ipcf.get_is(root)) { in get_resolution_impl()
38 } else if (gpf.get_is(root)) { in get_resolution_impl()
104 if (erf.get_is(root)) { in get_resolution()
164 if (af.get_is(root)) { in get_resolutions_impl()
|
| /dports/science/rmf/rmf-1.3.1/src/decorator/ |
| H A D | alternatives.cpp | 35 if (ipcf.get_is(root)) { in get_resolution_impl()
38 } else if (gpf.get_is(root)) { in get_resolution_impl()
104 if (erf.get_is(root)) { in get_resolution()
164 if (af.get_is(root)) { in get_resolutions_impl()
|
| /dports/science/py-rmf/rmf-1.3.1/bin/ |
| H A D | rmf_transform.cpp | 25 if (f.get_is(nh)) { \
35 if (f.get_is(nh)) { \
61 if (ipf.get_is(nh)) { in transform()
|