| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/util/bitset/ |
| H A D | bmalloc.h | 343 const bm::gap_word_t* glevel_len) in alloc_gap_block() argument
347 (unsigned)(glevel_len[level] / (sizeof(bm::word_t) / sizeof(bm::gap_word_t))); in alloc_gap_block()
355 const bm::gap_word_t* glevel_len) in free_gap_block() argument
359 unsigned len = bm::gap_capacity(block, glevel_len); in free_gap_block()
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| H A D | bmblocks.h | 254 const gap_word_t* glevel_len) BMNOEXCEPT in gap_level_func() argument
255 : bm_func_base(bm), glevel_len_(glevel_len) in gap_level_func()
257 BM_ASSERT(glevel_len); in gap_level_func()
334 blocks_manager(const gap_word_t* glevel_len,
342 ::memcpy(glevel_len_, glevel_len, sizeof(glevel_len_)); in max_bits_()
1806 void set_glen(const gap_word_t* glevel_len) BMNOEXCEPT in set_glen() argument
1808 ::memcpy(glevel_len_, glevel_len, sizeof(glevel_len_)); in set_glen()
1813 const gap_word_t* glevel_len = 0)
1815 if (!glevel_len)
1816 glevel_len = glevel_len_;
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| H A D | bmfunc.h | 1615 return glevel_len[(*buf >> 1) & 3]; in gap_capacity()
1631 return glevel_len[(*buf >> 1) & 3]-4; in gap_limit()
8599 BM_ASSERT(length && length_end && glevel_len); in gap_overhead()
8607 unsigned capacity = glevel_len[level]; in gap_overhead()
8641 glevel_len[0] = T(max_len + 4); in improve_gap_levels()
8644 glevel_len[i] = bm::gap_max_buff_len; in improve_gap_levels()
8664 glevel_len[i] = T(length[j] + 4); in improve_gap_levels()
8680 glevel_len[i] = gap_saved_value; in improve_gap_levels()
8688 T val = *glevel_len; in improve_gap_levels()
8689 T* gp = glevel_len; in improve_gap_levels()
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| H A D | bm.h | 839 const gap_word_t* glevel_len; member
843 : strat(s), glevel_len(glevels) in strat()
876 const gap_word_t* glevel_len = bm::gap_len_table<true>::_len,
879 : blockman_(glevel_len, bv_size, alloc), in blockman_() argument
889 const gap_word_t* glevel_len = bm::gap_len_table<true>::_len,
891 : blockman_(glevel_len, bv_size, alloc), in blockman_() argument
1901 void set_gap_levels(const gap_word_t* glevel_len);
3212 void bvector<Alloc>::set_gap_levels(const gap_word_t* glevel_len) in set_gap_levels() argument
3218 blocks_manager_type::gap_level_func gl_func(blockman_, glevel_len); in set_gap_levels()
3222 blockman_.set_glen(glevel_len); in set_gap_levels()
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| H A D | bmbmatrix.h | 823 : new(mem) bvector_type(ap_.strat, ap_.glevel_len, in construct_bvector()
828 : new bvector_type(ap_.strat, ap_.glevel_len, in construct_bvector()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/util/bitset/ |
| H A D | bmalloc.h | 343 const bm::gap_word_t* glevel_len) in alloc_gap_block() argument
347 (unsigned)(glevel_len[level] / (sizeof(bm::word_t) / sizeof(bm::gap_word_t))); in alloc_gap_block()
355 const bm::gap_word_t* glevel_len) in free_gap_block() argument
359 unsigned len = bm::gap_capacity(block, glevel_len); in free_gap_block()
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| H A D | bmblocks.h | 254 const gap_word_t* glevel_len) BMNOEXCEPT in gap_level_func() argument
255 : bm_func_base(bm), glevel_len_(glevel_len) in gap_level_func()
257 BM_ASSERT(glevel_len); in gap_level_func()
334 blocks_manager(const gap_word_t* glevel_len,
342 ::memcpy(glevel_len_, glevel_len, sizeof(glevel_len_)); in max_bits_()
1806 void set_glen(const gap_word_t* glevel_len) BMNOEXCEPT in set_glen() argument
1808 ::memcpy(glevel_len_, glevel_len, sizeof(glevel_len_)); in set_glen()
1813 const gap_word_t* glevel_len = 0)
1815 if (!glevel_len)
1816 glevel_len = glevel_len_;
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| H A D | bmfunc.h | 1615 return glevel_len[(*buf >> 1) & 3]; in gap_capacity()
1631 return glevel_len[(*buf >> 1) & 3]-4; in gap_limit()
8599 BM_ASSERT(length && length_end && glevel_len); in gap_overhead()
8607 unsigned capacity = glevel_len[level]; in gap_overhead()
8641 glevel_len[0] = T(max_len + 4); in improve_gap_levels()
8644 glevel_len[i] = bm::gap_max_buff_len; in improve_gap_levels()
8664 glevel_len[i] = T(length[j] + 4); in improve_gap_levels()
8680 glevel_len[i] = gap_saved_value; in improve_gap_levels()
8688 T val = *glevel_len; in improve_gap_levels()
8689 T* gp = glevel_len; in improve_gap_levels()
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| H A D | bm.h | 839 const gap_word_t* glevel_len; member
843 : strat(s), glevel_len(glevels) in strat()
876 const gap_word_t* glevel_len = bm::gap_len_table<true>::_len,
879 : blockman_(glevel_len, bv_size, alloc), in blockman_() argument
889 const gap_word_t* glevel_len = bm::gap_len_table<true>::_len,
891 : blockman_(glevel_len, bv_size, alloc), in blockman_() argument
1901 void set_gap_levels(const gap_word_t* glevel_len);
3212 void bvector<Alloc>::set_gap_levels(const gap_word_t* glevel_len) in set_gap_levels() argument
3218 blocks_manager_type::gap_level_func gl_func(blockman_, glevel_len); in set_gap_levels()
3222 blockman_.set_glen(glevel_len); in set_gap_levels()
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| H A D | bmbmatrix.h | 823 : new(mem) bvector_type(ap_.strat, ap_.glevel_len, in construct_bvector()
828 : new bvector_type(ap_.strat, ap_.glevel_len, in construct_bvector()
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