| /dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/seeds/ |
| H A D | banded_chain_alignment_impl.h | 648 void _printTraceSegments(T const & globalTraceSet) in _printTraceSegments() argument
723 _initializeBandedChain(TTraceSet & globalTraceSet, in _initializeBandedChain() argument
864 globalTraceSet = localTraceSet; in _initializeBandedChain()
882 _computeGapArea(TTraceSet & globalTraceSet, in _computeGapArea() argument
927 _glueTracebacks(globalTraceSet, localTraceSet); in _computeGapArea()
941 _computeAnchorArea(TTraceSet & globalTraceSet, in _computeAnchorArea() argument
997 _glueTracebacks(globalTraceSet, localTraceSet); in _computeAnchorArea()
1013 _finishBandedChain(TTraceSet & globalTraceSet, in _finishBandedChain() argument
1067 _glueTracebacks(globalTraceSet, localTraceSet); in _finishBandedChain()
1128 _glueTracebacks(globalTraceSet, localTraceSet); in _finishBandedChain()
[all …]
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| H A D | banded_chain_alignment_profile.h | 219 _setupAndRunBandedChainAlignment(StringSet<String<TTraceSegment>, TStringSetSpec> & globalTraceSet,
254 …return _computeAlignment(globalTraceSet, seedSet, seqH, seqV, scoringSchemeAnchor, scoringSchemeGa…
260 …return _computeAlignment(globalTraceSet, seedSet, seqH, seqV, scoringSchemeAnchor, scoringSchemeGa…
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/seeds/ |
| H A D | banded_chain_alignment_impl.h | 729 void _printTraceSegments(T const & globalTraceSet) in _printTraceSegments() argument
811 _initializeBandedChain(TTraceSet & globalTraceSet, in _initializeBandedChain() argument
953 globalTraceSet = localTraceSet; in _initializeBandedChain()
972 _computeGapArea(TTraceSet & globalTraceSet, in _computeGapArea() argument
1019 _glueTracebacks(globalTraceSet, localTraceSet); in _computeGapArea()
1034 _computeAnchorArea(TTraceSet & globalTraceSet, in _computeAnchorArea() argument
1090 _glueTracebacks(globalTraceSet, localTraceSet); in _computeAnchorArea()
1107 _finishBandedChain(TTraceSet & globalTraceSet, in _finishBandedChain() argument
1161 _glueTracebacks(globalTraceSet, localTraceSet); in _finishBandedChain()
1222 _glueTracebacks(globalTraceSet, localTraceSet); in _finishBandedChain()
[all …]
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| H A D | banded_chain_alignment_profile.h | 223 _setupAndRunBandedChainAlignment(StringSet<String<TTraceSegment>, TStringSetSpec> & globalTraceSet,
258 …return _computeAlignment(globalTraceSet, seedSet, seqH, seqV, scoringSchemeAnchor, scoringSchemeGa…
264 …return _computeAlignment(globalTraceSet, seedSet, seqH, seqV, scoringSchemeAnchor, scoringSchemeGa…
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| /dports/biology/seqan/seqan-library-2.4.0/include/seqan/seeds/ |
| H A D | banded_chain_alignment_impl.h | 729 void _printTraceSegments(T const & globalTraceSet) in _printTraceSegments() argument
811 _initializeBandedChain(TTraceSet & globalTraceSet, in _initializeBandedChain() argument
953 globalTraceSet = localTraceSet; in _initializeBandedChain()
972 _computeGapArea(TTraceSet & globalTraceSet, in _computeGapArea() argument
1019 _glueTracebacks(globalTraceSet, localTraceSet); in _computeGapArea()
1034 _computeAnchorArea(TTraceSet & globalTraceSet, in _computeAnchorArea() argument
1090 _glueTracebacks(globalTraceSet, localTraceSet); in _computeAnchorArea()
1107 _finishBandedChain(TTraceSet & globalTraceSet, in _finishBandedChain() argument
1161 _glueTracebacks(globalTraceSet, localTraceSet); in _finishBandedChain()
1222 _glueTracebacks(globalTraceSet, localTraceSet); in _finishBandedChain()
[all …]
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| H A D | banded_chain_alignment_profile.h | 223 _setupAndRunBandedChainAlignment(StringSet<String<TTraceSegment>, TStringSetSpec> & globalTraceSet,
258 …return _computeAlignment(globalTraceSet, seedSet, seqH, seqV, scoringSchemeAnchor, scoringSchemeGa…
264 …return _computeAlignment(globalTraceSet, seedSet, seqH, seqV, scoringSchemeAnchor, scoringSchemeGa…
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