| /dports/biology/seqan/seqan-library-2.4.0/include/seqan/index/ |
| H A D | find_index_binary.h | 581 goFurther(q, lcp);
683 goFurther(q, lcp);
800 goFurther(q, lcp);
1271 goFurther(t, lcp); in _lowerBoundLcpe()
1272 goFurther(q, lcp); in _lowerBoundLcpe()
1304 goFurther(q, lcp); in _lowerBoundLcpe()
1311 goFurther(t, lcp); in _lowerBoundLcpe()
1449 goFurther(t, lcp); in _upperBoundLcpe()
1450 goFurther(q, lcp); in _upperBoundLcpe()
1479 goFurther(q, lcp); in _upperBoundLcpe()
[all …]
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| H A D | shape_onegapped.h | 183 goFurther(it, me.gapLen); in hash()
206 goFurther(it, me.gapLen); in hashInit()
243 goFurther(it, me.gapLen); in hash()
284 goFurther(it, me.gapLen); in hashUpper()
315 goFurther(it, me.blockLen1 - 1); in hashNext()
319 goFurther(it, me.gapLen); in hashNext()
323 goFurther(it, me.blockLen2); in hashNext()
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/index/ |
| H A D | find_index_binary.h | 581 goFurther(q, lcp);
683 goFurther(q, lcp);
800 goFurther(q, lcp);
1271 goFurther(t, lcp); in _lowerBoundLcpe()
1272 goFurther(q, lcp); in _lowerBoundLcpe()
1304 goFurther(q, lcp); in _lowerBoundLcpe()
1311 goFurther(t, lcp); in _lowerBoundLcpe()
1449 goFurther(t, lcp); in _upperBoundLcpe()
1450 goFurther(q, lcp); in _upperBoundLcpe()
1479 goFurther(q, lcp); in _upperBoundLcpe()
[all …]
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| H A D | shape_onegapped.h | 183 goFurther(it, me.gapLen); in hash()
206 goFurther(it, me.gapLen); in hashInit()
243 goFurther(it, me.gapLen); in hash()
284 goFurther(it, me.gapLen); in hashUpper()
315 goFurther(it, me.blockLen1 - 1); in hashNext()
319 goFurther(it, me.gapLen); in hashNext()
323 goFurther(it, me.blockLen2); in hashNext()
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| /dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/index/ |
| H A D | find_index_esa.h | 591 goFurther(q, lcp);
693 goFurther(q, lcp);
810 goFurther(q, lcp);
1281 goFurther(t, lcp);
1282 goFurther(q, lcp);
1314 goFurther(q, lcp);
1321 goFurther(t, lcp);
1459 goFurther(t, lcp);
1460 goFurther(q, lcp);
1489 goFurther(q, lcp);
[all …]
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| H A D | shape_onegapped.h | 186 goFurther(it, me.gapLen); in hash()
209 goFurther(it, me.gapLen); in hashInit()
246 goFurther(it, me.gapLen); in hash()
287 goFurther(it, me.gapLen); in hashUpper()
318 goFurther(it, me.blockLen1 - 1); in hashNext()
322 goFurther(it, me.gapLen); in hashNext()
326 goFurther(it, me.blockLen2); in hashNext()
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| /dports/biology/seqan1/seqan-1.3.1/seqan/align/ |
| H A D | align_algorithms.h | 95 goFurther(it0, siz); in _pumpTraceToAlign()
96 goFurther(it1, siz); in _pumpTraceToAlign()
145 goFurther(it, beginPosition(infixRow)); in integrateAlign()
154 goFurther(it, gapSize+1); in integrateAlign()
155 goFurther(infixIt, gapSize+1); in integrateAlign()
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| /dports/biology/seqan1/seqan-1.3.1/seqan/index/ |
| H A D | find_index_esa.h | 574 goFurther(t, lcp);
575 goFurther(q, lcp);
671 goFurther(t, lcp);
672 goFurther(q, lcp);
782 goFurther(t, lcp);
783 goFurther(q, lcp);
1253 goFurther(t, lcp);
1254 goFurther(q, lcp);
1286 goFurther(q, lcp);
1293 goFurther(t, lcp);
[all …]
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| H A D | shape_onegapped.h | 181 goFurther(it, me.gapLen); in hash()
217 goFurther(it, me.gapLen); in hash()
257 goFurther(it, me.gapLen); in hashUpper()
287 goFurther(it, me.blockLen1 - 1); in hashNext()
291 goFurther(it, me.gapLen); in hashNext()
295 goFurther(it, me.blockLen2); in hashNext()
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| /dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/align/ |
| H A D | alignment_operations.h | 115 goFurther(it, gapSize+1); in integrateAlign()
116 goFurther(infixIt, gapSize+1); in integrateAlign()
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| H A D | gaps_iterator_base.h | 453 goFurther(it, diff);
465 goFurther(it, -(__int64)(diff));
476 goFurther(Iter<TGaps, GapsIterator<TSpec> > & it,
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| H A D | gaps_iterator_array.h | 112 goFurther(*this, container_._clippingBeginPos); in Iter()
123 goFurther(*this, container_._clippingEndPos); in Iter()
138 goFurther(*this, pos); in Iter()
363 goFurther(Iter<TGaps, GapsIterator<ArrayGaps> > & it, in goFurther() function
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| H A D | dp_traceback_adaptor.h | 111 goFurther(it0, segmentSize); in _adaptTraceSegmentsTo()
112 goFurther(it1, segmentSize); in _adaptTraceSegmentsTo()
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| /dports/biology/seqan/seqan-library-2.4.0/include/seqan/align/ |
| H A D | alignment_operations.h | 82 goFurther(it, gapSize+1); in integrateGaps()
83 goFurther(sIt, gapSize+1); in integrateGaps()
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| H A D | gaps_iterator_base.h | 477 goFurther(it, diff);
489 goFurther(it, -(int64_t)(diff));
500 goFurther(Iter<TGaps, GapsIterator<TSpec> > & it,
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| H A D | dp_traceback_adaptor.h | 111 goFurther(it0, segmentSize); in _adaptTraceSegmentsTo()
112 goFurther(it1, segmentSize); in _adaptTraceSegmentsTo()
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| H A D | gaps_iterator_array.h | 112 goFurther(*this, container_._clippingBeginPos); in Iter()
123 goFurther(*this, container_._clippingEndPos); in Iter()
138 goFurther(*this, pos); in Iter()
405 goFurther(Iter<TGaps, GapsIterator<ArrayGaps> > & it, in goFurther() function
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/align/ |
| H A D | alignment_operations.h | 82 goFurther(it, gapSize+1); in integrateGaps()
83 goFurther(sIt, gapSize+1); in integrateGaps()
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| H A D | gaps_iterator_base.h | 477 goFurther(it, diff);
489 goFurther(it, -(int64_t)(diff));
500 goFurther(Iter<TGaps, GapsIterator<TSpec> > & it,
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| H A D | dp_traceback_adaptor.h | 111 goFurther(it0, segmentSize); in _adaptTraceSegmentsTo()
112 goFurther(it1, segmentSize); in _adaptTraceSegmentsTo()
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/basic/ |
| H A D | test_basic_iterator.h | 383 goFurther(ptr, 2); in SEQAN_DEFINE_TEST()
387 goFurther(ptr, -2); in SEQAN_DEFINE_TEST()
625 goFurther(it, 2); in SEQAN_DEFINE_TEST()
629 goFurther(it, -2); in SEQAN_DEFINE_TEST()
866 goFurther(it, 2); in SEQAN_DEFINE_TEST()
871 goFurther(it, -2); in SEQAN_DEFINE_TEST()
1125 goFurther(it, 2); in SEQAN_DEFINE_TEST()
1130 goFurther(it, -2); in SEQAN_DEFINE_TEST()
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| /dports/biology/seqan1/seqan-1.3.1/seqan/basic/ |
| H A D | basic_iterator_base.h | 283 goFurther(temp_, size);
292 goFurther(me, size);
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| /dports/biology/seqan/seqan-library-2.4.0/include/seqan/basic/ |
| H A D | iterator_base.h | 311 goFurther(temp_, size);
323 goFurther(me, size);
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/basic/ |
| H A D | iterator_base.h | 311 goFurther(temp_, size);
323 goFurther(me, size);
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| /dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/basic/ |
| H A D | iterator_base.h | 318 goFurther(temp_, size);
331 goFurther(me, size);
|