Searched refs:gridBeginH (Results 1 – 3 of 3) sorted by relevance
| /dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/seeds/ |
| H A D | banded_chain_alignment_impl.h | 1236 TPosH gridBeginH = scoutState._horizontalNextGridOrigin; in _computeAlignment() local
1238 … _reinitScoutState(scoutState, 0, 0, length(seqH) + 1 - gridBeginH, length(seqV) + 1 - gridBeginV, in _computeAlignment()
1239 length(seqH) + 1 - gridBeginH, length(seqV) + 1 - gridBeginV); in _computeAlignment()
1243 …score = _computeAlignment(localTraceSet, scoutState, suffix(seqH, gridBeginH), suffix(seqV, gridBe… in _computeAlignment()
1246 … _adaptLocalTracesToGlobalGrid(localTraceSet, Pair<TPosH, TPosV>(gridBeginH, gridBeginV)); in _computeAlignment()
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/seeds/ |
| H A D | banded_chain_alignment_impl.h | 1329 TPosH gridBeginH = scoutState._horizontalNextGridOrigin; in _computeAlignment() local
1331 … _reinitScoutState(scoutState, 0, 0, length(seqH) + 1 - gridBeginH, length(seqV) + 1 - gridBeginV, in _computeAlignment()
1332 length(seqH) + 1 - gridBeginH, length(seqV) + 1 - gridBeginV); in _computeAlignment()
1336 …score = _computeAlignment(localTraceSet, scoutState, suffix(seqH, gridBeginH), suffix(seqV, gridBe… in _computeAlignment()
1339 … _adaptLocalTracesToGlobalGrid(localTraceSet, Pair<TPosH, TPosV>(gridBeginH, gridBeginV)); in _computeAlignment()
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| /dports/biology/seqan/seqan-library-2.4.0/include/seqan/seeds/ |
| H A D | banded_chain_alignment_impl.h | 1329 TPosH gridBeginH = scoutState._horizontalNextGridOrigin; in _computeAlignment() local
1331 … _reinitScoutState(scoutState, 0, 0, length(seqH) + 1 - gridBeginH, length(seqV) + 1 - gridBeginV, in _computeAlignment()
1332 length(seqH) + 1 - gridBeginH, length(seqV) + 1 - gridBeginV); in _computeAlignment()
1336 …score = _computeAlignment(localTraceSet, scoutState, suffix(seqH, gridBeginH), suffix(seqV, gridBe… in _computeAlignment()
1339 … _adaptLocalTracesToGlobalGrid(localTraceSet, Pair<TPosH, TPosV>(gridBeginH, gridBeginV)); in _computeAlignment()
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