Searched refs:gridBeginV (Results 1 – 3 of 3) sorted by relevance
/dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/seeds/ |
H A D | banded_chain_alignment_impl.h | 1237 TPosV gridBeginV = scoutState._verticalNextGridOrigin; in _computeAlignment() local 1238 … _reinitScoutState(scoutState, 0, 0, length(seqH) + 1 - gridBeginH, length(seqV) + 1 - gridBeginV, in _computeAlignment() 1239 length(seqH) + 1 - gridBeginH, length(seqV) + 1 - gridBeginV); in _computeAlignment() 1243 … = _computeAlignment(localTraceSet, scoutState, suffix(seqH, gridBeginH), suffix(seqV, gridBeginV), in _computeAlignment() 1246 … _adaptLocalTracesToGlobalGrid(localTraceSet, Pair<TPosH, TPosV>(gridBeginH, gridBeginV)); in _computeAlignment()
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/dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/seeds/ |
H A D | banded_chain_alignment_impl.h | 1330 TPosV gridBeginV = scoutState._verticalNextGridOrigin; in _computeAlignment() local 1331 … _reinitScoutState(scoutState, 0, 0, length(seqH) + 1 - gridBeginH, length(seqV) + 1 - gridBeginV, in _computeAlignment() 1332 length(seqH) + 1 - gridBeginH, length(seqV) + 1 - gridBeginV); in _computeAlignment() 1336 … = _computeAlignment(localTraceSet, scoutState, suffix(seqH, gridBeginH), suffix(seqV, gridBeginV), in _computeAlignment() 1339 … _adaptLocalTracesToGlobalGrid(localTraceSet, Pair<TPosH, TPosV>(gridBeginH, gridBeginV)); in _computeAlignment()
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/dports/biology/seqan/seqan-library-2.4.0/include/seqan/seeds/ |
H A D | banded_chain_alignment_impl.h | 1330 TPosV gridBeginV = scoutState._verticalNextGridOrigin; in _computeAlignment() local 1331 … _reinitScoutState(scoutState, 0, 0, length(seqH) + 1 - gridBeginH, length(seqV) + 1 - gridBeginV, in _computeAlignment() 1332 length(seqH) + 1 - gridBeginH, length(seqV) + 1 - gridBeginV); in _computeAlignment() 1336 … = _computeAlignment(localTraceSet, scoutState, suffix(seqH, gridBeginH), suffix(seqV, gridBeginV), in _computeAlignment() 1339 … _adaptLocalTracesToGlobalGrid(localTraceSet, Pair<TPosH, TPosV>(gridBeginH, gridBeginV)); in _computeAlignment()
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